Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3414 Acer truncatum HOM05D003366 ORTHO05D004045 1.2e-68 263.1 133 100.0
Ciclev10015498m.g Citrus clementina HOM05D003366 ORTHO05D004045 2.2e-35 152.5 134 64.2
CiPaw.03G282800 Carya illinoinensis HOM05D003366 ORTHO05D004045 1.0e-32 143.7 117 68.4
Psat1g185040 Pisum sativum HOM05D003366 ORTHO05D004045 4.4e-31 138.3 102 63.7
Gohir.D07G170900 Gossypium hirsutum HOM05D003366 ORTHO05D004045 9.7e-31 137.1 131 59.5
Gorai.001G191000 Gossypium raimondii HOM05D003366 ORTHO05D004045 9.7e-31 137.1 131 59.5
TWI36G0699 Tripterygium wilfordii HOM05D003366 ORTHO05D004045 1.3e-30 136.7 134 57.5
Actinidia35201 Actinidia chinensis HOM05D003366 ORTHO05D004045 3.7e-30 135.2 135 58.5
Medtr5g084030 Medicago truncatula HOM05D003366 ORTHO05D004045 3.7e-30 135.2 101 64.4
CSS0040673 Camellia sinensis var. sinensis HOM05D003366 ORTHO05D004045 4.8e-30 134.8 136 57.4
COL.COLO4_19639 Corchorus olitorius HOM05D003366 ORTHO05D004045 6.3e-30 134.4 131 58.0
MELO3C024189.2 Cucumis melo HOM05D003366 ORTHO05D004045 8.3e-30 134.0 146 56.2
Cpa.g.sc136.37 Carica papaya HOM05D003366 ORTHO05D004045 1.1e-29 133.7 132 57.6
Gorai.007G165300 Gossypium raimondii HOM05D003366 ORTHO05D004045 1.1e-29 133.7 134 56.7
Cfa014212 Carpinus fangiana HOM05D003366 ORTHO05D004045 1.4e-29 133.3 136 58.8
Duzib138G0143 Durio zibethinus HOM05D003366 ORTHO05D004045 1.4e-29 133.3 131 58.8
CsaV3_7G002440 Cucumis sativus L. HOM05D003366 ORTHO05D004045 2.4e-29 132.5 145 55.9
Gohir.A07G163900 Gossypium hirsutum HOM05D003366 ORTHO05D004045 2.4e-29 132.5 131 58.0
TWI18G0380 Tripterygium wilfordii HOM05D003366 ORTHO05D004045 2.4e-29 132.5 134 58.2
QL04p067730 Quercus lobata HOM05D003366 ORTHO05D004045 3.1e-29 132.1 126 64.3
Gohir.D11G155000 Gossypium hirsutum HOM05D003366 ORTHO05D004045 4.1e-29 131.7 134 56.0
Eucgr.A01368 Eucalyptus grandis HOM05D003366 ORTHO05D004045 5.3e-29 131.3 135 56.3
GSVIVG01030116001 Vitis vinifera HOM05D003366 ORTHO05D004045 7.0e-29 131.0 88 71.6
TAR626G1358 Trochodendron aralioides HOM05D003366 ORTHO05D004045 1.6e-28 129.8 116 59.5
Gohir.A11G148200 Gossypium hirsutum HOM05D003366 ORTHO05D004045 2.0e-28 129.4 134 56.0
Lalb_Chr10g0105441 Lupinus albus HOM05D003366 ORTHO05D004045 4.5e-28 128.3 133 54.9
Sed0016337 Sechium edule HOM05D003366 ORTHO05D004045 5.9e-28 127.9 141 54.6
Glyma.02G259000 Glycine max HOM05D003366 ORTHO05D004045 7.7e-28 127.5 134 54.5
Glyma.14G053300 Glycine max HOM05D003366 ORTHO05D004045 7.7e-28 127.5 132 54.5
LjContig00357g0014369 Lotus japonicus HOM05D003366 ORTHO05D004045 7.7e-28 127.5 101 60.4
Ca_06031_v3 Cicer arietinum L. HOM05D003366 ORTHO05D004045 1.7e-27 126.3 132 53.0
Lalb_Chr04g0250271 Lupinus albus HOM05D003366 ORTHO05D004045 1.7e-27 126.3 133 53.4
