Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 2.0e-103 379.0 185 100.0
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-93 345.9 185 93.0
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 2.0e-82 309.3 169 92.3
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-61 240.0 176 71.6
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 8.4e-57 224.2 119 92.4
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 2.2e-36 156.4 182 50.0
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-35 153.3 180 50.0
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 5.9e-34 148.3 183 46.4
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 1.9e-32 143.3 180 48.9
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 3.2e-32 142.5 186 46.2
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 3.2e-32 142.5 182 45.6
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 4.2e-32 142.1 177 47.5
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 4.2e-32 142.1 177 48.6
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 9.4e-32 141.0 177 46.9
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 1.2e-31 140.6 180 45.6
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 2.1e-31 139.8 180 47.8
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 2.1e-31 139.8 180 47.8
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 4.7e-31 138.7 177 46.9
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 6.1e-31 138.3 185 47.0
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 7.9e-31 137.9 184 45.1
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 1.0e-30 137.5 181 46.4
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 1.0e-30 137.5 177 45.8
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 1.0e-30 137.5 182 46.2
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 3.0e-30 136.0 180 45.0
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 3.0e-30 136.0 177 45.2
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 3.9e-30 135.6 181 47.0
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 5.2e-30 135.2 177 45.8
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 5.2e-30 135.2 177 45.8
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 5.2e-30 135.2 180 45.0
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 6.7e-30 134.8 198 40.4
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 6.7e-30 134.8 177 46.3
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 6.7e-30 134.8 177 46.3
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-29 134.0 185 41.1
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 1.5e-29 133.7 181 45.3
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 1.5e-29 133.7 177 45.8
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 2.6e-29 132.9 177 45.2
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 3.3e-29 132.5 177 44.1
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 5.7e-29 131.7 181 43.6
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 5.7e-29 131.7 180 45.6
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 7.4e-29 131.3 177 44.6
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 9.7e-29 131.0 177 42.4
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 9.7e-29 131.0 182 43.4
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 9.7e-29 131.0 188 43.1
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 9.7e-29 131.0 179 46.9
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 1.7e-28 130.2 176 46.6
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 2.2e-28 129.8 180 42.8
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 2.8e-28 129.4 183 45.9
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 4.8e-28 128.6 172 45.3
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 6.3e-28 128.3 177 44.6
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 6.3e-28 128.3 177 44.1
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 8.2e-28 127.9 182 42.3
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.1e-27 127.5 177 44.1
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 1.8e-27 126.7 169 46.7
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 1.8e-27 126.7 169 46.7
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 2.4e-27 126.3 164 45.1
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 2.4e-27 126.3 182 44.0
Atru.chr6.94 Acer truncatum HOM05D004737 ORTHO05D005623 7.0e-27 124.8 64 95.3
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.2e-26 124.0 179 42.5
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.6e-26 123.6 177 41.8
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.6e-26 123.6 177 41.8
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 2.0e-26 123.2 182 41.8
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 7.7e-26 121.3 169 42.6
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 3.8e-25 119.0 177 42.4
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 3.8e-25 119.0 177 42.4
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 3.8e-25 119.0 188 42.0
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 5.0e-25 118.6 180 40.6
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 5.0e-25 118.6 177 39.0
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 5.0e-25 118.6 177 42.4
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 5.0e-25 118.6 184 39.7
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 6.5e-25 118.2 183 40.4
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 8.5e-25 117.9 177 38.4
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 1.1e-24 117.5 182 40.7
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 1.1e-24 117.5 182 40.7
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 2.5e-24 116.3 183 41.0
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 2.5e-24 116.3 183 41.0
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 3.2e-24 115.9 183 41.0
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 3.2e-24 115.9 183 41.0
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 3.2e-24 115.9 183 41.0
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 4.2e-24 115.5 183 41.0
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 4.2e-24 115.5 173 41.6
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 4.2e-24 115.5 214 37.4
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 5.5e-24 115.2 180 39.4
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 7.2e-24 114.8 169 39.6
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 7.2e-24 114.8 183 41.5
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 9.4e-24 114.4 183 41.0
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 9.4e-24 114.4 183 40.4
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 9.4e-24 114.4 160 42.5
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 9.4e-24 114.4 177 40.1
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 1.2e-23 114.0 183 39.9
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 1.2e-23 114.0 180 42.2
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 1.2e-23 114.0 180 42.2
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 1.2e-23 114.0 181 38.7
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 1.6e-23 113.6 180 42.2
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 2.7e-23 112.8 188 39.9
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 3.6e-23 112.5 183 39.3
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 4.7e-23 112.1 183 39.9
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 4.7e-23 112.1 182 37.4
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 6.1e-23 111.7 132 51.5
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 6.1e-23 111.7 182 40.1
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 8.0e-23 111.3 177 41.2
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 1.0e-22 110.9 179 41.9
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 1.4e-22 110.5 182 40.7
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 1.8e-22 110.2 186 38.7
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 3.0e-22 109.4 178 41.0
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 6.7e-22 108.2 189 37.6
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 1.5e-21 107.1 150 43.3
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 4.4e-21 105.5 186 36.6
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 5.7e-21 105.1 162 40.1
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 9.7e-21 104.4 187 36.4
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 8.2e-20 101.3 187 35.8
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 2.4e-19 99.8 176 37.5
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-18 97.4 181 37.6
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 1.3e-17 94.0 130 44.6
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.3e-17 94.0 187 38.0
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-16 90.1 183 35.5
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-16 90.1 181 33.7
Atru.chr8.1290 Acer truncatum HOM05D004737 ORTHO05D005623 4.2e-16 89.0 184 35.3
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 5.5e-16 88.6 188 32.4
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 7.2e-16 88.2 188 33.0
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 9.4e-16 87.8 182 33.0
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 1.2e-15 87.4 124 41.1
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 2.7e-15 86.3 176 36.9
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 6.1e-15 85.1 184 34.8
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-13 80.5 149 36.2
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 4.8e-12 75.5 150 32.0
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 1.8e-11 73.6 119 38.7
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 3.1e-11 72.8 123 37.4
Atru.chr12.1688 Acer truncatum HOM05D004737 ORTHO05D005623 9.1e-11 71.2 133 34.6
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 1.2e-10 70.9 159 32.1
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 7.7e-10 68.2 159 30.8
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 6.5e-09 65.1 72 47.2
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 8.6e-09 64.7 117 37.6
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 8.6e-09 64.7 145 29.7
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-08 63.9 134 32.8
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-08 63.5 106 39.6
Atru.chr5.2738 Acer truncatum HOM05D004737 ORTHO05D005623 2.5e-08 63.2 140 32.1
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 2.5e-08 63.2 162 29.0
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 2.5e-08 63.2 76 51.3
Atru.chr1.4019 Acer truncatum HOM05D002880 ORTHO05D005623 9.5e-08 61.2 109 35.8
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.2e-07 60.8 162 29.0
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-07 60.5 180 29.4
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 4.7e-07 58.9 76 43.4
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 1.4e-06 57.4 119 35.3
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 2.3e-06 56.6 76 48.7


User provided reference genes

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