Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1128.2 575 100.0
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.5e-149 533.9 622 51.1
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 6.1e-130 468.8 642 46.7
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 6.8e-129 465.3 642 46.4
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 1.2e-128 464.5 635 45.4
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 1.4e-126 457.6 644 45.7
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 3.1e-126 456.4 635 44.4
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 9.1e-126 454.9 643 45.6
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 1.6e-125 454.1 644 46.0
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 2.0e-125 453.8 644 45.3
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 4.5e-125 452.6 644 45.5
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 5.9e-125 452.2 645 45.1
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 1.0e-124 451.4 635 44.7
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 1.3e-124 451.1 638 44.8
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 1.3e-124 451.1 645 45.0
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 2.2e-124 450.3 644 45.0
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 2.2e-124 450.3 600 47.3
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 6.5e-124 448.7 639 45.7
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 1.1e-123 448.0 635 44.7
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 1.9e-123 447.2 643 45.1
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 1.9e-123 447.2 638 44.2
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 1.9e-123 447.2 634 44.6
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 1.9e-123 447.2 634 45.0
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 5.5e-123 445.7 638 44.4
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 7.2e-123 445.3 644 44.9
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 1.2e-122 444.5 638 44.2
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 1.2e-122 444.5 604 46.5
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 2.1e-122 443.7 648 44.6
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 2.7e-122 443.4 635 45.5
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.7e-122 443.4 625 45.8
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 2.7e-122 443.4 639 44.9
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 3.6e-122 443.0 646 44.7
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 3.6e-122 443.0 639 44.6
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 8.0e-122 441.8 633 44.9
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 8.0e-122 441.8 637 45.5
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 1.0e-121 441.4 641 44.3
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 1.8e-121 440.7 633 44.7
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 1.8e-121 440.7 637 45.2
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 1.8e-121 440.7 601 45.8
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 2.3e-121 440.3 639 44.9
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 2.3e-121 440.3 637 45.2
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 3.0e-121 439.9 647 43.3
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 4.0e-121 439.5 637 43.8
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 5.2e-121 439.1 642 44.4
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 5.2e-121 439.1 637 45.4
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 8.8e-121 438.3 638 45.0
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 2.6e-120 436.8 638 42.3
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 3.4e-120 436.4 644 44.1
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 4.4e-120 436.0 636 44.5
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 4.4e-120 436.0 636 44.5
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 4.4e-120 436.0 641 44.0
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 9.8e-120 434.9 646 44.1
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 1.3e-119 434.5 646 44.6
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 2.8e-119 433.3 629 44.8
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 2.8e-119 433.3 642 44.5
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 4.9e-119 432.6 643 44.8
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 8.3e-119 431.8 645 43.9
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 1.4e-118 431.0 645 43.9
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 1.4e-118 431.0 645 43.6
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 1.8e-118 430.6 644 43.8
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 2.4e-118 430.3 649 44.1
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 2.4e-118 430.3 641 43.2
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.4e-118 430.3 645 43.7
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 3.1e-118 429.9 653 43.8
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 3.1e-118 429.9 653 43.8
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 3.1e-118 429.9 613 45.2
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 9.2e-118 428.3 640 43.6
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 1.6e-117 427.6 655 43.5
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 2.7e-117 426.8 648 43.1
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 5.9e-117 425.6 649 43.5
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 1.3e-116 424.5 643 43.7
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 2.3e-116 423.7 643 43.5
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 2.3e-116 423.7 681 42.6
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 3.8e-116 422.9 643 43.4
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 5.0e-116 422.5 649 42.4
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 5.0e-116 422.5 642 43.1
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 1.1e-115 421.4 643 43.2
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 1.5e-115 421.0 639 42.9
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 1.5e-115 421.0 638 42.9
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 5.6e-115 419.1 595 44.4
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 7.3e-115 418.7 642 42.8
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 7.3e-115 418.7 637 44.0
