Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 6.0e-97 357.5 175 100.0
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 1.8e-88 329.3 175 89.1
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 3.9e-88 328.2 175 88.0
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 1.1e-87 326.6 175 88.0
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 1.5e-87 326.2 175 87.4
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 1.9e-87 325.9 175 88.0
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 2.5e-87 325.5 173 88.4
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 5.7e-87 324.3 175 88.0
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 5.7e-87 324.3 175 87.4
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 9.7e-87 323.6 170 88.8
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 2.2e-86 322.4 175 86.9
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 2.8e-86 322.0 174 87.9
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.8e-86 322.0 174 87.9
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.8e-86 322.0 174 87.9
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 3.7e-86 321.6 174 85.6
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 4.8e-86 321.2 174 86.2
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 8.2e-86 320.5 175 87.4
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 1.1e-85 320.1 175 85.1
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 1.4e-85 319.7 175 85.7
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 1.8e-85 319.3 167 89.2
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.8e-85 319.3 174 86.8
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 1.8e-85 319.3 174 85.6
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 2.4e-85 318.9 167 88.6
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 2.4e-85 318.9 175 85.7
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 2.4e-85 318.9 174 85.6
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 2.4e-85 318.9 174 85.6
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 4.1e-85 318.2 168 88.7
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 5.3e-85 317.8 174 86.2
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 6.9e-85 317.4 174 85.6
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 9.0e-85 317.0 174 85.1
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 9.0e-85 317.0 173 86.1
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 9.0e-85 317.0 166 89.8
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 9.0e-85 317.0 166 89.8
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 9.0e-85 317.0 175 86.3
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.2e-84 316.6 174 85.6
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 1.2e-84 316.6 175 85.1
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 1.5e-84 316.2 168 86.9
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.5e-84 316.2 173 86.7
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 2.0e-84 315.8 175 84.0
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 2.6e-84 315.5 168 86.9
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 3.4e-84 315.1 168 86.9
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 3.4e-84 315.1 166 88.6
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 3.4e-84 315.1 167 88.0
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 3.4e-84 315.1 174 84.5
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 4.5e-84 314.7 174 85.1
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 4.5e-84 314.7 168 86.9
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 5.9e-84 314.3 175 84.6
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 7.7e-84 313.9 166 88.6
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 7.7e-84 313.9 168 86.9
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 7.7e-84 313.9 174 85.1
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 7.7e-84 313.9 173 85.0
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 1.0e-83 313.5 168 86.9
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 1.3e-83 313.2 176 84.1
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 1.3e-83 313.2 166 88.0
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 1.3e-83 313.2 172 84.9
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 1.3e-83 313.2 175 84.6
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 1.7e-83 312.8 167 86.2
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 1.7e-83 312.8 167 86.2
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 1.7e-83 312.8 168 86.3
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 1.7e-83 312.8 167 86.2
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 1.7e-83 312.8 168 86.3
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 2.2e-83 312.4 174 85.6
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 2.2e-83 312.4 166 88.0
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 2.9e-83 312.0 166 87.3
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 2.9e-83 312.0 174 83.3
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 2.9e-83 312.0 174 83.3
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 2.9e-83 312.0 174 83.9
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.8e-83 311.6 174 82.2
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 5.0e-83 311.2 167 86.2
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 6.5e-83 310.8 166 87.3
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 6.5e-83 310.8 167 85.6
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 6.5e-83 310.8 167 85.6
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 6.5e-83 310.8 172 85.5
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 6.5e-83 310.8 173 85.5
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 6.5e-83 310.8 178 84.3
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 1.1e-82 310.1 167 85.6
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 1.1e-82 310.1 167 85.6
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.1e-82 310.1 174 82.8
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 1.1e-82 310.1 170 83.5
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 1.4e-82 309.7 165 87.3
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 1.4e-82 309.7 172 83.1
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 1.9e-82 309.3 174 81.6
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.2e-82 308.5 174 81.6
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 4.2e-82 308.1 167 85.0
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 5.5e-82 307.8 166 87.3
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 1.2e-81 306.6 174 80.5
