Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 4.9e-305 1050.4 569 100.0
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 1.8e-214 749.6 568 70.4
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.8e-182 643.3 574 63.4
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 4.9e-180 635.2 576 62.8
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 5.0e-177 625.2 573 60.9
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 1.2e-175 620.5 573 59.3
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 6.8e-174 614.8 567 58.9
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 9.9e-173 610.9 572 58.7
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 3.7e-172 609.0 574 60.6
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 8.3e-172 607.8 573 60.0
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.5e-170 602.4 573 57.9
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 7.8e-170 601.3 640 55.3
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 2.3e-169 599.7 572 58.7
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 3.0e-169 599.4 558 59.9
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.5e-168 597.0 572 57.9
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 8.9e-166 587.8 572 56.5
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.1e-163 580.9 572 55.9
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 3.2e-163 579.3 594 55.9
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 9.2e-163 577.8 580 56.6
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.3e-160 568.9 572 57.7
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 7.3e-160 568.2 573 57.4
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 5.2e-158 562.0 565 55.4
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.4e-157 559.3 574 54.9
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 5.8e-157 558.5 574 55.7
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.8e-156 555.8 567 57.3
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.7e-154 549.7 571 55.0
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 2.7e-154 549.7 540 54.8
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 3.5e-154 549.3 580 53.4
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 3.5e-154 549.3 576 53.5
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.0e-153 546.2 577 55.8
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 5.1e-153 545.4 591 53.8
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 9.6e-152 541.2 570 53.7
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.3e-151 540.8 567 56.1
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.1e-150 537.7 570 53.3
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.2e-149 534.3 589 55.7
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 4.5e-149 532.3 572 51.2
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 4.5e-149 532.3 572 51.2
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.2e-148 530.0 575 54.4
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 6.4e-148 528.5 571 52.5
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 8.4e-148 528.1 566 53.7
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.4e-147 526.6 575 54.4
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.2e-147 526.2 575 54.1
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 9.3e-147 524.6 575 56.0
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.2e-146 524.2 575 53.7
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 6.0e-146 521.9 572 53.1
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 2.3e-145 520.0 573 52.5
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 3.0e-145 519.6 575 49.9
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 5.1e-145 518.8 542 52.4
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 1.1e-144 517.7 567 54.0
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 1.5e-144 517.3 579 51.6
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 2.5e-144 516.5 574 50.3
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 4.3e-144 515.8 574 53.1
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 5.6e-144 515.4 571 50.3
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 5.3e-142 508.8 572 52.8
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 1.5e-141 507.3 578 50.0
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 2.9e-140 503.1 579 51.1
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 3.8e-140 502.7 572 50.7
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 8.4e-140 501.5 576 52.4
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.4e-139 500.7 571 52.7
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.4e-139 500.7 572 51.2
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.5e-138 496.1 574 52.6
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 1.9e-136 490.3 578 49.5
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 1.3e-135 487.6 583 50.6
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 1.4e-134 484.2 536 49.8
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 1.5e-133 480.7 574 48.6
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 2.0e-133 480.3 572 47.6
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 2.6e-133 479.9 464 56.5
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 3.4e-133 479.6 569 48.5
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 3.4e-133 479.6 556 49.8
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 4.5e-133 479.2 577 52.9
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 6.5e-132 475.3 579 50.6
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 1.9e-131 473.8 571 46.8
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 3.2e-131 473.0 578 47.6
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 5.5e-131 472.2 459 58.4
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 9.3e-131 471.5 569 50.1
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 2.1e-130 470.3 553 49.5
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 2.7e-130 469.9 519 50.9
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 1.8e-129 467.2 553 49.4
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 3.3e-128 463.0 584 47.6
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 3.7e-127 459.5 579 48.9
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 4.8e-127 459.1 579 47.0
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 6.3e-127 458.8 569 47.6
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 2.4e-126 456.8 571 44.7
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.9e-126 455.3 574 47.2
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 4.5e-125 452.6 577 45.6
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 5.9e-125 452.2 592 45.9
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 1.0e-124 451.4 577 45.6
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 1.4e-123 447.6 537 47.5
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 1.2e-122 444.5 534 46.4
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 1.6e-122 444.1 577 44.9
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 2.1e-122 443.7 585 44.3