Oeu045495.1 Olea europaea HOM05D003366 ORTHO05D004045 2.2e-27 125.9 128 58.6
AUR62039696 Chenopodium quinoa HOM05D003366 ORTHO05D004045 5.0e-27 124.8 134 56.0
PGR031G3285 Punica granatum HOM05D003366 ORTHO05D004045 5.0e-27 124.8 134 53.7
Thecc.01G197700 Theobroma cacao HOM05D003366 ORTHO05D004045 8.5e-27 124.0 86 70.9
arahy.Tifrunner.gnm1.ann1.65EY62 Arachis hypogaea HOM05D003366 ORTHO05D004045 1.5e-26 123.2 134 54.5
Oeu023460.1 Olea europaea HOM05D003366 ORTHO05D004045 1.5e-26 123.2 81 75.3
VMungo0647G1799 Vigna mungo HOM05D003366 ORTHO05D004045 1.5e-26 123.2 132 53.8
arahy.Tifrunner.gnm1.ann1.SQZ1L0 Arachis hypogaea HOM05D003366 ORTHO05D004045 1.9e-26 122.9 134 54.5
Manes.12G063602 Manihot esculenta HOM05D003366 ORTHO05D004045 1.9e-26 122.9 132 56.8
arahy.Tifrunner.gnm1.ann1.0B41PU Arachis hypogaea HOM05D003366 ORTHO05D004045 3.2e-26 122.1 93 65.6
MD17G1118200 Malus domestica HOM05D003366 ORTHO05D004045 3.2e-26 122.1 135 52.6
arahy.Tifrunner.gnm1.ann1.8VJ98X Arachis hypogaea HOM05D003366 ORTHO05D004045 5.5e-26 121.3 132 53.8
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 7.2e-26 120.9 77 75.3
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 7.2e-26 120.9 77 75.3
Lj1A799T34 Lonicera japonica HOM05D003366 ORTHO05D004045 1.6e-25 119.8 137 51.8
MD09G1129300 Malus domestica HOM05D003366 ORTHO05D004045 1.6e-25 119.8 131 50.4
FAN02G0729 Fragaria x ananassa HOM05D003366 ORTHO05D004045 2.1e-25 119.4 131 52.7
Psat2g028840 Pisum sativum HOM05D003366 ORTHO05D004045 2.7e-25 119.0 101 58.4
Actinidia18830 Actinidia chinensis HOM05D003366 ORTHO05D004045 3.6e-25 118.6 128 53.9
FvH4_6g40500 Fragaria vesca HOM05D003366 ORTHO05D004045 3.6e-25 118.6 131 52.7
FAN10G3881 Fragaria x ananassa HOM05D003366 ORTHO05D004045 3.6e-25 118.6 131 52.7
FAN14G5851 Fragaria x ananassa HOM05D003366 ORTHO05D004045 3.6e-25 118.6 131 52.7
Hund03398 Selenicereus undatus HOM05D003366 ORTHO05D004045 4.7e-25 118.2 101 56.4
Aqoxy1G04276 Aquilegia oxysepala HOM05D003366 ORTHO05D004045 6.1e-25 117.9 102 57.8
RcHm_v2.0_Chr2g0155751 Rosa chinensis HOM05D003366 ORTHO05D004045 6.1e-25 117.9 131 51.9
Hma1.2p1_0629F.1_g192240 Hydrangea macrophylla HOM05D003366 ORTHO05D004045 1.4e-24 116.7 134 51.5
Cc04_g11110 Coffea canephora HOM05D003366 ORTHO05D004045 1.8e-24 116.3 86 68.6
TWI75G1649 Tripterygium wilfordii HOM05D003366 ORTHO05D004045 1.8e-24 116.3 134 56.7
AUR62009285 Chenopodium quinoa HOM05D003366 ORTHO05D004045 3.0e-24 115.5 104 63.5
HanXRQChr11g0329411 Helianthus annuus HOM05D003366 ORTHO05D004045 8.8e-24 114.0 88 62.5
Hma1.2p1_0599F.1_g187060 Hydrangea macrophylla HOM05D003366 ORTHO05D004045 1.5e-23 113.2 135 48.1
VMungo0647G0370 Vigna mungo HOM05D003366 ORTHO05D004045 1.5e-23 113.2 84 65.5