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 2.7e-81 305.4 166 86.1
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 3.6e-81 305.1 166 85.5
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 1.0e-80 303.5 172 81.4
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 1.4e-80 303.1 169 85.8
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 1.8e-80 302.8 165 86.7
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 2.3e-80 302.4 174 81.6
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 6.7e-80 300.8 165 85.5
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 6.7e-80 300.8 174 81.0
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 8.8e-80 300.4 165 84.2
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 4.3e-79 298.1 170 82.9
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 1.3e-78 296.6 167 80.8
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 2.2e-78 295.8 171 81.3
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 3.7e-78 295.0 166 83.1
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 4.8e-78 294.7 175 76.6
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 6.3e-78 294.3 166 82.5
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 2.4e-77 292.4 166 81.9
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 9.1e-77 290.4 174 77.0
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 1.3e-75 286.6 168 81.5
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 4.2e-74 281.6 166 80.1
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.1e-73 279.3 167 75.4
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 7.9e-73 277.3 164 76.2
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 3.9e-72 275.0 173 75.1
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 5.1e-72 274.6 165 77.6
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 1.5e-71 273.1 163 75.5
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 5.7e-71 271.2 165 76.4
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 7.4e-71 270.8 166 72.3
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 1.4e-69 266.5 173 69.4
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 5.3e-69 264.6 163 73.6
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 3.5e-68 261.9 167 76.0
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 3.5e-68 261.9 174 75.3
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 3.2e-66 255.4 164 72.6
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 3.2e-66 255.4 165 72.7
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 1.4e-64 250.0 162 73.5
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 2.3e-64 249.2 167 70.7
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 3.9e-64 248.4 163 69.3
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 5.2e-64 248.1 161 70.8
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 8.8e-64 247.3 161 73.3
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 2.2e-62 242.7 164 67.7
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 2.8e-62 242.3 164 69.5
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 2.4e-61 239.2 161 69.6
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 5.3e-61 238.0 161 69.6
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 5.3e-61 238.0 142 73.9
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 7.0e-61 237.7 161 70.2
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 1.9e-58 229.6 168 66.7
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 4.2e-58 228.4 168 65.5
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 1.2e-57 226.9 148 75.0
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 4.7e-57 224.9 124 86.3
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 1.0e-56 223.8 174 66.7
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 2.3e-56 222.6 171 66.1
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 2.3e-56 222.6 160 65.6
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 5.7e-55 218.0 115 88.7
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 7.5e-55 217.6 113 89.4
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 2.8e-54 215.7 165 59.4
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 1.1e-53 213.8 113 89.4
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 1.8e-53 213.0 170 60.6
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 1.8e-53 213.0 112 88.4
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 3.1e-53 212.2 113 86.7
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 1.2e-52 210.3 116 83.6
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 1.0e-51 207.2 120 79.2
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 2.2e-51 206.1 109 87.2
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 9.4e-50 200.7 162 55.6
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.7e-49 198.4 163 56.4
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.7e-49 198.4 163 56.4
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.7e-49 198.4 163 56.4
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.7e-49 198.4 163 56.4
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.7e-49 198.4 163 56.4
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 1.4e-48 196.8 175 60.0
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 7.5e-47 191.0 166 53.6
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 4.5e-44 181.8 116 71.6
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 3.3e-42 175.6 113 72.6
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 4.9e-38 161.8 89 83.1
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 8.3e-38 161.0 175 53.1
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 5.4e-37 158.3 89 80.9
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 1.5e-31 140.2 84 78.6
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 1.3e-30 137.1 76 80.3
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 8.9e-24 114.4 64 79.7
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 7.5e-23 111.3 71 73.2
CARHR006190 Cardamine hirsuta HOM05D003673 ORTHO05D004764 2.9e-22 109.4 56 87.5
TPR.G10161 Trifolium pratense HOM05D003673 ORTHO05D004764 2.9e-22 109.4 55 89.1
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 7.1e-21 104.8 71 71.8
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 2.1e-20 103.2 54 88.9
Lj8C8T3 Lonicera japonica HOM05D003673 ORTHO05D004764 3.7e-14 82.4 43 86.0
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 1.2e-12 77.4 47 78.7
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 2.1e-12 76.6 59 62.7
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 5.6e-10 68.6 35 88.6
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 4.0e-08 62.4 33 81.8


User provided reference genes

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