Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 2.4e-273 944.9 467 100.0
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 3.1e-249 864.8 434 98.6
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 7.2e-206 720.7 444 79.1
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 2.9e-199 698.7 467 74.1
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 8.6e-199 697.2 466 73.4
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 3.4e-195 685.3 467 72.2
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 4.4e-195 684.9 460 73.9
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 4.1e-193 678.3 465 72.3
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 6.6e-191 671.0 463 72.1
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 5.6e-190 667.9 466 71.9
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 3.1e-188 662.1 444 73.9
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 3.4e-187 658.7 467 70.9
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 3.9e-183 645.2 452 71.7
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 8.6e-183 644.0 467 68.7
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 1.9e-182 642.9 452 71.2
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 3.6e-181 638.6 460 70.4
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 1.4e-180 636.7 458 70.3
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 1.5e-179 633.3 442 71.7
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.0e-179 632.9 465 68.8
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 1.3e-178 630.2 442 71.3
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 1.7e-178 629.8 445 69.9
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 4.9e-178 628.2 459 68.8
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 5.4e-177 624.8 431 71.7
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 2.1e-176 622.9 430 70.9
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 4.6e-176 621.7 433 69.1
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 3.0e-175 619.0 473 66.8
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 6.6e-175 617.8 441 67.8
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 1.9e-174 616.3 455 68.4
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 2.1e-173 612.8 461 68.5
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 2.1e-173 612.8 440 68.4
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 2.8e-173 612.5 449 65.9
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 2.8e-173 612.5 433 68.8
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 1.4e-172 610.1 453 65.1
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 1.8e-172 609.8 449 65.5
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 3.8e-170 602.1 461 66.2
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 1.4e-169 600.1 429 69.5
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 9.3e-169 597.4 444 66.4
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 1.2e-168 597.0 429 68.1
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 3.5e-168 595.5 432 67.1
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 1.9e-166 589.7 465 64.5
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 3.3e-166 589.0 465 63.2
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 1.6e-165 586.6 450 65.1
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 2.1e-165 586.3 463 64.4
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 3.6e-165 585.5 429 67.1
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 8.1e-165 584.3 455 63.7
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 2.6e-163 579.3 450 64.7
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 3.4e-163 578.9 450 64.0
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 3.4e-163 578.9 444 64.0
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 5.8e-163 578.2 447 65.8
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 9.9e-163 577.4 445 65.8
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 1.7e-162 576.6 451 64.5
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 1.7e-162 576.6 456 63.8
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.7e-162 576.6 461 62.9
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 2.2e-162 576.2 450 64.9
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 3.8e-162 575.5 448 64.5
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 6.4e-162 574.7 451 65.2
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 1.1e-161 573.9 439 67.0
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 1.9e-161 573.2 448 65.2
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 1.9e-161 573.2 463 63.9
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 9.3e-161 570.9 438 64.6
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 4.6e-160 568.5 449 65.0
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 4.6e-160 568.5 461 62.9
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 1.0e-159 567.4 461 63.3
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 3.9e-159 565.5 449 65.0
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 1.1e-158 563.9 440 64.5
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 1.9e-158 563.1 430 64.4
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 4.3e-158 562.0 471 61.6
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 1.6e-157 560.1 461 63.8
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 3.6e-157 558.9 449 64.4
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 3.6e-157 558.9 448 63.4
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 8.1e-157 557.8 399 70.2
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 4.0e-156 555.4 462 61.5
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 3.4e-155 552.4 488 59.8
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 4.9e-154 548.5 436 63.8
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 4.3e-150 535.4 418 65.8
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 2.9e-146 522.7 495 56.6
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 5.5e-145 518.5 361 71.5
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 6.0e-144 515.0 438 59.1
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 2.0e-139 500.0 472 57.2
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 2.5e-137 493.0 454 55.3
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.3e-133 480.7 448 60.0
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 4.8e-133 478.8 435 55.9
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 3.1e-132 476.1 433 55.2
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 1.3e-130 470.7 432 53.7
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 1.6e-128 463.8 746 39.4
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 1.8e-127 460.3 336 67.6
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 6.7e-127 458.4 301 72.8
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 2.0e-126 456.8 318 69.8
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 1.4e-121 440.7 390 61.0
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 5.7e-118 428.7 331 65.0
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 7.7e-115 418.3 443 48.3
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 2.1e-112 410.2 331 61.6
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 5.3e-108 395.6 318 62.6
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 7.0e-108 395.2 316 63.6
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 4.5e-107 392.5 317 63.4
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 5.0e-106 389.0 312 62.2
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 5.5e-105 385.6 447 48.8
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 1.4e-103 380.9 393 47.6
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 3.0e-103 379.8 364 51.6
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 1.8e-95 354.0 389 47.0
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 2.8e-93 346.7 400 50.0
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 3.3e-89 333.2 239 69.0
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 1.1e-84 318.2 241 66.4
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 2.0e-83 313.9 352 50.3
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 4.7e-80 302.8 217 68.7
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 4.0e-79 299.7 212 72.2
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 2.3e-74 283.9 439 41.7
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 1.9e-68 264.2 213 63.8
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 1.1e-65 255.0 174 67.2
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 1.2e-59 235.0 211 59.7
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 2.7e-51 207.2 148 73.0
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 1.4e-47 194.9 231 44.6
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 3.8e-45 186.8 136 66.9
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 1.9e-44 184.5 144 67.4
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 3.2e-44 183.7 160 58.1
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 3.0e-42 177.2 137 67.2
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 7.9e-35 152.5 132 61.4
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 3.2e-28 130.6 94 68.1
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 1.5e-22 111.7 104 49.0
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 4.5e-22 110.2 394 24.4
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 3.8e-21 107.1 396 25.3
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 8.4e-21 105.9 75 69.3
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 1.4e-20 105.1 399 26.3
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 4.8e-16 90.1 149 40.9
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 9.4e-12 75.9 60 65.0
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 1.6e-11 75.1 383 22.5
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 2.4e-07 61.2 35 88.6


User provided reference genes

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