Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3380 Acer truncatum HOM05D002238 ORTHO05D001984 7.2e-116 420.6 216 100.0
Ciclev10016158m.g Citrus clementina HOM05D002238 ORTHO05D001984 1.4e-71 273.5 208 72.1
Oeu027351.4 Olea europaea HOM05D002238 ORTHO05D001984 3.3e-68 262.3 177 75.7
VMungo0647G0871 Vigna mungo HOM05D000829 ORTHO05D001984 4.3e-68 261.9 209 68.9
Eucgr.G02573 Eucalyptus grandis HOM05D002238 ORTHO05D001984 1.6e-67 260.0 208 69.2
Phvul.004G077200 Phaseolus vulgaris HOM05D002238 ORTHO05D001984 2.8e-67 259.2 208 68.8
QL02p019830 Quercus lobata HOM05D002238 ORTHO05D001984 6.2e-67 258.1 224 64.7
Ca_12576_v3 Cicer arietinum L. HOM05D002238 ORTHO05D001984 1.0e-66 257.3 208 68.3
Lj5g0021748 Lotus japonicus HOM05D002238 ORTHO05D001984 1.0e-66 257.3 215 66.5
arahy.Tifrunner.gnm1.ann1.DIZ14G Arachis hypogaea HOM05D002238 ORTHO05D001984 1.4e-66 256.9 208 67.8
Gohir.D04G004500 Gossypium hirsutum HOM05D002238 ORTHO05D001984 2.3e-66 256.1 208 68.3
Sabra14G0126500 Salix brachista HOM05D002238 ORTHO05D001984 3.1e-66 255.8 208 69.2
Glyma.16G151700 Glycine max HOM05D002238 ORTHO05D001984 4.0e-66 255.4 208 68.3
Phvul.008G288600 Phaseolus vulgaris HOM05D002238 ORTHO05D001984 4.0e-66 255.4 208 67.8
Prupe.6G340200 Prunus persica HOM05D002238 ORTHO05D001984 4.0e-66 255.4 208 67.8
Gorai.012G005700 Gossypium raimondii HOM05D002238 ORTHO05D001984 5.2e-66 255.0 209 67.9
Lalb_Chr10g0095971 Lupinus albus HOM05D002238 ORTHO05D001984 6.8e-66 254.6 208 65.9
Potri.014G166200 Populus trichocarpa HOM05D002238 ORTHO05D001984 6.8e-66 254.6 208 68.3
Prupe.3G198900 Prunus persica HOM05D002238 ORTHO05D001984 6.8e-66 254.6 208 67.8
TWI36G1349 Tripterygium wilfordii HOM05D002238 ORTHO05D001984 6.8e-66 254.6 208 67.3
Lj2g0027163 Lotus japonicus HOM05D002238 ORTHO05D001984 8.9e-66 254.2 208 67.3
Thecc.10G082400 Theobroma cacao HOM05D002238 ORTHO05D001984 8.9e-66 254.2 208 67.3
PGR044G1809 Punica granatum HOM05D002238 ORTHO05D001984 2.0e-65 253.1 208 66.8
TPR.G24144 Trifolium pratense HOM05D002238 ORTHO05D001984 2.0e-65 253.1 208 65.4
MSTRG.27160 Avicennia marina HOM05D002238 ORTHO05D001984 2.6e-65 252.7 222 61.7
Cpa.g.sc211.23 Carica papaya HOM05D002238 ORTHO05D001984 2.6e-65 252.7 208 65.9
Gohir.A05G411500 Gossypium hirsutum HOM05D002238 ORTHO05D001984 2.6e-65 252.7 208 67.8
vmacro12095 Vaccinium macrocarpon HOM05D002238 ORTHO05D001984 3.4e-65 252.3 209 66.5
Duzib114G0194 Durio zibethinus HOM05D002238 ORTHO05D001984 4.4e-65 251.9 208 67.3
Aqoxy2G01045 Aquilegia oxysepala HOM05D002238 ORTHO05D001984 5.8e-65 251.5 208 67.3
CSS0035678 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D001984 5.8e-65 251.5 208 66.8
Glyma.02G070100 Glycine max HOM05D002238 ORTHO05D001984 5.8e-65 251.5 208 67.3
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 5.8e-65 251.5 209 65.1