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 7.3e-115 418.7 639 43.3
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 9.5e-115 418.3 677 40.5
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.2e-114 417.9 633 43.8
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 1.2e-114 417.9 639 43.0
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 2.1e-114 417.2 609 45.2
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 3.6e-114 416.4 645 43.6
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 4.7e-114 416.0 640 43.1
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 8.0e-114 415.2 640 43.0
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.0e-113 414.8 644 42.9
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 1.0e-113 414.8 644 42.9
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 1.0e-113 414.8 656 43.6
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 1.4e-113 414.5 645 43.3
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 1.8e-113 414.1 646 42.3
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 1.8e-113 414.1 632 43.8
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 3.0e-113 413.3 639 42.7
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 4.0e-113 412.9 643 43.1
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 5.2e-113 412.5 643 43.7
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 5.2e-113 412.5 650 42.2
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 8.9e-113 411.8 644 42.1
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 8.9e-113 411.8 638 43.4
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 1.5e-112 411.0 642 42.8
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 1.5e-112 411.0 657 42.3
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 3.4e-112 409.8 644 42.5
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 5.7e-112 409.1 642 42.7
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 5.7e-112 409.1 636 43.4
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 5.7e-112 409.1 644 43.3
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 7.5e-112 408.7 638 43.4
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 7.5e-112 408.7 599 43.4
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.9e-111 406.8 631 42.9
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 3.7e-111 406.4 631 41.4
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 3.7e-111 406.4 571 45.2
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 4.9e-111 406.0 644 42.1
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 7.0e-110 402.1 637 42.9
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 7.0e-110 402.1 644 42.4
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 9.2e-110 401.7 638 43.1
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 1.2e-109 401.4 581 46.1
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 1.6e-109 401.0 626 43.1
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 2.0e-109 400.6 625 42.6
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 2.0e-109 400.6 626 43.0
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 2.7e-109 400.2 637 42.7
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 5.9e-109 399.1 637 41.9
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 3.0e-108 396.7 643 42.0
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 3.9e-108 396.4 621 42.0
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 5.0e-108 396.0 655 41.5
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 3.3e-107 393.3 585 45.8
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 7.3e-107 392.1 639 40.8
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 8.0e-106 388.7 596 41.6
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.2e-104 384.8 620 41.6
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 2.0e-101 374.0 608 39.1
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 3.5e-101 373.2 637 40.0
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 6.0e-101 372.5 605 40.0
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 8.6e-100 368.6 630 39.5
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 2.8e-98 363.6 619 40.4
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 2.3e-97 360.5 591 38.6
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 1.2e-93 348.2 550 41.1
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 1.7e-87 327.8 624 39.7
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 2.7e-85 320.5 574 40.4
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 1.0e-84 318.5 628 36.3
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 4.7e-82 309.7 467 40.9
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 8.9e-81 305.4 613 35.4
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.6e-80 303.9 566 36.9
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.8e-79 300.1 601 35.8
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.1e-77 294.3 607 35.4
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 3.3e-75 287.0 667 37.2
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 2.8e-74 283.9 340 48.2
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 8.1e-74 282.3 544 37.9
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 7.6e-72 275.8 265 56.6
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.5e-64 250.0 503 35.0
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.9e-54 218.0 589 31.7
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 1.2e-45 188.7 265 43.4
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 6.9e-41 172.9 442 34.6
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 3.3e-35 154.1 200 47.5
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 5.9e-32 143.3 201 46.3
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 2.7e-29 134.4 599 25.4
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 6.3e-26 123.2 195 40.5
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 7.0e-25 119.8 199 42.2
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 2.9e-23 114.4 211 33.6
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 2.1e-21 108.2 154 42.2
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.5e-19 102.1 155 40.0
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 5.7e-19 100.1 512 25.0
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 5.7e-11 73.6 165 34.5
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 2.8e-10 71.2 63 61.9


User provided reference genes

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