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 5.1e-121 439.1 568 45.6
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 6.7e-121 438.7 575 47.5
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 9.7e-120 434.9 603 47.4
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 6.3e-119 432.2 578 45.0
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 6.3e-119 432.2 572 44.8
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.1e-118 431.4 389 59.6
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 4.1e-118 429.5 576 44.3
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 9.1e-118 428.3 577 43.8
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 1.2e-117 427.9 577 44.0
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.9e-116 423.3 574 47.0
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 6.5e-116 422.2 574 47.0
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 7.2e-115 418.7 574 46.5
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 3.6e-114 416.4 577 44.0
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 4.7e-114 416.0 569 42.7
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 6.1e-114 415.6 588 45.4
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.4e-113 414.5 574 44.9
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 6.7e-113 412.1 502 48.4
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 8.2e-111 405.2 559 42.8
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 5.3e-110 402.5 462 51.7
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 1.5e-109 401.0 581 43.4
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 1.3e-108 397.9 580 43.3
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 2.5e-107 393.7 570 42.5
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 3.2e-107 393.3 574 43.0
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 3.9e-105 386.3 568 42.4
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 2.6e-104 383.6 458 50.2
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 7.0e-102 375.6 455 50.1
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.3e-100 371.3 363 57.0
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 5.5e-99 365.9 468 45.5
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 1.8e-97 360.9 376 53.7
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 5.2e-97 359.4 465 46.7
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 1.2e-96 358.2 568 40.7
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 7.5e-96 355.5 265 72.1
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 7.0e-94 349.0 468 45.1
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.5e-88 331.3 259 66.8
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 9.5e-75 285.4 563 36.8
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 1.1e-70 271.9 546 33.3
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 6.0e-69 266.2 250 58.8
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 4.7e-66 256.5 391 37.3
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.0e-64 251.1 448 36.4
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.7e-61 240.7 312 44.9
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 2.2e-47 194.5 360 34.7
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 8.4e-47 192.6 235 51.5
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 5.4e-46 189.9 248 42.3
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 7.3e-43 179.5 154 67.5
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.6e-42 178.3 154 67.5
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.1e-42 176.0 251 43.8
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 2.0e-40 171.4 403 30.5
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 1.3e-39 168.7 480 30.4
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 8.7e-36 156.0 161 46.6
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 1.9e-35 154.8 141 57.4
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 2.8e-34 151.0 157 55.4
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 3.8e-31 140.6 573 23.7
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.4e-30 138.7 164 48.2
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 2.4e-30 137.9 559 24.3
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.3e-28 132.1 530 27.7
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 1.3e-28 132.1 527 24.9
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.1e-27 129.0 145 46.9
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.3e-27 127.1 116 57.8
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 2.8e-26 124.4 556 23.7
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.8e-26 123.6 106 65.1
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.8e-25 121.7 172 41.9
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 2.5e-22 111.3 178 39.9
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.5e-22 111.3 101 61.4
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.1e-21 108.2 208 38.9
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.6e-21 107.1 145 39.3
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 7.9e-21 106.3 162 40.7
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 3.3e-19 100.9 109 50.5
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 4.3e-19 100.5 149 34.2
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 7.4e-19 99.8 79 64.6
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 9.6e-19 99.4 138 40.6
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 2.1e-18 98.2 134 40.3
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 6.2e-18 96.7 71 76.1
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 1.8e-17 95.1 533 22.5
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 1.8e-17 95.1 141 37.6
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 5.3e-17 93.6 123 42.3
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.4e-15 86.3 83 56.6
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 2.5e-14 84.7 73 58.9
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 3.2e-14 84.3 114 43.9
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 5.5e-14 83.6 111 41.4
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.6e-13 82.0 70 67.1
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 3.5e-13 80.9 263 25.1
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.9e-11 75.1 111 38.7
AagrBONN_evm.TU.Sc2ySwM_228.1577 Anthoceros agrestis HOM05D003578 ORTHO05D004021 4.3e-11 73.9 362 21.0
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 9.7e-11 72.8 84 39.3
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.3e-10 72.4 65 58.5
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.3e-10 72.4 65 58.5
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 2.2e-10 71.6 85 47.1
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.2e-08 65.9 55 58.2
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.4e-08 64.3 116 40.5
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.9e-07 61.2 68 51.5
Zm00001eb135950 Zea mays HOM05D003578 ORTHO05D004021 8.5e-07 59.7 65 43.1


User provided reference genes

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