Lj1A794T53 Lonicera japonica HOM05D002238 ORTHO05D001984 7.5e-65 251.1 208 65.9
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 9.8e-65 250.8 208 65.9
TAR629G0143 Trochodendron aralioides HOM05D002238 ORTHO05D001984 9.8e-65 250.8 208 67.3
Aqoxy4G02593 Aquilegia oxysepala HOM05D002238 ORTHO05D001984 1.3e-64 250.4 208 66.8
COL.COLO4_17143 Corchorus olitorius HOM05D002238 ORTHO05D001984 1.3e-64 250.4 208 67.3
Rhsim06G0175300 Rhododendron simsii HOM05D002238 ORTHO05D001984 1.3e-64 250.4 208 66.3
CSS0015125 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D001984 2.2e-64 249.6 208 66.3
Ca_22317_v3 Cicer arietinum L. HOM05D002238 ORTHO05D001984 2.9e-64 249.2 208 64.4
SGA_v2.0_scaffold96G29097 Striga asiatica HOM05D002238 ORTHO05D001984 2.9e-64 249.2 208 65.9
Manes.03G101000 Manihot esculenta HOM05D002238 ORTHO05D001984 3.7e-64 248.8 208 66.3
THA.LOC104819037 Tarenaya hassleriana HOM05D002238 ORTHO05D001984 3.7e-64 248.8 205 65.9
Aa31LG5G18320 Aethionema arabicum HOM05D002238 ORTHO05D001984 4.9e-64 248.4 208 65.4
CANSAT21G0573 Cannabis sativa HOM05D002238 ORTHO05D001984 4.9e-64 248.4 209 66.5
CiPaw.01G209500 Carya illinoinensis HOM05D002238 ORTHO05D001984 4.9e-64 248.4 208 67.8
MD17G1115700 Malus domestica HOM05D002238 ORTHO05D001984 4.9e-64 248.4 208 66.3
RcHm_v2.0_Chr2g0156191 Rosa chinensis HOM05D002238 ORTHO05D001984 6.4e-64 248.1 208 65.9
GSVIVG01035933001 Vitis vinifera HOM05D002238 ORTHO05D001984 6.4e-64 248.1 208 65.9
CANSAT21G2220 Cannabis sativa HOM05D002238 ORTHO05D001984 8.3e-64 247.7 209 66.0
Hma1.2p1_0017F.1_g011480 Hydrangea macrophylla HOM05D002238 ORTHO05D001984 8.3e-64 247.7 208 66.3
Oeu009627.1 Olea europaea HOM05D002238 ORTHO05D001984 1.4e-63 246.9 207 64.3
Rhsim01G0200000 Rhododendron simsii HOM05D002238 ORTHO05D001984 1.4e-63 246.9 217 64.5
Cc02_g30130 Coffea canephora HOM05D002238 ORTHO05D001984 1.9e-63 246.5 212 64.2
Migut.N01823 Erythranthe guttata HOM05D002238 ORTHO05D001984 2.4e-63 246.1 208 64.4
Medtr8g077430 Medicago truncatula HOM05D002238 ORTHO05D001984 2.4e-63 246.1 208 63.9
AL3G19110 Arabidopsis lyrata HOM05D002238 ORTHO05D001984 3.2e-63 245.7 208 63.9
AT3G07750 Arabidopsis thaliana HOM05D002238 ORTHO05D001984 9.2e-63 244.2 207 64.3
Carub.0003s0733 Capsella rubella HOM05D002238 ORTHO05D001984 9.2e-63 244.2 208 63.5
Thhalv10021262m.g Eutrema salsugineum HOM05D002238 ORTHO05D001984 9.2e-63 244.2 208 63.9
RcHm_v2.0_Chr4g0385201 Rosa chinensis HOM05D002238 ORTHO05D001984 9.2e-63 244.2 208 65.4
Rhsim01G0212800 Rhododendron simsii HOM05D002238 ORTHO05D001984 1.6e-62 243.4 217 64.1
MBI16_g14386_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D001984 3.5e-62 242.3 209 66.0
SalBow4G2450 Salvia bowleyana HOM05D002238 ORTHO05D001984 3.5e-62 242.3 211 62.6