FAN05G5269 Fragaria x ananassa HOM05D003366 ORTHO05D004045 2.0e-23 112.8 120 52.5
TAR629G0562 Trochodendron aralioides HOM05D003366 ORTHO05D004045 2.6e-23 112.5 107 56.1
MSTRG.9698 Avicennia marina HOM05D003366 ORTHO05D004045 4.4e-23 111.7 120 55.8
Nn1g03151 Nelumbo nucifera HOM05D003366 ORTHO05D004045 5.7e-23 111.3 116 52.6
Nn6g34363 Nelumbo nucifera HOM05D003366 ORTHO05D004045 9.8e-23 110.5 81 64.2
SalBow5G1323 Salvia bowleyana HOM05D003366 ORTHO05D004045 9.8e-23 110.5 134 50.0
SalBow5G5386 Salvia bowleyana HOM05D003366 ORTHO05D004045 9.8e-23 110.5 82 65.9
Potri.014G169100 Populus trichocarpa HOM05D003366 ORTHO05D004045 1.3e-22 110.2 90 65.6
Peaxi162Scf00089g01132 Petunia axillaris HOM05D003366 ORTHO05D004045 2.8e-22 109.0 97 59.8
Dinv26592 Davidia involucrata HOM05D003366 ORTHO05D004045 3.7e-22 108.6 81 65.4
Prupe.3G196200 Prunus persica HOM05D003366 ORTHO05D004045 3.7e-22 108.6 56 83.9
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 4.8e-22 108.2 95 58.9
vmacro09477 Vaccinium macrocarpon HOM05D003366 ORTHO05D004045 6.3e-22 107.8 98 63.3
Migut.D02018 Erythranthe guttata HOM05D003366 ORTHO05D004045 8.3e-22 107.5 141 46.8
THA.LOC104819033 Tarenaya hassleriana HOM05D003366 ORTHO05D004045 1.4e-21 106.7 133 53.4
Thecc.10G171200 Theobroma cacao HOM05D003366 ORTHO05D004045 1.4e-21 106.7 69 66.7
Nitab4.5_0000025g0230 Nicotiana tabacum HOM05D003366 ORTHO05D004045 1.8e-21 106.3 128 49.2
Hund13735 Selenicereus undatus HOM05D003366 ORTHO05D004045 1.8e-21 106.3 136 47.8
Nitab4.5_0003542g0080 Nicotiana tabacum HOM05D003366 ORTHO05D004045 2.4e-21 105.9 100 59.0
Sp2g18590 Schrenkiella parvula HOM05D003366 ORTHO05D004045 2.4e-21 105.9 115 54.8
ATR0751G192 Amborella trichopoda HOM05D003366 ORTHO05D004045 5.4e-21 104.8 88 58.0
Rhsim04G0030100 Rhododendron simsii HOM05D003366 ORTHO05D004045 5.4e-21 104.8 119 56.3
CANSAT64G2473 Cannabis sativa HOM05D003366 ORTHO05D004045 7.0e-21 104.4 56 80.4
Nitab4.5_0000510g0170 Nicotiana tabacum HOM05D003366 ORTHO05D004045 7.0e-21 104.4 97 52.6
Lj8A136T94 Lonicera japonica HOM05D003366 ORTHO05D004045 9.1e-21 104.0 135 48.1
Migut.O00185 Erythranthe guttata HOM05D003366 ORTHO05D004045 1.2e-20 103.6 82 62.2
AL8G20910 Arabidopsis lyrata HOM05D003366 ORTHO05D004045 1.6e-20 103.2 87 58.6
AL8G20960 Arabidopsis lyrata HOM05D003366 ORTHO05D004045 1.6e-20 103.2 87 58.6
MBI14_g24035_MAGBIO Magnolia biondii HOM05D003366 ORTHO05D004045 1.6e-20 103.2 109 51.4
PGSC0003DMG400015153 Solanum tuberosum HOM05D003366 ORTHO05D004045 2.0e-20 102.8 97 53.6
unitig_21.g20442 Utricularia gibba HOM05D003366 ORTHO05D004045 2.0e-20 102.8 77 66.2
RcHm_v2.0_Chr5g0011911 Rosa chinensis HOM05D003366 ORTHO05D004045 2.7e-20 102.4 131 48.1
Solyc03g111850.3 Solanum lycopersicum HOM05D003366 ORTHO05D004045 2.7e-20 102.4 97 53.6
