Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1840 Acer truncatum HOM05D005378 ORTHO05D037884 7.0e-56 220.3 107 100.0
Atru.chr5.2888 Acer truncatum HOM05D005378 ORTHO05D037884 9.0e-19 97.1 49 95.9
Atru.chr3.3516 Acer truncatum HOM05D005378 ORTHO05D006986 2.9e-17 92.0 49 89.8
Atru.chr7.434 Acer truncatum HOM05D005378 ORTHO05D006986 4.9e-17 91.3 49 89.8
Atru.chr9.1492 Acer truncatum HOM05D005378 ORTHO05D006986 6.9e-11 70.9 37 91.9
FvH4_5g01090 Fragaria vesca HOM05D005378 ORTHO05D006986 3.4e-10 68.6 38 84.2
FAN08G1559 Fragaria x ananassa HOM05D005378 ORTHO05D006986 3.4e-10 68.6 38 84.2
FAN18G4319 Fragaria x ananassa HOM05D005378 ORTHO05D006986 3.4e-10 68.6 38 84.2
Potri.001G113800 Populus trichocarpa HOM05D005378 ORTHO05D006986 3.4e-10 68.6 38 84.2
Sabra01G0087000 Salix brachista HOM05D005378 ORTHO05D006986 3.4e-10 68.6 38 84.2
AL1G23870 Arabidopsis lyrata HOM05D005378 ORTHO05D006986 4.5e-10 68.2 47 70.2
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 5.8e-10 67.8 45 77.8
ATR0757G076 Amborella trichopoda HOM05D005378 ORTHO05D006986 5.8e-10 67.8 47 70.2
PGR031G2614 Punica granatum HOM05D005378 ORTHO05D006986 5.8e-10 67.8 38 84.2
THA.LOC104818281 Tarenaya hassleriana HOM05D005378 ORTHO05D006986 7.6e-10 67.4 38 84.2
Atru.chr3.15 Acer truncatum HOM05D000534 ORTHO05D000389 1.3e-09 66.6 35 91.4
AT1G12520 Arabidopsis thaliana HOM05D005378 ORTHO05D006986 1.3e-09 66.6 38 84.2
BcaB03g13183 Brassica carinata HOM05D005378 ORTHO05D006986 1.3e-09 66.6 38 84.2
BcaC07g41696 Brassica carinata HOM05D005378 ORTHO05D006986 1.3e-09 66.6 38 84.2
A08p32790 Brassica napus HOM05D005378 ORTHO05D006986 1.3e-09 66.6 38 84.2
A09p63820 Brassica napus HOM05D005378 ORTHO05D006986 1.3e-09 66.6 37 86.5
C08p15470 Brassica napus HOM05D005378 ORTHO05D006986 1.3e-09 66.6 38 84.2
C08p47320 Brassica napus HOM05D005378 ORTHO05D006986 1.3e-09 66.6 38 84.2
BolC8t49175H Brassica oleracea HOM05D005378 ORTHO05D006986 1.3e-09 66.6 38 84.2
BolC8t52274H Brassica oleracea HOM05D005378 ORTHO05D006986 1.3e-09 66.6 38 84.2
BraA08t35202Z Brassica rapa HOM05D005378 ORTHO05D006986 1.3e-09 66.6 38 84.2
BraA09t41728Z Brassica rapa HOM05D005378 ORTHO05D006986 1.3e-09 66.6 37 86.5
Carub.0001s1221 Capsella rubella HOM05D005378 ORTHO05D006986 1.3e-09 66.6 38 84.2
CARHR012800 Cardamine hirsuta HOM05D005378 ORTHO05D006986 1.3e-09 66.6 47 68.1
Thhalv10008232m.g Eutrema salsugineum HOM05D005378 ORTHO05D006986 1.3e-09 66.6 38 84.2
RcHm_v2.0_Chr7g0200231 Rosa chinensis HOM05D005378 ORTHO05D006986 1.3e-09 66.6 38 81.6