Sc04g0009070 Simmondsia chinensis HOM05D002238 ORTHO05D001984 3.5e-62 242.3 209 64.6
CARHR082460 Cardamine hirsuta HOM05D002238 ORTHO05D001984 6.0e-62 241.5 208 63.0
CAN.G1394.37 Capsicum annuum HOM05D002238 ORTHO05D001984 7.8e-62 241.1 208 64.9
MBI16_g20582_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D001984 7.8e-62 241.1 209 65.6
Sed0013246 Sechium edule HOM05D002238 ORTHO05D001984 7.8e-62 241.1 208 64.9
Sp3g06680 Schrenkiella parvula HOM05D002238 ORTHO05D001984 1.0e-61 240.7 208 63.0
FAN02G1526 Fragaria x ananassa HOM05D002238 ORTHO05D001984 1.3e-61 240.4 208 63.5
AUR62004701 Chenopodium quinoa HOM05D002238 ORTHO05D001984 1.7e-61 240.0 226 60.2
BraA01t04366Z Brassica rapa HOM05D002238 ORTHO05D001984 2.3e-61 239.6 214 61.7
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 2.3e-61 239.6 208 62.0
FAN05G0939 Fragaria x ananassa HOM05D002238 ORTHO05D001984 2.3e-61 239.6 208 63.0
Zm00001eb228830 Zea mays HOM05D002238 ORTHO05D001984 2.3e-61 239.6 208 62.0
HanXRQChr17g0537591 Helianthus annuus HOM05D002238 ORTHO05D001984 3.9e-61 238.8 212 60.8
PGSC0003DMG400012510 Solanum tuberosum HOM05D002238 ORTHO05D001984 3.9e-61 238.8 208 63.9
FvH4_6g40740 Fragaria vesca HOM05D002238 ORTHO05D001984 5.0e-61 238.4 208 62.5
FAN14G0117 Fragaria x ananassa HOM05D002238 ORTHO05D001984 5.0e-61 238.4 208 62.5
Solyc08g007520.4 Solanum lycopersicum HOM05D002238 ORTHO05D001984 5.0e-61 238.4 208 63.9
Sopen08g003480 Solanum pennellii HOM05D002238 ORTHO05D001984 5.0e-61 238.4 208 63.9
FAN09G1531 Fragaria x ananassa HOM05D002238 ORTHO05D001984 6.6e-61 238.0 208 62.5
Nitab4.5_0001265g0080 Nicotiana tabacum HOM05D002238 ORTHO05D001984 8.6e-61 237.7 187 70.6
CsaV3_1G001380 Cucumis sativus L. HOM05D002238 ORTHO05D001984 1.5e-60 236.9 208 63.0
Zm00001eb228810 Zea mays HOM05D002238 ORTHO05D001984 1.5e-60 236.9 208 61.1
BcaB04g21272 Brassica carinata HOM05D002238 ORTHO05D001984 1.9e-60 236.5 214 60.7
BolC1t05536H Brassica oleracea HOM05D002238 ORTHO05D001984 1.9e-60 236.5 214 60.7
Nitab4.5_0001816g0140 Nicotiana tabacum HOM05D002238 ORTHO05D001984 2.5e-60 236.1 208 63.9
Os12g0403800 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D001984 2.5e-60 236.1 208 62.5
MELO3C008154.2 Cucumis melo HOM05D002238 ORTHO05D001984 3.3e-60 235.7 208 62.0
PSO675G0487 Papaver somniferum HOM05D002238 ORTHO05D001984 3.3e-60 235.7 208 63.5
ECA238G4099 Erigeron canadensis HOM05D002238 ORTHO05D001984 1.2e-59 233.8 208 62.5
Hund01750 Selenicereus undatus HOM05D002238 ORTHO05D001984 1.6e-59 233.4 210 62.9
SGA_v2.0_scaffold63G21756 Striga asiatica HOM05D002238 ORTHO05D001984 1.6e-59 233.4 210 62.4
PSO541G0351 Papaver somniferum HOM05D002238 ORTHO05D001984 2.8e-59 232.6 208 63.0
AUR62023617 Chenopodium quinoa HOM05D002238 ORTHO05D001984 3.6e-59 232.3 210 62.9
