Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 0.0e+00 1245.0 716 100.0
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 1.0e-187 661.0 723 59.9
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 7.8e-151 538.5 738 52.7
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 2.6e-146 523.5 762 51.2
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 9.6e-141 505.0 744 50.9
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 1.2e-138 498.0 754 49.9
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 9.3e-136 488.4 697 51.1
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 9.6e-133 478.4 746 50.5
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 3.8e-129 466.5 739 47.2
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 2.4e-128 463.8 747 47.9
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 4.2e-128 463.0 748 48.7
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 1.8e-126 457.6 723 49.8
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 2.5e-125 453.8 471 55.0
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 8.1e-124 448.7 808 44.8
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 1.4e-123 448.0 836 45.0
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 2.6e-122 443.7 785 42.2
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 2.9e-121 440.3 720 48.5
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 6.5e-121 439.1 721 48.4
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 1.4e-120 438.0 507 52.5
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 1.4e-120 438.0 798 46.1
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 1.3e-118 431.4 511 52.4
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.5e-117 427.9 784 45.9
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 7.4e-117 425.6 722 47.8
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 9.0e-115 418.7 748 45.9
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 3.4e-114 416.8 773 47.6
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 2.2e-113 414.1 755 40.8
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 3.3e-109 400.2 770 47.5
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 5.7e-109 399.4 739 45.1
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 4.1e-107 393.3 650 49.4
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 9.0e-107 392.1 746 48.3
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 2.0e-106 391.0 781 44.6
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 2.0e-106 391.0 781 44.6
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 4.5e-106 389.8 749 48.1
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 4.2e-104 383.3 768 43.5
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.6e-103 381.3 748 47.7
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.0e-102 378.6 740 47.3
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.8e-102 377.9 753 47.4
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 6.7e-102 375.9 447 50.6
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 9.7e-101 372.1 470 49.1
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 6.3e-100 369.4 538 45.9
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 4.1e-99 366.7 478 48.5
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.2e-95 355.1 662 42.1
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 2.1e-95 354.4 393 53.2
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 5.2e-94 349.7 392 52.6
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 6.7e-94 349.4 674 41.2
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 5.7e-93 346.3 462 47.8
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 2.8e-92 344.0 420 50.2
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 6.3e-92 342.8 421 49.9
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 1.1e-91 342.0 451 48.1
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 4.5e-90 336.7 504 45.2
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 7.7e-90 335.9 779 44.0
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.0e-89 335.5 746 39.0
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 2.2e-89 334.3 382 52.9
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 2.1e-87 327.8 670 40.6
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 4.7e-87 326.6 418 51.2
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 4.4e-85 320.1 452 49.8
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 1.7e-84 318.2 363 51.8
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 8.2e-84 315.8 670 40.7
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 7.0e-83 312.8 733 38.3
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 7.7e-82 309.3 737 42.2
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 1.0e-81 308.9 760 41.6
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 1.0e-81 308.9 463 46.7
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 1.7e-81 308.1 650 42.3
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 6.5e-81 306.2 548 42.2
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 8.5e-81 305.8 443 47.9
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 8.5e-81 305.8 443 47.9
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 1.9e-80 304.7 752 39.6
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 4.2e-80 303.5 465 46.2
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 7.2e-80 302.8 864 35.3
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 1.6e-79 301.6 377 50.9
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 4.7e-79 300.1 490 45.1
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 8.0e-79 299.3 481 45.7
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 1.0e-78 298.9 735 39.3
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 6.8e-78 296.2 444 46.4
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 8.8e-78 295.8 391 47.8
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 2.0e-77 294.7 545 41.3
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 7.5e-77 292.7 436 45.0
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 7.5e-77 292.7 362 50.0
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 2.4e-75 287.7 446 48.2
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 4.1e-75 287.0 388 47.9
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 5.4e-75 286.6 671 41.4
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 5.9e-74 283.1 377 48.8
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 2.2e-73 281.2 405 47.2
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 1.1e-72 278.9 474 47.7
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 1.5e-72 278.5 681 42.3
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 1.9e-72 278.1 434 47.2
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 2.5e-72 277.7 441 46.9
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 3.2e-72 277.3 453 44.4
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 5.5e-72 276.6 438 46.1
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 2.1e-71 274.6 434 46.8
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 1.0e-70 272.3 501 40.9
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 4.0e-70 270.4 469 42.0
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 6.8e-70 269.6 560 39.5
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 1.2e-69 268.9 433 45.5
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 1.1e-67 262.3 390 45.1
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 1.4e-67 261.9 621 40.6
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 1.4e-67 261.9 648 34.1
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 2.4e-67 261.2 525 42.5
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 4.1e-67 260.4 490 40.0
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 7.0e-67 259.6 677 39.3
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 1.2e-66 258.8 443 47.4
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 1.2e-66 258.8 374 46.3
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 4.5e-66 256.9 436 48.2
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 4.5e-66 256.9 506 39.7
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 4.5e-66 256.9 257 57.2
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 7.8e-66 256.1 646 40.9
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 2.3e-65 254.6 675 38.5
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 6.6e-65 253.1 413 43.3
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 6.6e-65 253.1 916 34.3
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 2.8e-63 247.7 366 48.4
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 2.8e-63 247.7 435 41.4
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 1.4e-62 245.4 639 39.3
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 1.4e-62 245.4 436 43.3
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 1.4e-62 245.4 639 39.3
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 3.2e-59 234.2 454 38.3
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 1.5e-56 225.3 366 44.3
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 5.6e-56 223.4 379 42.5
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 1.2e-55 222.2 402 39.3
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 2.1e-55 221.5 465 38.5
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 2.3e-54 218.0 459 38.1
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 5.2e-54 216.9 382 42.9
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 3.4e-53 214.2 459 37.9
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 3.4e-53 214.2 221 53.4
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 5.8e-53 213.4 471 43.5
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 9.2e-51 206.1 249 50.6
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 3.5e-50 204.1 194 56.2
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 6.0e-50 203.4 316 44.9
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 6.0e-50 203.4 207 57.0
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.3e-49 202.2 147 65.3
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 3.0e-49 201.1 315 41.6
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 2.0e-45 188.3 525 34.9
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 2.3e-41 174.9 175 53.1
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 1.5e-40 172.2 215 47.0
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 3.1e-38 164.5 244 43.4
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 4.4e-37 160.6 137 55.5
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.2e-34 152.5 133 58.6
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 2.1e-34 151.8 150 51.3
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 1.0e-33 149.4 184 46.7
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 2.3e-33 148.3 233 43.8
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 2.5e-32 144.8 136 52.9
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 4.7e-31 140.6 230 40.9
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 8.4e-28 129.8 370 40.5
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 2.3e-25 121.7 149 51.0
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 3.2e-19 101.3 96 58.3
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 2.3e-17 95.1 70 62.9
Hma1.2p1_1100F.1_g257070 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 3.3e-16 91.3 115 44.3
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 3.1e-14 84.7 71 56.3
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 1.7e-12 79.0 170 31.2
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 7.1e-11 73.6 120 34.2
Carub.0006s3370 Capsella rubella HOM05D020923 ORTHO05D021440 1.5e-08 65.9 111 38.7
SEGI_25704 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.1e-06 59.7 99 42.4
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 1.4e-06 59.3 97 36.1
Dinv01388 Davidia involucrata HOM05D033017 ORTHO05D005266 9.0e-06 56.6 171 32.2


User provided reference genes

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