Lsat_1_v5_gn_7_97420 Lactuca sativa HOM05D003366 ORTHO05D004045 5.9e-20 101.3 139 46.0
Sopen03g030970 Solanum pennellii HOM05D003366 ORTHO05D004045 5.9e-20 101.3 96 53.1
Nitab4.5_0000774g0060 Nicotiana tabacum HOM05D003366 ORTHO05D004045 7.7e-20 100.9 128 48.4
Sabra14G0128900 Salix brachista HOM05D003366 ORTHO05D004045 1.0e-19 100.5 86 64.0
PSO675G3120 Papaver somniferum HOM05D003366 ORTHO05D004045 1.7e-19 99.8 108 53.7
SGA_v2.0_scaffold25G10778 Striga asiatica HOM05D003366 ORTHO05D004045 1.7e-19 99.8 122 50.0
Thhalv10004384m.g Eutrema salsugineum HOM05D003366 ORTHO05D004045 2.9e-19 99.0 104 53.8
AT5G48220 Arabidopsis thaliana HOM05D003366 ORTHO05D004045 3.8e-19 98.6 55 80.0
Thecc.01G198100 Theobroma cacao HOM05D003366 ORTHO05D004045 5.0e-19 98.2 87 57.5
DCAR_019671 Daucus carota HOM05D003366 ORTHO05D004045 8.6e-19 97.4 81 59.3
Aqoxy3G01284 Aquilegia oxysepala HOM05D003366 ORTHO05D004045 1.1e-18 97.1 108 49.1
Aa31LG5G13060 Aethionema arabicum HOM05D003366 ORTHO05D004045 1.9e-18 96.3 52 80.8
Carub.0008s0779 Capsella rubella HOM05D003366 ORTHO05D004045 2.5e-18 95.9 106 50.9
PSO541G3149 Papaver somniferum HOM05D003366 ORTHO05D004045 2.5e-18 95.9 115 49.6
ECA234G0856 Erigeron canadensis HOM05D003366 ORTHO05D004045 3.3e-18 95.5 98 54.1
Ah.16g105750 Amaranthus hybridus HOM05D003366 ORTHO05D004045 4.2e-18 95.1 96 54.2
EL10Ac2g04021 Beta vulgaris HOM05D003366 ORTHO05D004045 4.2e-18 95.1 133 47.4
AUR62014541 Chenopodium quinoa HOM05D003366 ORTHO05D004045 4.2e-18 95.1 99 49.5
BcaC06g30818 Brassica carinata HOM05D003366 ORTHO05D004045 5.5e-18 94.7 73 63.0
CARHR184070 Cardamine hirsuta HOM05D003366 ORTHO05D004045 7.2e-18 94.4 102 49.0
AUR62008962 Chenopodium quinoa HOM05D003366 ORTHO05D004045 7.2e-18 94.4 120 45.0
EL10Ac2g04609 Beta vulgaris HOM05D003366 ORTHO05D004045 9.5e-18 94.0 108 50.0
BolC7t44416H Brassica oleracea HOM05D003366 ORTHO05D004045 1.2e-17 93.6 140 45.0
ClCG02G002960 Citrullus lanatus HOM05D003366 ORTHO05D004045 1.2e-17 93.6 124 50.0
Lsat_1_v5_gn_5_122300 Lactuca sativa HOM05D003366 ORTHO05D004045 1.6e-17 93.2 81 56.8
HanXRQChr10g0306821 Helianthus annuus HOM05D003366 ORTHO05D004045 2.1e-17 92.8 101 54.5
C07p38950 Brassica napus HOM05D003366 ORTHO05D004045 4.7e-17 91.7 141 44.0
SGA_v2.0_scaffold7G04167 Striga asiatica HOM05D000527 ORTHO05D000559 1.4e-16 90.1 109 45.0
A06p39320 Brassica napus HOM05D003366 ORTHO05D004045 1.8e-16 89.7 89 53.9
BraA06t26847Z Brassica rapa HOM05D003366 ORTHO05D004045 1.8e-16 89.7 89 53.9
Phvul.008G218200 Phaseolus vulgaris HOM05D003366 ORTHO05D004045 1.8e-16 89.7 47 83.0
Aa31sc202G30 Aethionema arabicum HOM05D003366 ORTHO05D004045 4.4e-15 85.1 105 44.8
Carub.0003s2605 Capsella rubella HOM05D003366 ORTHO05D004045 5.7e-15 84.7 137 42.3