BcaC05g29568 Brassica carinata HOM05D002238 ORTHO05D001984 1.8e-58 229.9 214 59.3
SHI10149 Sapria himalayana HOM05D002238 ORTHO05D001984 8.9e-58 227.6 208 62.0
Lsat_1_v5_gn_7_95300 Lactuca sativa HOM05D002238 ORTHO05D001984 2.6e-57 226.1 208 61.5
BraA05t22780Z Brassica rapa HOM05D002238 ORTHO05D001984 3.4e-57 225.7 208 59.1
A05p40470 Brassica napus HOM05D002238 ORTHO05D001984 7.5e-57 224.6 208 58.7
C05p59570 Brassica napus HOM05D002238 ORTHO05D001984 7.5e-57 224.6 208 58.7
Nn3g19738 Nelumbo nucifera HOM05D002238 ORTHO05D001984 2.2e-56 223.0 208 61.1
Peaxi162Scf00065g01518 Petunia axillaris HOM05D002238 ORTHO05D001984 2.2e-56 223.0 237 56.1
CDE05G0385 Ceratophyllum demersum HOM05D002238 ORTHO05D001984 2.9e-56 222.6 208 59.1
ATR0624G131 Amborella trichopoda HOM05D002238 ORTHO05D001984 2.4e-55 219.5 207 58.0
Eucgr.G01770 Eucalyptus grandis HOM05D002238 ORTHO05D001984 3.2e-55 219.2 195 61.5
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 2.7e-54 216.1 224 56.2
Ah.08g209290 Amaranthus hybridus HOM05D002238 ORTHO05D001984 6.0e-54 214.9 210 59.5
arahy.Tifrunner.gnm1.ann1.VW2QG0 Arachis hypogaea HOM05D002238 ORTHO05D001984 6.0e-54 214.9 182 65.4
SGA_v2.0_scaffold7G04028 Striga asiatica HOM05D002238 ORTHO05D001984 1.1e-50 204.1 165 70.9
SGA_v2.0_scaffold347G49567 Striga asiatica HOM05D002238 ORTHO05D001984 1.4e-50 203.8 200 59.0
SalBow1G0040 Salvia bowleyana HOM05D002238 ORTHO05D001984 2.0e-49 199.9 189 58.7
SalBow1G1877 Salvia bowleyana HOM05D002238 ORTHO05D001984 5.8e-49 198.4 187 58.8
AUR62029701 Chenopodium quinoa HOM05D002238 ORTHO05D001984 2.9e-48 196.1 188 59.0
CDE05G1607 Ceratophyllum demersum HOM05D002238 ORTHO05D001984 9.2e-47 191.0 200 57.0
ECA236G2666 Erigeron canadensis HOM05D002238 ORTHO05D001984 4.6e-46 188.7 205 51.7
Dinv21284 Davidia involucrata HOM05D002238 ORTHO05D001984 4.3e-44 182.2 108 84.3
unitig_52.g17116 Utricularia gibba HOM05D002238 ORTHO05D001984 7.3e-44 181.4 168 57.7
vmacro03834 Vaccinium macrocarpon HOM05D002238 ORTHO05D001984 6.2e-43 178.3 181 58.0
Mapoly0032s0043 Marchantia polymorpha HOM05D002238 ORTHO05D001984 1.8e-42 176.8 207 47.3
Sed0014080 Sechium edule HOM05D002238 ORTHO05D001984 2.4e-42 176.4 109 80.7
Hma1.2p1_0108F.1_g051790 Hydrangea macrophylla HOM05D002238 ORTHO05D001984 4.0e-42 175.6 109 81.7
Pp3c22_2380 Physcomitrium patens HOM05D002238 ORTHO05D001984 8.9e-42 174.5 208 46.6
MBI07_g04746_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D001984 2.0e-41 173.3 110 81.8
MD09G1125700 Malus domestica HOM05D002238 ORTHO05D001984 2.0e-41 173.3 132 68.2
AUR62006368 Chenopodium quinoa HOM05D002238 ORTHO05D001984 7.6e-41 171.4 144 64.6
QL02p101242 Quercus lobata HOM05D002238 ORTHO05D001984 2.2e-40 169.9 168 60.7
HanXRQChr04g0126541 Helianthus annuus HOM05D002238 ORTHO05D001984 1.1e-39 167.5 121 70.2