Sed0008997 Sechium edule HOM05D005378 ORTHO05D006986 1.3e-09 66.6 38 84.2
Ciclev10021134m.g Citrus clementina HOM05D005378 ORTHO05D006986 1.7e-09 66.2 38 81.6
Eucgr.E00505 Eucalyptus grandis HOM05D005378 ORTHO05D006986 1.7e-09 66.2 38 81.6
Aa31LG2G450 Aethionema arabicum HOM05D005378 ORTHO05D006986 2.2e-09 65.9 38 84.2
arahy.Tifrunner.gnm1.ann1.1K1ZSN Arachis hypogaea HOM05D005378 ORTHO05D006986 2.2e-09 65.9 38 84.2
arahy.Tifrunner.gnm1.ann1.2GQ0W5 Arachis hypogaea HOM05D005378 ORTHO05D006986 2.2e-09 65.9 38 84.2
Ca_12295_v3 Cicer arietinum L. HOM05D005378 ORTHO05D006986 2.2e-09 65.9 38 84.2
Glyma.05G055000 Glycine max HOM05D005378 ORTHO05D006986 2.2e-09 65.9 38 84.2
Lalb_Chr05g0225201 Lupinus albus HOM05D005378 ORTHO05D006986 2.2e-09 65.9 38 84.2
Phvul.003G217000 Phaseolus vulgaris HOM05D005378 ORTHO05D006986 2.2e-09 65.9 38 84.2
Psat4g069440 Pisum sativum HOM05D005378 ORTHO05D006986 2.2e-09 65.9 38 84.2
Potri.003G118400 Populus trichocarpa HOM05D005378 ORTHO05D006986 2.2e-09 65.9 38 81.6
Rhsim10G0118700 Rhododendron simsii HOM05D005378 ORTHO05D006986 2.2e-09 65.9 38 84.2
Cc08_g13620 Coffea canephora HOM05D005378 ORTHO05D006986 2.9e-09 65.5 38 81.6
CANSAT21G0731 Cannabis sativa HOM05D005378 ORTHO05D006986 3.8e-09 65.1 38 81.6
MD04G1072900 Malus domestica HOM05D005378 ORTHO05D006986 3.8e-09 65.1 38 81.6
Nitab4.5_0012494g0030 Nicotiana tabacum HOM05D005378 ORTHO05D006986 3.8e-09 65.1 38 81.6
Peaxi162Scf00620g00241 Petunia axillaris HOM05D005378 ORTHO05D006986 3.8e-09 65.1 38 81.6
Solyc08g079830.4 Solanum lycopersicum HOM05D005378 ORTHO05D006986 3.8e-09 65.1 38 81.6
PGSC0003DMG400003914 Solanum tuberosum HOM05D005378 ORTHO05D006986 3.8e-09 65.1 38 81.6
GSVIVG01019902001 Vitis vinifera HOM05D005378 ORTHO05D006986 3.8e-09 65.1 38 81.6
Nn6g34347 Nelumbo nucifera HOM05D005378 ORTHO05D006986 4.9e-09 64.7 38 81.6
Prupe.5G084900 Prunus persica HOM05D005378 ORTHO05D006986 4.9e-09 64.7 38 81.6
TAR629G1125 Trochodendron aralioides HOM05D005378 ORTHO05D006986 4.9e-09 64.7 38 81.6
CAN.G630.23 Capsicum annuum HOM05D005378 ORTHO05D006986 6.5e-09 64.3 38 81.6
Lj2A203G52 Lonicera japonica HOM05D005378 ORTHO05D006986 6.5e-09 64.3 38 81.6
MD00G1069800 Malus domestica HOM05D005378 ORTHO05D006986 6.5e-09 64.3 38 78.9
Medtr4g101820 Medicago truncatula HOM05D005378 ORTHO05D006986 6.5e-09 64.3 38 81.6
PSO782G2812 Papaver somniferum HOM05D005378 ORTHO05D006986 6.5e-09 64.3 38 81.6
TPR.G37594 Trifolium pratense HOM05D005378 ORTHO05D006986 6.5e-09 64.3 38 81.6
