Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 0.0e+00 1163.3 587 100.0
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 5.8e-277 957.2 590 82.9
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 4.3e-272 941.0 588 81.3
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 5.6e-272 940.6 585 80.2
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 4.0e-270 934.5 590 80.0
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 3.8e-268 927.9 591 80.0
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 1.2e-266 922.9 589 79.5
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 2.3e-265 918.7 591 78.7
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 9.6e-264 913.3 591 77.7
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 2.1e-263 912.1 583 79.4
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 6.2e-263 910.6 583 79.2
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 2.4e-262 908.7 590 78.1
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 1.2e-261 906.4 582 78.2
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 1.5e-261 906.0 560 79.8
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 7.6e-261 903.7 591 77.0
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 2.2e-260 902.1 588 76.5
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 1.1e-259 899.8 579 78.1
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 1.2e-258 896.3 670 70.3
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 7.8e-258 893.6 620 73.7
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 1.5e-256 889.4 581 78.1
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 3.3e-256 888.3 538 81.2
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 2.8e-255 885.2 566 76.7
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 4.8e-255 884.4 612 74.3
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 1.5e-253 879.4 558 78.7
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 2.6e-253 878.6 590 74.9
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 5.8e-253 877.5 572 75.2
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 9.9e-253 876.7 589 75.7
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 1.3e-252 876.3 590 74.9
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 2.9e-252 875.2 590 75.1
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 3.8e-252 874.8 590 74.4
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 9.3e-251 870.2 564 76.6
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 9.3e-251 870.2 588 73.6
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 2.1e-250 869.0 591 73.6
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 6.0e-250 867.5 595 73.4
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 7.9e-250 867.1 569 76.1
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 1.6e-247 859.4 596 72.8
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 1.1e-246 856.7 579 73.4
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 2.4e-246 855.5 604 72.2
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 4.0e-246 854.7 585 72.5
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 5.3e-246 854.4 547 77.0
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 1.5e-245 852.8 585 71.8
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 1.1e-243 846.7 585 72.3
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 3.2e-243 845.1 544 76.5
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 7.1e-243 844.0 586 72.2
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 2.7e-242 842.0 580 72.9
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 4.6e-242 841.3 544 76.3
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 6.0e-242 840.9 590 71.5
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 1.5e-240 836.3 582 72.2
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 1.9e-240 835.9 544 75.6
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 1.9e-240 835.9 582 72.0
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 2.5e-240 835.5 565 73.5
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 2.5e-240 835.5 590 71.7
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 5.7e-240 834.3 590 72.5
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 7.4e-240 833.9 590 71.2
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 1.4e-238 829.7 587 70.5
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 1.5e-237 826.2 602 70.8
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 4.5e-237 824.7 590 70.5
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 4.5e-237 824.7 590 70.8
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 2.7e-234 815.5 590 70.3
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 2.7e-234 815.5 590 70.3
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 3.5e-234 815.1 590 70.2
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 6.1e-234 814.3 590 70.2
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 1.0e-233 813.5 590 70.5
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 1.0e-233 813.5 551 74.4
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 3.0e-233 812.0 654 65.4
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 9.7e-232 807.0 590 69.7
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 9.0e-230 800.4 540 73.3
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 1.3e-228 796.6 503 77.9
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 1.7e-228 796.2 585 69.2
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 1.9e-227 792.7 604 67.7
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 8.2e-223 777.3 558 71.5
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 1.8e-222 776.2 479 81.4
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 5.3e-222 774.6 585 67.0
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 2.0e-221 772.7 509 77.6
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 8.5e-220 767.3 554 68.6
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 8.5e-220 767.3 485 78.1
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 4.2e-219 765.0 588 65.8
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 1.2e-218 763.5 546 66.7
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 1.3e-215 753.4 544 67.5
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 3.7e-215 751.9 582 66.8
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 5.0e-212 741.5 590 64.7
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 7.2e-211 737.6 528 71.0
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 2.1e-210 736.1 486 74.9
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 4.7e-210 734.9 583 66.6
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 2.4e-206 722.6 588 67.2
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 2.9e-196 689.1 539 66.6
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 8.0e-194 681.0 472 68.6
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 2.0e-189 666.4 446 76.0
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 6.2e-178 628.2 575 53.4
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 1.4e-174 617.1 578 58.7
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 7.0e-174 614.8 548 54.2
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 3.3e-163 579.3 529 54.4
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 1.6e-162 577.0 385 74.8
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 2.9e-159 566.2 565 58.1
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 6.0e-157 558.5 335 82.1
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 6.9e-145 518.5 386 67.6
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 3.4e-144 516.2 319 79.0
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 1.6e-141 507.3 559 52.1
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 2.6e-136 490.0 345 67.5
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 1.3e-135 487.6 309 75.4
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 2.1e-130 470.3 299 77.9
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 3.7e-130 469.5 437 56.5
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 1.0e-127 461.5 425 58.6
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 9.0e-121 438.3 572 41.3
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 9.7e-107 391.7 365 53.4
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 4.2e-94 349.7 206 84.0
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.8e-92 344.4 235 72.3
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 7.5e-91 339.0 246 68.7
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 8.2e-90 335.5 380 45.8
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 2.6e-51 207.6 160 63.8
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 2.4e-49 201.1 140 68.6
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 4.7e-45 186.8 149 57.0
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.1e-44 185.7 158 59.5
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 2.3e-44 184.5 127 72.4
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.6e-37 161.8 160 57.5
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 1.5e-35 155.2 99 73.7
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 1.0e-31 142.5 85 76.5
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 3.5e-24 117.5 69 78.3
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 4.3e-22 110.5 64 75.0
Gohir.A07G186850 Gossypium hirsutum HOM05D002380 ORTHO05D026288 9.6e-22 109.4 76 73.7
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 1.3e-18 99.0 96 43.8
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 6.7e-15 86.7 96 38.5
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 2.8e-13 81.3 105 47.6
Actinidia09729 Actinidia chinensis HOM05D002380 ORTHO05D026288 2.4e-12 78.2 77 61.0
Lj1P772T14 Lonicera japonica HOM05D002380 ORTHO05D008286 5.3e-12 77.0 76 57.9
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.5e-11 75.5 42 81.0
Lalb_Chr04g0249911 Lupinus albus HOM05D002380 ORTHO05D026288 1.0e-10 72.8 46 76.1
CAN.G96.10 Capsicum annuum HOM05D002380 ORTHO05D026288 3.0e-07 61.2 45 62.2
Lj5g0008066 Lotus japonicus HOM05D002380 ORTHO05D008286 1.5e-06 58.9 35 71.4


User provided reference genes

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