Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 2.1e-175 619.0 326 100.0
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 1.6e-74 283.9 203 77.3
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 2.8e-71 273.1 209 71.8
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 4.5e-69 265.8 202 71.3
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 5.8e-69 265.4 202 72.3
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 3.8e-68 262.7 209 68.9
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 1.1e-67 261.2 227 66.1
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.1e-67 261.2 202 70.3
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 4.2e-67 259.2 202 70.8
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.6e-66 257.3 227 67.8
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 2.1e-66 256.9 238 65.1
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 3.5e-66 256.1 226 68.1
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 7.9e-66 255.0 202 69.3
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 3.3e-64 249.6 231 61.9
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 5.6e-64 248.8 202 69.8
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 1.6e-63 247.3 202 69.8
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 3.7e-63 246.1 202 69.8
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 3.7e-63 246.1 202 67.8
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 3.7e-63 246.1 204 68.1
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 8.1e-63 245.0 204 67.6
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 8.1e-63 245.0 204 68.6
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 8.1e-63 245.0 210 63.8
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 1.8e-62 243.8 204 68.1
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 2.4e-62 243.4 203 67.0
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 5.3e-62 242.3 208 67.8
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 9.0e-62 241.5 226 62.8
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 2.0e-61 240.4 204 67.6
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 2.0e-61 240.4 226 63.7
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 5.8e-61 238.8 228 61.8
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 1.7e-60 237.3 204 68.6
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.9e-60 236.5 213 65.3
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 4.9e-60 235.7 201 67.2
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 4.2e-59 232.6 226 61.1
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 5.5e-59 232.3 226 61.1
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 2.1e-58 230.3 229 62.9
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 3.0e-57 226.5 243 56.0
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 3.0e-57 226.5 202 64.4
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 6.7e-57 225.3 227 58.1
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 1.9e-56 223.8 209 63.2
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 4.3e-56 222.6 202 64.4
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 9.6e-56 221.5 202 63.4
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 1.6e-55 220.7 227 61.2
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 2.1e-55 220.3 201 63.2
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.1e-55 220.3 202 65.3
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 2.8e-55 219.9 215 60.0
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 2.8e-55 219.9 229 61.6
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 3.7e-55 219.5 203 63.5
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 8.2e-55 218.4 202 64.9
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 1.4e-54 217.6 200 63.0
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 1.4e-54 217.6 205 61.5
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.8e-54 217.2 231 58.0
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.8e-54 217.2 226 58.0
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 2.4e-54 216.9 201 63.2
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 2.4e-54 216.9 205 62.0
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.2e-53 214.5 204 64.7
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 1.5e-53 214.2 202 63.9
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 1.3e-52 211.1 226 57.5
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 1.3e-52 211.1 205 64.4
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 2.2e-52 210.3 232 56.5
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 2.9e-52 209.9 253 53.0
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 1.9e-51 207.2 228 55.7
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 4.2e-51 206.1 202 61.4
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 1.6e-50 204.1 218 58.3
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.0e-49 201.4 175 66.9
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.0e-49 201.4 204 58.8
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 1.3e-49 201.1 227 55.5
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.3e-49 200.3 173 65.9
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.3e-49 200.3 173 65.9
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 5.1e-49 199.1 206 58.7
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 5.1e-49 199.1 259 51.7
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 8.7e-49 198.4 198 59.1
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.1e-48 198.0 208 57.7
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 1.9e-48 197.2 228 56.6
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.5e-48 196.8 204 58.8
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 3.3e-48 196.4 201 57.2
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 5.7e-48 195.7 132 84.1
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 5.7e-48 195.7 200 57.5
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 7.4e-48 195.3 200 57.5
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 9.7e-48 194.9 203 57.1
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 9.7e-48 194.9 208 54.3
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 1.6e-47 194.1 204 56.9
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 6.3e-47 192.2 228 57.9
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 6.3e-47 192.2 229 53.7
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 8.2e-47 191.8 202 55.4
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 6.9e-46 188.7 209 54.5
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 1.2e-45 188.0 202 55.4
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 1.2e-45 188.0 209 54.5
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 2.0e-45 187.2 213 56.8
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 4.5e-45 186.0 204 56.4
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 1.3e-44 184.5 202 56.4
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 1.3e-44 184.5 204 55.9
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.3e-44 184.5 225 56.0
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 2.2e-44 183.7 175 58.9
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 2.9e-44 183.3 227 52.0
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 2.9e-44 183.3 306 42.5
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 1.1e-43 181.4 204 55.4
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 1.4e-43 181.0 203 54.2
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 3.2e-43 179.9 195 55.9
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 1.2e-42 177.9 204 54.4
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 1.2e-42 177.9 204 54.4
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 7.9e-42 175.3 202 55.0
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.0e-41 174.9 208 52.9
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 2.3e-41 173.7 203 54.2
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 3.9e-41 172.9 203 54.7
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 1.1e-40 171.4 200 53.5
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 1.9e-40 170.6 203 53.2
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 1.9e-40 170.6 203 53.2
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 1.9e-40 170.6 203 53.2
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 2.5e-40 170.2 203 52.2
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 2.5e-40 170.2 203 52.2
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 4.3e-40 169.5 234 47.0
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 4.3e-40 169.5 234 47.0
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 1.3e-39 167.9 202 52.5
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 2.8e-39 166.8 200 52.5
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 6.3e-39 165.6 209 50.2
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 1.1e-38 164.9 213 51.6
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 1.8e-38 164.1 198 53.0
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 4.1e-38 162.9 202 48.0
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 6.9e-38 162.2 142 67.6
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 2.9e-36 156.8 204 47.1
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 6.5e-36 155.6 289 41.5
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 5.5e-35 152.5 197 50.3
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 5.5e-35 152.5 197 50.3
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 7.9e-34 148.7 142 59.9
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 3.9e-33 146.4 139 60.4
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 1.1e-30 138.3 230 44.8
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 1.4e-30 137.9 85 83.5
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 5.0e-28 129.4 202 45.0
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 5.5e-27 125.9 157 49.7
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 1.6e-26 124.4 148 54.7
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 6.1e-26 122.5 197 44.2
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 7.7e-21 105.5 231 38.1
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 2.9e-20 103.6 132 53.0
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 1.4e-17 94.7 118 52.5
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 4.4e-16 89.7 74 60.8
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 5.7e-16 89.4 197 37.1
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 7.5e-16 89.0 146 43.2
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 2.8e-15 87.0 89 56.2
Lj5A253T37 Lonicera japonica HOM05D012292 ORTHO05D012234 2.2e-12 77.4 251 34.3
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 4.2e-11 73.2 80 56.2
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 3.0e-09 67.0 63 54.0
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 1.5e-08 64.7 40 75.0
Lj5A252G43 Lonicera japonica HOM05D012292 ORTHO05D012234 3.7e-07 60.1 81 43.2
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 4.8e-07 59.7 55 56.4
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 4.8e-07 59.7 55 56.4
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 4.1e-06 56.6 73 42.5
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 7.0e-06 55.8 139 33.8


User provided reference genes

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