VMungo0251G1120 Vigna mungo HOM05D005378 ORTHO05D006986 6.5e-09 64.3 38 81.6
Lj4g0009345 Lotus japonicus HOM05D005378 ORTHO05D006986 8.4e-09 63.9 38 81.6
Nitab4.5_0005167g0010 Nicotiana tabacum HOM05D005378 ORTHO05D006986 8.4e-09 63.9 38 78.9
Sp1g11100 Schrenkiella parvula HOM05D005378 ORTHO05D006986 8.4e-09 63.9 38 81.6
Sc01g0008970 Simmondsia chinensis HOM05D005378 ORTHO05D006986 8.4e-09 63.9 38 78.9
Cfa012056 Carpinus fangiana HOM05D005378 ORTHO05D006986 1.1e-08 63.5 38 78.9
Haze_09001 Corylus avellana HOM05D005378 ORTHO05D006986 1.1e-08 63.5 38 78.9
Actinidia14494 Actinidia chinensis HOM05D005378 ORTHO05D006986 1.4e-08 63.2 38 78.9
Aqoxy7G00527 Aquilegia oxysepala HOM05D005378 ORTHO05D006986 1.4e-08 63.2 38 76.3
Manes.02G028800 Manihot esculenta HOM05D005378 ORTHO05D006986 1.4e-08 63.2 38 76.3
PGR042G0099 Punica granatum HOM05D005378 ORTHO05D006986 1.4e-08 63.2 38 73.7
Thecc.03G266200 Theobroma cacao HOM05D005378 ORTHO05D006986 1.4e-08 63.2 38 78.9
CsaV3_3G003410 Cucumis sativus L. HOM05D005378 ORTHO05D006986 1.9e-08 62.8 38 76.3
QL12p016275 Quercus lobata HOM05D005378 ORTHO05D006986 1.9e-08 62.8 38 76.3
Sopen08g028190 Solanum pennellii HOM05D005378 ORTHO05D006986 1.9e-08 62.8 38 78.9
Cpa.g.sc29.47 Carica papaya HOM05D005378 ORTHO05D006986 2.5e-08 62.4 38 78.9
DCAR_006775 Daucus carota HOM05D005378 ORTHO05D006986 2.5e-08 62.4 38 76.3
ECA233G4179 Erigeron canadensis HOM05D005378 ORTHO05D006986 2.5e-08 62.4 38 78.9
HanXRQChr02g0047721 Helianthus annuus HOM05D005378 ORTHO05D006986 2.5e-08 62.4 37 81.1
Oeu001912.1 Olea europaea HOM05D005378 ORTHO05D006986 2.5e-08 62.4 38 78.9
PSO478G1428 Papaver somniferum HOM05D005378 ORTHO05D006986 2.5e-08 62.4 38 78.9
SEGI_32640 Sequoiadendron giganteum HOM05D005378 ORTHO05D006986 2.5e-08 62.4 38 76.3
SGA_v2.0_scaffold37G14872 Striga asiatica HOM05D005378 ORTHO05D006986 3.2e-08 62.0 38 76.3
BcaB08g34272 Brassica carinata HOM05D005378 ORTHO05D006986 4.2e-08 61.6 38 78.9
CSS0049222 Camellia sinensis var. sinensis HOM05D005378 ORTHO05D006986 4.2e-08 61.6 36 80.6
Lsat_1_v5_gn_6_10640 Lactuca sativa HOM05D005378 ORTHO05D006986 4.2e-08 61.6 38 76.3
AUR62010552 Chenopodium quinoa HOM05D005378 ORTHO05D006986 5.5e-08 61.2 38 76.3
AUR62017340 Chenopodium quinoa HOM05D005378 ORTHO05D006986 5.5e-08 61.2 38 76.3
SalBow6G7208 Salvia bowleyana HOM05D005378 ORTHO05D006986 5.5e-08 61.2 38 76.3
MSTRG.25561 Avicennia marina HOM05D005378 ORTHO05D006986 7.1e-08 60.8 38 78.9
CiPaw.11G143700 Carya illinoinensis HOM05D005378 ORTHO05D006986 7.1e-08 60.8 38 73.7
