Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1955 Acer truncatum HOM05D007034 ORTHO05D008665 2.8e-64 248.4 123 100.0
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 1.0e-29 133.7 179 44.7
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 3.3e-25 118.6 180 40.6
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 1.6e-24 116.3 179 40.2
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 2.8e-24 115.5 178 38.2
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 6.3e-24 114.4 176 39.2
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 6.3e-24 114.4 180 38.9
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 3.8e-21 105.1 171 42.1
COL.COLO4_37288 Corchorus olitorius HOM05D007034 ORTHO05D008665 1.4e-20 103.2 152 38.8
Cpa.g.sc13.203 Carica papaya HOM05D007034 ORTHO05D008665 2.5e-20 102.4 97 53.6
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 2.3e-18 95.9 159 39.6
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 2.5e-17 92.4 133 39.8
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 1.7e-16 89.7 129 41.1
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 4.8e-16 88.2 140 37.1
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 4.8e-16 88.2 149 42.3
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 6.3e-16 87.8 94 44.7
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 6.3e-16 87.8 160 35.0
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 8.2e-16 87.4 129 39.5
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 1.4e-15 86.7 124 40.3
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 2.4e-15 85.9 74 51.4
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 2.4e-15 85.9 148 37.2
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 3.1e-15 85.5 79 49.4
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 4.1e-15 85.1 130 38.5
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 4.1e-15 85.1 130 38.5
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 4.1e-15 85.1 130 38.5
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 6.9e-15 84.3 130 38.5
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 6.9e-15 84.3 118 40.7
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 1.5e-14 83.2 138 36.2
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 2.6e-14 82.4 137 38.7
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 3.4e-14 82.0 136 36.8
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 4.5e-14 81.6 141 34.8
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 4.5e-14 81.6 133 35.3
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 5.9e-14 81.3 142 33.8
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 5.9e-14 81.3 144 37.5
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 2.9e-13 79.0 140 32.9
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 2.9e-13 79.0 95 41.1
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 3.8e-13 78.6 117 40.2
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 3.8e-13 78.6 138 35.5
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 6.5e-13 77.8 81 46.9
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 8.5e-13 77.4 149 32.2
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 1.1e-12 77.0 94 43.6
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 1.4e-12 76.6 104 44.2
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 1.9e-12 76.3 94 42.6
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 1.9e-12 76.3 69 49.3
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 2.5e-12 75.9 80 47.5
TAR622G0913 Trochodendron aralioides HOM05D007034 ORTHO05D008665 5.5e-12 74.7 79 45.6
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 9.4e-12 73.9 89 46.1
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 2.1e-11 72.8 141 32.6
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 2.7e-11 72.4 87 44.8
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 6.1e-11 71.2 169 31.4
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 1.8e-10 69.7 139 31.7
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 1.8e-10 69.7 163 30.1
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 5.1e-10 68.2 127 33.1
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 6.7e-10 67.8 86 44.2
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 1.1e-09 67.0 148 30.4
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 1.1e-09 67.0 85 43.5
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 1.5e-09 66.6 58 58.6
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 1.5e-09 66.6 154 29.9
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 2.6e-09 65.9 86 40.7
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 5.7e-09 64.7 58 56.9
MBI11_g13135_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 2.8e-08 62.4 149 29.5
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 3.7e-08 62.0 150 27.3
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 4.8e-08 61.6 163 28.8
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 4.8e-08 61.6 94 35.1
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 8.2e-08 60.8 82 42.7
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 1.8e-07 59.7 73 41.1
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 3.1e-07 58.9 149 30.9
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 4.1e-07 58.5 43 58.1
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 4.1e-07 58.5 105 33.3
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 4.1e-07 58.5 82 42.7
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 7.0e-07 57.8 80 33.8
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 7.7e-06 54.3 53 49.1


User provided reference genes

Program Settings