Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 6.0e-166 587.4 292 100.0
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.7e-128 463.0 229 100.0
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 2.2e-115 419.5 291 74.9
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 6.1e-102 374.8 290 67.6
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 8.0e-102 374.4 291 68.0
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.5e-100 370.2 292 66.4
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 7.5e-100 367.9 287 69.7
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 3.7e-99 365.5 294 66.7
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.7e-96 356.7 290 65.5
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.5e-96 354.8 290 65.5
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.2e-95 352.1 290 64.8
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 7.2e-95 351.3 289 65.4
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.4e-95 350.9 290 64.8
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.4e-95 350.9 287 64.8
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.2e-94 350.5 281 65.8
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 6.1e-94 348.2 292 63.7
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.0e-94 347.8 275 65.8
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.0e-94 347.8 275 65.8
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.0e-93 347.4 287 64.5
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 3.0e-93 345.9 275 65.5
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.8e-93 344.7 275 65.1
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.6e-92 342.8 287 62.7
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.4e-92 342.0 275 65.1
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 9.8e-92 340.9 292 63.0
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 9.8e-92 340.9 283 65.7
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.7e-91 340.1 287 63.4
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 1.7e-91 340.1 287 64.8
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 4.8e-91 338.6 292 63.4
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 7.0e-90 334.7 275 64.0
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.0e-89 333.2 290 61.4
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 1.3e-88 330.5 292 63.0
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 1.9e-87 326.6 287 63.1
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 4.2e-87 325.5 288 62.5
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 4.2e-87 325.5 288 62.5
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 4.0e-85 318.9 290 59.3
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 1.2e-84 317.4 278 63.3
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 1.2e-84 317.4 289 60.2
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.5e-84 317.0 292 59.2
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.7e-84 315.1 290 59.3
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.7e-84 315.1 290 59.7
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.9e-83 312.0 290 59.3
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.3e-83 311.6 287 60.6
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.4e-82 310.5 289 60.2
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 2.0e-81 306.6 287 60.3
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.7e-81 306.2 289 58.8
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 5.9e-81 305.1 287 58.9
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.3e-80 303.1 282 58.2
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 5.0e-80 302.0 284 58.8
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.8e-77 293.5 288 59.4
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 1.2e-76 290.8 287 56.4
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 1.2e-76 290.8 287 56.4
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 3.4e-76 289.3 287 56.8
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 2.2e-75 286.6 284 56.3
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 2.2e-75 286.6 271 56.5
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 3.7e-75 285.8 291 55.7
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 6.4e-75 285.0 288 55.2
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.1e-74 284.3 292 56.2
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 3.2e-74 282.7 290 54.5
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 5.4e-74 282.0 289 56.4
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.6e-73 280.4 291 54.6
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.0e-73 280.0 287 55.1
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.5e-73 279.3 289 56.4
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.6e-73 278.9 285 56.8
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 5.9e-73 278.5 277 57.4
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 1.0e-72 277.7 291 54.0
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.3e-72 277.3 293 54.6
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.3e-72 277.3 267 57.7
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 3.9e-72 275.8 287 54.0
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.0e-72 275.4 286 55.6
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 1.1e-71 274.2 287 53.7
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 4.3e-71 272.3 286 54.2
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 5.6e-71 271.9 267 56.6
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 7.3e-71 271.6 292 54.5
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.2e-70 270.8 279 54.1
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.6e-70 270.4 286 53.8
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.8e-70 269.6 286 53.1
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 3.6e-70 269.2 289 55.7
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.4e-69 267.3 292 54.8
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 1.8e-69 266.9 291 51.9
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 4.0e-69 265.8 286 52.4
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 5.2e-69 265.4 285 53.7
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 6.8e-69 265.0 293 50.5
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 2.6e-68 263.1 287 52.3
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 3.4e-68 262.7 285 51.9
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 3.4e-68 262.7 291 52.9
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 4.4e-68 262.3 294 51.7
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.3e-67 260.8 296 50.3
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.7e-67 260.4 286 52.4
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 4.9e-67 258.8 277 54.9
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.9e-66 256.9 283 51.6
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 9.2e-66 254.6 287 50.9
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 2.0e-65 253.4 283 50.9
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 7.8e-65 251.5 287 52.3
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 5.0e-64 248.8 283 53.0
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 9.5e-63 244.6 259 51.7
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 3.6e-62 242.7 283 50.2
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 8.1e-62 241.5 285 48.1
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 1.4e-61 240.7 285 49.5
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 1.4e-61 240.7 266 52.3
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 1.4e-61 240.7 275 50.5
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.8e-61 240.4 266 52.3
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 6.8e-61 238.4 294 50.0
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 6.8e-61 238.4 287 47.7
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 8.9e-61 238.0 263 53.2
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 8.9e-61 238.0 284 48.2
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.2e-60 237.7 236 56.4
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 2.0e-60 236.9 275 51.3
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 3.4e-60 236.1 281 50.5
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 3.4e-60 236.1 281 50.5
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 5.8e-60 235.3 281 51.6
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.9e-59 233.0 170 71.2
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 6.4e-59 231.9 258 50.0
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 3.2e-58 229.6 252 51.2
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.3e-56 224.2 275 49.5
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 2.3e-56 223.4 285 46.0
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 3.9e-56 222.6 250 51.2
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 6.6e-56 221.9 275 48.4
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 6.6e-56 221.9 275 48.4
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 6.6e-56 221.9 250 51.2
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 8.6e-56 221.5 355 40.6
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.5e-55 220.7 253 49.4
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.9e-55 220.3 250 51.2
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.9e-55 220.3 250 51.2
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.9e-55 220.3 251 49.4
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.5e-55 219.9 292 49.3
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 4.3e-55 219.2 281 49.5
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.4e-53 214.2 282 48.6
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 1.5e-52 210.7 275 47.3
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.6e-52 209.9 268 49.6
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 2.6e-52 209.9 275 46.9
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 4.4e-52 209.1 225 52.4
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 1.7e-51 207.2 275 46.5
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 2.9e-51 206.5 256 46.5
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 1.3e-48 197.6 283 42.4
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.9e-47 193.7 261 46.7
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.9e-47 193.7 224 51.3
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 3.3e-47 193.0 278 42.4
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 5.8e-44 182.2 248 41.9
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.9e-43 179.9 291 41.9
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 2.9e-43 179.9 283 40.3
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 6.4e-43 178.7 256 44.5
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 1.2e-41 174.5 279 42.7
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 1.0e-40 171.4 198 51.0
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 3.9e-40 169.5 217 52.1
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 3.3e-39 166.4 184 48.9
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 4.3e-39 166.0 270 41.1
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 9.6e-39 164.9 99 77.8
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.1e-37 161.4 292 39.4
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 9.0e-37 158.3 102 70.6
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 4.5e-36 156.0 199 47.2
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.1e-34 151.4 264 43.9
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 3.5e-33 146.4 268 40.3
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 6.9e-29 132.1 101 60.4
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 3.9e-24 116.3 199 39.2
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.3e-22 111.3 78 65.4
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.4e-21 107.8 246 36.6
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 4.0e-21 106.3 286 31.5
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.3e-21 105.9 252 35.7
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 9.0e-21 105.1 246 35.8
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 6.0e-17 92.4 226 33.2
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 1.0e-08 65.1 191 33.5
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 1.5e-07 61.2 80 40.0


User provided reference genes

Program Settings