Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 1.6e-62 242.7 132 100.0
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 1.1e-47 193.4 132 84.1
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 2.5e-39 165.6 131 68.7
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 1.3e-35 153.3 131 66.4
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 2.2e-35 152.5 131 66.4
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 1.1e-34 150.2 127 67.7
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.1e-34 150.2 131 62.6
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.4e-34 149.8 131 67.2
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.5e-34 149.1 124 67.7
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 3.2e-34 148.7 131 63.4
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 4.2e-34 148.3 124 67.7
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 4.2e-34 148.3 124 67.7
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 4.2e-34 148.3 124 67.7
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 1.2e-33 146.7 124 67.7
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.1e-33 146.0 128 65.6
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 2.1e-33 146.0 124 67.7
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 4.6e-33 144.8 131 64.1
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 4.6e-33 144.8 131 64.9
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 6.1e-33 144.4 128 66.4
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 7.9e-33 144.1 128 64.1
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 3.0e-32 142.1 132 62.9
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 3.0e-32 142.1 129 62.8
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 6.7e-32 141.0 128 64.1
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 1.1e-31 140.2 124 66.9
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 1.5e-31 139.8 155 54.8
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 2.5e-31 139.0 131 62.6
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 3.3e-31 138.7 131 59.5
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 4.3e-31 138.3 124 66.1
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 5.7e-31 137.9 128 62.5
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 5.7e-31 137.9 131 60.3
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 7.4e-31 137.5 130 59.2
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 6.3e-30 134.4 131 64.9
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 1.1e-29 133.7 131 58.8
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 2.4e-29 132.5 131 59.5
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 1.2e-28 130.2 131 59.5
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 2.0e-28 129.4 131 58.0
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.0e-28 129.4 131 59.5
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 3.4e-28 128.6 131 58.8
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 5.9e-28 127.9 124 61.3
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 5.9e-28 127.9 129 62.0
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 7.7e-28 127.5 131 56.5
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 7.7e-28 127.5 131 61.8
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 2.2e-27 125.9 129 61.2
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 2.2e-27 125.9 132 58.3
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 4.2e-26 121.7 131 57.3
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 5.5e-26 121.3 130 56.9
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 2.1e-25 119.4 121 60.3
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 4.7e-25 118.2 131 56.5
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 2.3e-24 115.9 131 57.3
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 2.3e-24 115.9 129 55.8
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 2.3e-24 115.9 130 53.8
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.3e-24 115.9 132 53.8
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 3.0e-24 115.5 130 53.8
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 3.9e-24 115.2 123 56.1
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 3.9e-24 115.2 124 57.3
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 5.1e-24 114.8 131 52.7
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 8.8e-24 114.0 130 50.8
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 2.6e-23 112.5 130 54.6
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 9.7e-23 110.5 127 50.4
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 1.7e-22 109.8 123 53.7
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 2.2e-22 109.4 131 53.4
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 4.8e-22 108.2 123 53.7
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 4.8e-22 108.2 123 53.7
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 6.3e-22 107.8 107 58.9
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 6.3e-22 107.8 107 58.9
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 8.2e-22 107.5 130 51.5
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 1.1e-21 107.1 125 50.4
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 1.1e-21 107.1 140 47.9
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.4e-21 105.9 124 52.4
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 5.3e-21 104.8 130 51.5
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 5.3e-21 104.8 128 53.1
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 6.9e-21 104.4 130 50.8
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.2e-20 103.6 124 53.2
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.2e-20 103.6 131 51.1
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 3.4e-20 102.1 112 53.6
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 7.7e-20 100.9 130 48.5
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 1.3e-19 100.1 101 56.4
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 1.7e-19 99.8 103 57.3
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 3.8e-19 98.6 130 45.4
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 3.8e-19 98.6 124 51.6
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 5.0e-19 98.2 125 52.8
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 6.5e-19 97.8 124 50.0
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 8.5e-19 97.4 125 53.6
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.4e-18 96.7 125 53.6
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 1.9e-18 96.3 124 50.8
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 2.5e-18 95.9 125 49.6
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 4.2e-18 95.1 131 47.3
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 5.5e-18 94.7 122 50.0
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 5.5e-18 94.7 91 58.2
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 9.4e-18 94.0 131 48.1
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 1.6e-17 93.2 123 51.2
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 2.1e-17 92.8 101 52.5
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 2.1e-17 92.8 171 39.8
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 2.1e-17 92.8 171 39.8
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 2.7e-17 92.4 124 46.8
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 2.7e-17 92.4 125 47.2
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 2.7e-17 92.4 125 47.2
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 6.1e-17 91.3 125 48.8
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 6.1e-17 91.3 125 48.8
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 6.1e-17 91.3 125 48.8
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 6.1e-17 91.3 127 49.6
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 8.0e-17 90.9 117 50.4
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 1.4e-16 90.1 127 48.8
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 1.8e-16 89.7 124 45.2
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 1.8e-16 89.7 121 49.6
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 3.0e-16 89.0 96 52.1
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 5.2e-16 88.2 121 47.1
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 5.2e-16 88.2 124 46.0
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 1.1e-15 87.0 133 48.9
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 2.0e-15 86.3 121 47.1
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 3.3e-15 85.5 128 43.8
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 5.7e-15 84.7 120 45.8
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 5.7e-15 84.7 118 45.8
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 5.7e-15 84.7 128 46.1
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 2.2e-14 82.8 116 47.4
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 2.2e-14 82.8 127 51.2
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 2.8e-14 82.4 124 44.4
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 8.2e-14 80.9 124 43.5
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 8.2e-14 80.9 124 43.5
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 8.2e-14 80.9 124 43.5
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 2.4e-13 79.3 124 42.7
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 1.6e-12 76.6 118 48.3
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.5e-10 70.1 45 80.0
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 1.5e-10 70.1 129 38.8
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 1.9e-10 69.7 125 40.0
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 3.2e-10 68.9 45 80.0
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 7.2e-10 67.8 50 74.0
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 9.4e-10 67.4 127 41.7
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 2.1e-09 66.2 90 45.6
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 1.8e-08 63.2 125 36.0
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 4.0e-08 62.0 83 49.4
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 4.0e-08 62.0 83 49.4
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 4.0e-08 62.0 120 34.2
Ah.13g066130 Amaranthus hybridus HOM05D004799 ORTHO05D005500 4.4e-07 58.5 67 52.2
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.7e-06 56.6 85 47.1
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.7e-06 56.6 84 40.5
Lsat_1_v5_gn_2_102640 Lactuca sativa HOM05D004799 ORTHO05D005500 3.7e-06 55.5 50 64.0
Lsat_1_v5_gn_8_72721 Lactuca sativa HOM05D004799 ORTHO05D005500 3.7e-06 55.5 50 64.0


User provided reference genes

Program Settings