Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 1.3e-310 1068.9 558 100.0
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 4.0e-203 711.8 577 66.4
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 8.4e-201 704.1 591 68.5
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 6.0e-199 698.0 576 66.8
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 1.6e-191 673.3 581 64.7
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 7.9e-191 671.0 578 64.9
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 7.4e-189 664.5 585 63.2
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 1.7e-177 626.7 610 58.2
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 2.9e-177 625.9 578 57.8
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 3.0e-174 615.9 492 64.2
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 3.9e-174 615.5 607 57.8
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 2.6e-170 602.8 612 56.7
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 2.6e-170 602.8 614 57.0
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.5e-165 587.0 486 63.8
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 7.4e-165 584.7 497 61.0
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 1.4e-155 553.9 591 53.1
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 2.4e-155 553.1 637 50.7
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 7.7e-154 548.1 497 59.4
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 1.7e-153 547.0 618 53.2
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 8.5e-153 544.7 589 54.8
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 2.7e-151 539.7 537 55.3
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 4.7e-151 538.9 549 54.5
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 4.7e-151 538.9 549 54.5
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 1.0e-150 537.7 577 54.8
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 7.0e-147 525.0 537 54.2
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 2.6e-146 523.1 659 47.8
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 4.5e-146 522.3 636 47.8
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 7.7e-146 521.5 468 59.0
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 2.7e-143 513.1 513 54.8
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 1.0e-142 511.1 534 54.1
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 2.3e-142 510.0 676 45.3
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 8.8e-142 508.1 561 50.8
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 8.8e-142 508.1 594 51.2
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 4.8e-140 502.3 668 46.1
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 6.3e-140 501.9 718 44.3
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 8.3e-140 501.5 668 46.0
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 1.4e-139 500.7 560 52.5
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 3.1e-139 499.6 560 51.8
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 9.1e-139 498.0 659 46.7
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 9.1e-139 498.0 567 51.7
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 1.2e-138 497.7 522 52.7
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 2.7e-138 496.5 574 50.7
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 3.5e-138 496.1 659 46.9
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 7.7e-138 495.0 575 49.2
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 1.0e-137 494.6 514 52.5
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.3e-137 494.2 565 51.2
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 1.7e-137 493.8 634 48.7
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 1.5e-136 490.7 695 43.2
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 7.2e-136 488.4 647 45.4
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 1.6e-135 487.3 588 48.5
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 3.6e-135 486.1 538 51.7
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 8.0e-135 485.0 769 42.1
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 1.0e-134 484.6 516 52.7
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 1.8e-134 483.8 527 51.6
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 2.3e-134 483.4 740 42.4
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 2.0e-133 480.3 559 49.6
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 2.6e-133 479.9 612 46.7
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 4.4e-133 479.2 555 49.9
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 5.7e-133 478.8 536 50.4
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 7.5e-133 478.4 549 51.0
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 1.7e-132 477.2 538 50.2
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 2.8e-132 476.5 543 49.7
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 4.9e-132 475.7 630 46.0
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 2.0e-130 470.3 543 50.5
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 2.7e-130 469.9 630 45.4
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.7e-129 467.2 567 48.0
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.7e-129 467.2 651 45.9
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 2.3e-129 466.8 698 43.7
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 2.9e-129 466.5 441 60.3
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 5.0e-129 465.7 624 46.0
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 6.6e-129 465.3 631 45.3
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 1.1e-128 464.5 628 45.1
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 1.1e-128 464.5 577 46.3
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 2.5e-128 463.4 627 45.8
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 2.3e-126 456.8 565 46.9
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.0e-125 453.8 569 47.3
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 5.7e-125 452.2 612 45.9
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 5.7e-125 452.2 765 39.9
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 7.5e-125 451.8 691 42.1
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 7.5e-125 451.8 719 40.6
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 8.3e-124 448.4 517 48.9
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 1.2e-122 444.5 669 42.8
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 1.2e-122 444.5 665 43.6
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.6e-122 444.1 504 48.0
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 6.6e-121 438.7 729 40.7
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 1.2e-119 434.5 638 44.5
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 8.0e-119 431.8 423 57.9
