Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.2e-158 563.1 280 100.0
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 9.5e-137 490.3 272 90.4
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 5.4e-132 474.6 272 87.5
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.1e-131 472.6 273 87.2
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 2.1e-131 472.6 273 87.2
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 3.5e-131 471.9 273 86.4
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 7.8e-131 470.7 273 86.8
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 1.1e-129 466.8 273 85.7
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.3e-129 465.3 274 85.0
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 4.3e-129 464.9 274 85.0
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 7.3e-129 464.2 274 85.0
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 7.3e-129 464.2 274 85.0
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 9.6e-129 463.8 273 83.5
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.6e-128 463.0 274 83.9
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 6.2e-128 461.1 280 82.5
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.1e-127 458.8 272 83.5
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 6.9e-127 457.6 274 83.6
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 1.2e-126 456.8 274 83.2
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.5e-126 456.4 274 82.8
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.0e-126 456.1 275 83.6
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 2.6e-126 455.7 274 84.3
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 4.4e-126 454.9 272 83.1
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 5.8e-126 454.5 273 82.4
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 9.9e-126 453.8 278 83.1
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.1e-124 450.3 271 83.0
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 4.2e-124 448.4 274 82.5
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 7.1e-124 447.6 273 81.7
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 9.3e-124 447.2 275 82.9
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.2e-123 446.8 275 80.7
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.2e-123 446.8 273 81.3
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 2.7e-123 445.7 280 80.7
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 6.0e-123 444.5 286 77.3
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 5.1e-122 441.4 275 81.5
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 5.1e-122 441.4 278 78.4
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.1e-121 440.3 278 78.8
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.5e-121 439.9 279 78.1
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 3.3e-121 438.7 275 80.7
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 4.3e-121 438.3 278 77.7
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 9.6e-121 437.2 272 80.9
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 6.2e-120 434.5 286 76.6
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 6.2e-120 434.5 279 77.4
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 8.1e-120 434.1 279 79.9
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.4e-119 433.3 272 80.9
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 5.3e-119 431.4 282 79.1
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 6.9e-119 431.0 276 79.3
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.5e-118 429.9 286 78.3
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.5e-118 429.9 276 77.2
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 2.0e-118 429.5 275 80.4
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 2.6e-118 429.1 306 72.9
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 3.4e-118 428.7 253 85.0
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 9.9e-118 427.2 274 79.6
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.3e-117 426.8 276 78.6
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 3.8e-117 425.2 276 78.3
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.4e-116 423.3 273 78.0
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.9e-116 422.9 268 78.7
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 2.4e-116 422.5 272 79.4
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 9.3e-116 420.6 274 76.6
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.6e-115 419.9 281 75.8
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.1e-115 419.5 251 83.7
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 3.5e-115 418.7 285 75.8
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 6.0e-115 417.9 281 75.4
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 6.0e-115 417.9 275 76.7
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 6.0e-115 417.9 280 76.4
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 6.7e-114 414.5 274 76.6
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 6.7e-114 414.5 305 71.1
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.1e-113 413.7 278 77.3
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 4.3e-113 411.8 278 76.3
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 7.4e-113 411.0 278 74.1
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 7.4e-113 411.0 278 74.5
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 9.6e-113 410.6 275 77.8
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 4.8e-112 408.3 234 87.2
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 4.8e-112 408.3 278 75.5
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 4.8e-112 408.3 250 80.0
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 8.1e-112 407.5 278 75.5
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.8e-111 406.4 327 66.7
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 2.4e-111 406.0 259 76.8
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 4.0e-111 405.2 254 78.3
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.2e-110 403.7 278 74.8
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 1.2e-110 403.7 261 75.9
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.4e-110 402.1 279 73.1
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 5.8e-110 401.4 281 71.2
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 7.6e-110 401.0 264 75.4
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.7e-109 399.8 273 74.7
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.2e-109 399.4 258 76.0