MBI07_g09667_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D001984 1.1e-39 167.5 209 51.7
EL10Ac1g00031 Beta vulgaris HOM05D002238 ORTHO05D001984 9.3e-39 164.5 111 75.7
Dinv26619 Davidia involucrata HOM05D002238 ORTHO05D001984 1.0e-37 161.0 171 53.2
SMO141G0199 Selaginella moellendorffii HOM05D002238 ORTHO05D001984 2.3e-37 159.8 210 43.3
QL02p101482 Quercus lobata HOM05D002238 ORTHO05D001984 3.9e-37 159.1 110 74.5
QL02p101256 Quercus lobata HOM05D002238 ORTHO05D001984 1.1e-28 131.0 143 54.5
SEGI_02051 Sequoiadendron giganteum HOM05D002238 ORTHO05D001984 1.9e-28 130.2 91 76.9
SGA_v2.0_scaffold63G21761 Striga asiatica HOM05D002238 ORTHO05D001984 4.5e-25 119.0 70 82.9
MCO02G242 Micromonas commoda HOM05D002238 ORTHO05D001984 2.2e-24 116.7 232 34.1
SGA_v2.0_scaffold391G50648 Striga asiatica HOM05D002238 ORTHO05D001984 3.9e-21 105.9 82 70.7
MBI16_g03601_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D001984 1.1e-20 104.4 118 52.5
EL10Ac1g00032 Beta vulgaris HOM05D002238 ORTHO05D001984 1.6e-19 100.5 61 80.3
Actinidia27652 Actinidia chinensis HOM05D002238 ORTHO05D001984 1.9e-15 87.0 79 58.2
SEGI_38138 Sequoiadendron giganteum HOM05D002238 ORTHO05D001984 2.5e-15 86.7 80 58.8
Glyma.14G004366 Glycine max HOM05D002238 ORTHO05D001984 3.2e-15 86.3 59 74.6
MBI16_g34946_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D001984 3.5e-14 82.8 132 40.9
QL02p101303 Quercus lobata HOM05D002238 ORTHO05D001984 3.5e-14 82.8 62 64.5
SEGI_32706 Sequoiadendron giganteum HOM05D002238 ORTHO05D001984 6.0e-14 82.0 61 63.9
Lsat_1_v5_gn_7_113780 Lactuca sativa HOM05D002402 ORTHO05D002633 3.0e-13 79.7 61 65.6
HPP92_016911 Vanilla planifolia HOM05D002238 ORTHO05D001984 1.1e-12 77.8 101 46.5
Zm00001eb228850 Zea mays HOM05D002238 ORTHO05D001984 1.1e-12 77.8 50 70.0
Cre03.g188200 Chlamydomonas reinhardtii HOM05D002238 ORTHO05D001984 1.5e-12 77.4 95 42.1
CBR_g31491 Chara braunii HOM05D002238 ORTHO05D001984 1.3e-11 74.3 125 38.4
Lj1A789T53 Lonicera japonica HOM05D002238 ORTHO05D001984 1.6e-11 73.9 53 66.0
HanXRQChr15g0466681 Helianthus annuus HOM05D002238 ORTHO05D001984 2.1e-11 73.6 107 43.0
Lju9295C0T0 Lonicera japonica HOM05D004058 ORTHO05D001984 3.2e-07 59.7 124 33.1
Sed0012804 Sechium edule HOM05D004387 ORTHO05D005218 1.6e-06 57.4 209 25.8
MELO3C023136.2 Cucumis melo HOM05D004387 ORTHO05D005218 2.1e-06 57.0 177 26.6
Lsat_1_v5_gn_5_41360 Lactuca sativa HOM05D000207 ORTHO05D016190 3.6e-06 56.2 57 59.6
CsaV3_4G011700 Cucumis sativus L. HOM05D004387 ORTHO05D005218 4.6e-06 55.8 209 24.9
DCAR_014859 Daucus carota HOM05D004058 ORTHO05D001984 4.6e-06 55.8 156 27.6
CDE08G0930 Ceratophyllum demersum HOM05D004058 ORTHO05D001984 7.9e-06 55.1 164 30.5


User provided reference genes

Program Settings