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.0e-118 431.4 599 43.2
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 1.4e-115 421.0 871 34.6
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 3.2e-115 419.9 571 46.8
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 4.6e-114 416.0 750 38.0
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 1.0e-113 414.8 645 41.2
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 3.6e-111 406.4 676 38.3
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 8.6e-105 385.2 503 44.9
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 1.9e-104 384.0 685 38.7
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 7.1e-99 365.5 763 34.2
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 1.6e-95 354.4 536 41.2
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 2.1e-95 354.0 455 48.6
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 5.2e-94 349.4 458 48.7
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.3e-89 334.7 202 79.2
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 2.4e-86 323.9 268 63.4
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 3.6e-79 300.1 280 56.8
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 2.0e-77 294.3 193 72.5
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.6e-74 284.6 212 70.8
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 8.7e-73 278.9 462 39.6
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 8.1e-71 272.3 462 38.7
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 3.8e-68 263.5 599 33.6
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 5.5e-67 259.6 709 29.8
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 7.1e-67 259.2 223 60.5
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 9.3e-67 258.8 460 37.8
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 1.0e-65 255.4 196 65.3
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 4.8e-63 246.5 277 52.3
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 3.1e-62 243.8 542 33.9
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 9.7e-48 195.7 434 33.6
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 4.8e-47 193.4 141 68.1
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 8.2e-47 192.6 231 48.1
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 2.5e-43 181.0 297 42.1
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 1.5e-40 171.8 195 43.1
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.3e-31 142.1 102 67.6
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-30 138.7 201 45.3
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 5.0e-28 130.2 232 35.8
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 1.9e-27 128.3 200 35.5
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 2.5e-27 127.9 308 33.1
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 3.2e-27 127.5 202 41.1
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 3.2e-27 127.5 202 41.1
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 1.2e-26 125.6 169 44.4
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 1.7e-20 105.1 142 40.1
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 6.5e-20 103.2 147 38.8
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 4.2e-19 100.5 68 67.6
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 7.2e-19 99.8 80 57.5
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 1.2e-16 92.4 134 41.8
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 4.5e-13 80.5 107 44.9
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 7.7e-13 79.7 49 75.5
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 5.0e-12 77.0 89 50.6
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 4.3e-11 73.9 115 38.3
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 4.7e-10 70.5 129 38.0
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 4.7e-10 70.5 129 38.0
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 6.1e-10 70.1 61 55.7
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 1.8e-09 68.6 56 66.1
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 2.3e-09 68.2 76 47.4
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 1.5e-08 65.5 124 33.9
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 2.0e-08 65.1 178 29.2
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 2.6e-08 64.7 81 32.1
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 4.4e-08 63.9 181 28.2
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 4.4e-08 63.9 181 28.2
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 9.8e-08 62.8 153 28.8
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 9.8e-08 62.8 181 27.6
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 1.3e-07 62.4 207 26.6
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 1.7e-07 62.0 176 27.8
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.9e-07 61.2 123 35.0
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 2.9e-07 61.2 242 23.6
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 2.9e-07 61.2 134 31.3
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 2.9e-07 61.2 178 26.4
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 3.7e-07 60.8 149 29.5
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 3.7e-07 60.8 123 34.1
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 3.7e-07 60.8 133 31.6
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 3.7e-07 60.8 161 27.3
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 4.9e-07 60.5 135 33.3
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 4.9e-07 60.5 123 34.1
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 4.9e-07 60.5 123 34.1
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 4.9e-07 60.5 64 48.4
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 6.4e-07 60.1 181 27.6
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 6.4e-07 60.1 181 27.6
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 6.4e-07 60.1 181 27.6
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 6.4e-07 60.1 97 37.1
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 6.4e-07 60.1 134 32.8
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 8.3e-07 59.7 122 31.1
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 1.4e-06 58.9 163 29.4
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 1.4e-06 58.9 122 33.6
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 2.4e-06 58.2 122 31.1
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 3.2e-06 57.8 117 32.5
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 5.4e-06 57.0 122 33.6
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 5.4e-06 57.0 128 33.6
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 7.0e-06 56.6 117 32.5
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 7.0e-06 56.6 159 27.7


User provided reference genes

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