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.8e-109 398.7 274 74.8
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 4.9e-109 398.3 289 72.3
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 6.4e-109 397.9 275 74.9
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.9e-108 396.4 251 75.7
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 1.9e-108 396.4 252 76.2
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.2e-108 395.6 258 75.2
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 3.2e-108 395.6 255 76.5
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 3.5e-107 392.1 276 73.2
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 4.6e-107 391.7 250 74.0
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 6.0e-107 391.3 277 71.5
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.3e-106 390.2 271 74.5
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.8e-106 389.8 258 73.6
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.8e-106 389.8 250 78.0
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 2.3e-106 389.4 250 74.4
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 5.1e-106 388.3 267 70.4
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.9e-105 386.3 274 72.3
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 2.5e-105 386.0 253 73.1
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.5e-105 386.0 253 75.1
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 2.5e-105 386.0 272 71.3
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 4.3e-105 385.2 252 73.4
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.6e-104 383.3 253 74.7
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 2.1e-104 382.9 254 72.8
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 2.8e-104 382.5 253 72.3
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 6.2e-104 381.3 287 69.3
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 6.2e-104 381.3 276 71.4
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 8.2e-104 380.9 250 73.2
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 8.2e-104 380.9 259 71.0
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.1e-103 380.6 253 72.3
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.8e-103 379.8 259 71.0
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.8e-103 379.8 252 74.2
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 1.8e-103 379.8 253 72.3
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 4.0e-103 378.6 253 72.3
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 6.9e-103 377.9 254 72.0
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 6.9e-103 377.9 254 72.0
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 9.0e-103 377.5 280 70.4
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.3e-101 373.6 273 71.4
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.7e-101 373.2 253 72.7
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 2.9e-101 372.5 257 70.8
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.4e-100 370.2 257 71.6
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 7.1e-100 367.9 283 66.4
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 7.9e-99 364.4 278 66.2
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 5.7e-97 358.2 251 69.3
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 9.7e-97 357.5 259 68.3
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 2.9e-93 345.9 242 69.8
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 5.0e-93 345.1 192 89.1
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.4e-90 337.0 206 81.6
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.8e-90 336.7 228 73.7
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 5.1e-90 335.1 272 66.5
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 1.8e-87 326.6 452 43.6
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 1.0e-85 320.9 192 83.9
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 2.7e-83 312.8 226 69.5
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 2.2e-80 303.1 278 57.2
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.5e-78 297.0 188 80.9
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 2.2e-77 293.1 265 56.2
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 9.1e-71 271.2 153 86.9
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 3.6e-67 259.2 162 80.2
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 3.0e-66 256.1 223 58.3
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 7.5e-65 251.5 186 65.6
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 5.4e-63 245.4 183 68.3
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 2.0e-62 243.4 207 62.3
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 5.9e-62 241.9 207 61.8
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 6.8e-58 228.4 286 43.7
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 6.3e-56 221.9 130 83.1
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 9.1e-55 218.0 142 76.1
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 3.3e-52 209.5 269 46.1
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 2.2e-40 170.2 233 45.9
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.0e-34 149.4 121 62.8
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 8.9e-34 148.3 90 80.0
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.9e-32 143.3 92 77.2
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.9e-31 140.6 88 78.4
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 4.0e-26 122.9 71 87.3
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 2.2e-24 117.1 296 32.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 6.4e-24 115.5 261 34.5
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 4.6e-22 109.4 203 34.5
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 6.6e-21 105.5 94 60.6
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.8e-18 97.4 194 35.1
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.0e-17 94.0 57 77.2
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 3.4e-17 93.2 91 53.8
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.7e-13 80.9 46 87.0
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 1.1e-10 71.6 79 49.4
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 9.0e-10 68.6 64 53.1
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 2.9e-08 63.5 39 84.6
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 1.2e-06 58.2 57 54.4


User provided reference genes

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