Migut.A00880 Erythranthe guttata HOM05D005378 ORTHO05D006986 7.1e-08 60.8 38 73.7
Ah.12g057930 Amaranthus hybridus HOM05D005378 ORTHO05D006986 9.3e-08 60.5 38 76.3
MSTRG.12037 Avicennia marina HOM05D005378 ORTHO05D006986 9.3e-08 60.5 38 76.3
Dinv37717 Davidia involucrata HOM05D005378 ORTHO05D006986 9.3e-08 60.5 38 78.9
Gohir.A08G176000 Gossypium hirsutum HOM05D005378 ORTHO05D006986 9.3e-08 60.5 38 76.3
Gohir.D08G194800 Gossypium hirsutum HOM05D005378 ORTHO05D006986 9.3e-08 60.5 38 76.3
Gorai.004G205500 Gossypium raimondii HOM05D005378 ORTHO05D006986 9.3e-08 60.5 38 76.3
SMO201G0146 Selaginella moellendorffii HOM05D005378 ORTHO05D006986 9.3e-08 60.5 38 76.3
CDE01G0558 Ceratophyllum demersum HOM05D005378 ORTHO05D006986 1.2e-07 60.1 38 76.3
Duzib205G1930 Durio zibethinus HOM05D005378 ORTHO05D006986 1.2e-07 60.1 38 73.7
Sabra03G0082400 Salix brachista HOM05D005378 ORTHO05D006986 1.2e-07 60.1 38 76.3
Zm00001eb073490 Zea mays HOM05D005378 ORTHO05D006986 1.2e-07 60.1 38 73.7
Hma1.2p1_2135F.1_g314860 Hydrangea macrophylla HOM05D005378 ORTHO05D006986 1.6e-07 59.7 38 76.3
Hund14698 Selenicereus undatus HOM05D005378 ORTHO05D006986 1.6e-07 59.7 38 76.3
TWI60G1116 Tripterygium wilfordii HOM05D005378 ORTHO05D006986 2.1e-07 59.3 38 73.7
HPP92_021079 Vanilla planifolia HOM05D005378 ORTHO05D006986 2.7e-07 58.9 64 54.7
BcaC06g31923 Brassica carinata HOM05D005378 ORTHO05D006986 3.5e-07 58.5 45 62.2
BcaC04g22737 Brassica carinata HOM05D005378 ORTHO05D006986 6.0e-07 57.8 39 66.7
C09p15780 Brassica napus HOM05D005378 ORTHO05D006986 6.0e-07 57.8 39 66.7
BolC9t54490H Brassica oleracea HOM05D005378 ORTHO05D006986 6.0e-07 57.8 39 66.7
Oeu001910.1 Olea europaea HOM05D005378 ORTHO05D006986 6.0e-07 57.8 38 71.1
EL10Ac5g12674 Beta vulgaris HOM05D005378 ORTHO05D006986 7.9e-07 57.4 38 73.7
Os04g0573200 Oryza sativa ssp. japonica HOM05D005378 ORTHO05D006986 7.9e-07 57.4 38 73.7
Mapoly0127s0018 Marchantia polymorpha HOM05D005378 ORTHO05D006986 1.0e-06 57.0 43 62.8
Pp3c21_8100 Physcomitrium patens HOM05D005378 ORTHO05D006986 1.0e-06 57.0 42 64.3
Atru.chr8.2337 Acer truncatum HOM05D006201 ORTHO05D007178 1.3e-06 56.6 28 85.7
CBR_g27778 Chara braunii HOM05D005378 ORTHO05D006986 1.3e-06 56.6 66 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1340 Anthoceros agrestis HOM05D005378 ORTHO05D006986 1.8e-06 56.2 56 58.9
unitig_744.g24326 Utricularia gibba HOM05D005378 ORTHO05D006986 3.9e-06 55.1 38 65.8


User provided reference genes

Program Settings