THA.LOC104808841 Tarenaya hassleriana HOM05D003366 ORTHO05D004045 5.7e-15 84.7 139 41.0
AagrBONN_evm.TU.Sc2ySwM_344.1836 Anthoceros agrestis HOM05D003366 ORTHO05D004045 1.7e-14 83.2 53 64.2
Peaxi162Scf00801g00730 Petunia axillaris HOM05D003366 ORTHO05D004045 1.7e-14 83.2 81 51.9
AL3G42040 Arabidopsis lyrata HOM05D003366 ORTHO05D004045 1.1e-13 80.5 136 41.9
CDE02G1598 Ceratophyllum demersum HOM05D003366 ORTHO05D004045 1.1e-13 80.5 86 47.7
Ah.16g101920 Amaranthus hybridus HOM05D003366 ORTHO05D004045 1.4e-13 80.1 70 52.9
Thhalv10002557m.g Eutrema salsugineum HOM05D003366 ORTHO05D004045 1.4e-13 80.1 136 39.7
SMO143G0312 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.4e-13 80.1 59 59.3
AT2G04400 Arabidopsis thaliana HOM05D003366 ORTHO05D004045 2.4e-13 79.3 136 41.2
HPP92_022822 Vanilla planifolia HOM05D003366 ORTHO05D004045 2.4e-13 79.3 97 44.3
Sp3g23210 Schrenkiella parvula HOM05D003366 ORTHO05D004045 3.2e-13 79.0 105 43.8
BcaB08g34466 Brassica carinata HOM05D003366 ORTHO05D004045 4.1e-13 78.6 103 43.7
BcaC01g03208 Brassica carinata HOM05D003366 ORTHO05D004045 7.0e-13 77.8 105 43.8
CDE02G1466 Ceratophyllum demersum HOM05D003366 ORTHO05D004045 7.0e-13 77.8 88 42.0
CARHR102260 Cardamine hirsuta HOM05D003366 ORTHO05D004045 9.2e-13 77.4 84 47.6
C03p54710 Brassica napus HOM05D003366 ORTHO05D004045 1.6e-12 76.6 105 42.9
BolC3t17760H Brassica oleracea HOM05D003366 ORTHO05D004045 1.6e-12 76.6 105 43.8
SHI10170 Sapria himalayana HOM05D003366 ORTHO05D004045 3.5e-12 75.5 61 55.7
BolC6t35385H Brassica oleracea HOM05D003366 ORTHO05D004045 4.5e-12 75.1 105 41.9
A03p44300 Brassica napus HOM05D003366 ORTHO05D004045 5.9e-12 74.7 105 42.9
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 2.9e-11 72.4 105 42.9
Pp3c10_25830 Physcomitrium patens HOM05D003366 ORTHO05D004045 6.6e-11 71.2 39 82.1
BraA03t13559Z Brassica rapa HOM05D003366 ORTHO05D004045 1.1e-10 70.5 105 40.0
PSO210G3015 Papaver somniferum HOM05D003366 ORTHO05D004045 1.1e-10 70.5 38 78.9
PSO210G6970 Papaver somniferum HOM05D003366 ORTHO05D004045 1.1e-10 70.5 38 78.9
SEGI_10339 Sequoiadendron giganteum HOM05D003366 ORTHO05D004045 4.3e-10 68.6 44 65.9
Zm00001eb424560 Zea mays HOM05D003366 ORTHO05D004045 1.6e-09 66.6 144 37.5
BcaC08g43008 Brassica carinata HOM05D003366 ORTHO05D004045 1.0e-08 63.9 105 39.0
C06p02570 Brassica napus HOM05D003366 ORTHO05D004045 1.0e-08 63.9 105 39.0
Mapoly0007s0091 Marchantia polymorpha HOM05D003366 ORTHO05D004045 8.9e-08 60.8 38 68.4
C07p10270 Brassica napus HOM05D003366 ORTHO05D027103 1.5e-07 60.1 84 42.9
BcaC01g03322 Brassica carinata HOM05D003366 ORTHO05D031881 4.9e-06 55.1 75 42.7


User provided reference genes

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