Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 3826.2 1977 100.0
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 2944.1 1985 78.8
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2629.4 1996 71.1
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2579.7 1998 70.3
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2578.9 1985 69.7
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 2575.0 1985 69.7
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2571.2 1985 69.6
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 2568.1 2027 68.5
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 2557.3 2002 69.8
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 2553.1 2025 68.5
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 2545.8 2016 68.8
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 2515.7 1996 69.3
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 2501.9 2159 64.7
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 2481.4 2027 67.1
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 2469.1 2043 66.7
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 2418.3 1990 66.4
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 2410.6 2001 66.3
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 2410.2 2000 66.3
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 2391.3 1997 66.2
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2331.6 2004 63.9
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 2326.2 2019 63.3
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 2319.7 2014 63.8
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2310.4 2007 63.7
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 2298.1 2032 62.8
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2280.8 1994 63.5
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2279.6 2010 62.9
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2278.1 2004 63.0
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2268.4 2028 62.8
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2259.6 2003 62.8
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2248.0 2028 61.4
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 2243.4 1970 62.3
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 2241.5 2014 61.6
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 2238.4 1576 71.9
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2235.7 1990 62.1
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 2234.9 1994 62.1
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 2223.7 1653 69.4
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2223.0 1572 71.1
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 2221.0 1995 61.9
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2218.4 1982 61.3
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 2207.6 1985 62.4
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 2204.9 1994 62.2
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2197.2 2003 61.0
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 2182.5 1993 61.1
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 2178.7 2011 60.2
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 2176.7 2033 60.0
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2169.8 2003 60.5
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 2169.8 1995 61.6
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 2169.4 2030 58.9
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 2165.2 2023 59.9
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 2109.7 1956 60.5
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 2102.4 2078 58.4
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 2097.8 2156 57.1
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 2063.9 2017 57.9
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 2060.8 2015 57.9
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 2058.1 2017 57.8
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 2038.5 2008 57.6
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 2035.4 1698 66.3
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 2034.6 2014 57.3
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 2031.9 1912 58.6
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 2030.4 1896 58.8
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 2026.5 2148 55.3
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 2019.2 2011 57.1
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 2014.6 1989 57.2
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 2014.6 1977 57.3
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 2014.6 1977 58.0
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 2013.8 2048 56.4
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 2004.2 1989 57.4
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1999.2 1900 58.2
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1991.9 2035 56.7
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1987.6 2001 57.5
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1987.2 2019 56.0
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1979.9 1984 56.7
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1978.0 1501 67.6
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1975.7 1985 57.0
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1968.4 2080 55.4
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1963.0 2005 56.0
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1944.9 1997 55.0
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1943.7 2018 56.0
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1942.9 1364 72.1
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1910.2 2006 54.5
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1893.2 1899 55.5
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1861.7 2018 52.6
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1837.0 1919 53.9
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1835.5 2000 52.2
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1825.1 1969 52.7
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1822.8 2029 52.1
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1818.1 1972 52.9
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1804.3 1932 53.1
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1792.3 1993 52.3
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1784.2 1997 53.2
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1761.5 1977 53.7
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1761.5 1977 53.7
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1760.7 2011 52.4
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1756.5 1862 54.3
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1752.6 1268 70.4
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1719.9 1914 51.9
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1714.1 1972 50.9
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1659.0 1507 58.5
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1642.1 1200 72.8
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1629.8 1987 48.2
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1191.4 1120 62.1
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 0.0e+00 1139.8 1718 40.2
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1114.8 898 64.0
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 0.0e+00 1107.0 1000 59.5
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1085.9 1910 39.2
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 2.7e-310 1069.7 1113 58.3
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 3.0e-309 1066.2 1552 40.5
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 4.0e-306 1055.8 1702 38.5
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 4.4e-305 1052.4 2001 37.6
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 3.2e-303 1046.2 2016 36.5
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 3.2e-295 1019.6 1162 53.2
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 3.5e-294 1016.1 998 59.8
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.2e-259 900.6 1217 46.2
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 2.9e-256 890.2 1094 50.6
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.1e-226 792.0 1391 37.5
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 3.3e-223 780.4 1795 31.4
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.1e-207 728.8 607 63.1
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 4.0e-205 720.3 542 68.6
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 4.9e-203 713.4 1194 39.4
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 2.7e-193 681.0 500 69.2
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 3.2e-162 577.8 852 44.1
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.1e-149 534.6 663 46.5
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 5.5e-146 523.9 596 48.5
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.5e-143 515.8 759 48.4
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 5.0e-139 500.7 552 50.9
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.8e-131 474.6 588 42.7
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 7.0e-101 374.0 277 69.7
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 6.6e-83 314.3 469 41.4
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 3.8e-78 298.5 383 46.7
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 1.3e-70 273.5 393 44.3
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 2.2e-62 246.1 254 50.4
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 1.2e-60 240.4 742 34.9
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 2.9e-54 219.2 535 33.5
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 3.0e-51 209.1 571 35.4
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 1.1e-50 207.2 347 40.1
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 1.8e-43 183.3 192 50.5
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 9.1e-40 171.0 139 61.2
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.9e-38 166.0 251 34.7
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 4.2e-37 162.2 164 50.6
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 8.8e-35 154.5 372 33.3
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 2.6e-34 152.9 163 49.1
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 4.8e-33 148.7 167 47.9
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 8.2e-33 147.9 112 68.8
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 1.4e-32 147.1 1229 21.6
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 1.0e-30 141.0 121 61.2
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 1.6e-28 133.7 224 37.5
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 3.6e-28 132.5 80 77.5
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 3.6e-28 132.5 85 75.3
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.4e-27 130.6 94 71.3
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 7.4e-26 124.8 125 52.8
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 8.2e-25 121.3 410 25.9
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 7.0e-24 118.2 140 51.4
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 4.8e-17 95.5 56 80.4
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 9.1e-16 91.3 155 40.6
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 3.5e-15 89.4 104 51.0
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 1.3e-14 87.4 139 40.3
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 1.2e-12 80.9 141 37.6
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 3.6e-12 79.3 73 57.5
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 5.7e-10 72.0 70 54.3
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 2.8e-09 69.7 57 59.6
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 2.8e-09 69.7 99 42.4
Cpa.g.sc193.11 Carica papaya HOM05D004392 ORTHO05D004846 1.4e-08 67.4 65 50.8
FAN07G2918 Fragaria x ananassa HOM05D004392 ORTHO05D004846 4.1e-08 65.9 119 44.5
Phvul.002G075100 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 4.1e-08 65.9 149 45.6
Psat1g112240 Pisum sativum HOM05D004392 ORTHO05D029174 1.3e-06 60.8 62 53.2
Sc25g0003360 Simmondsia chinensis HOM05D004392 ORTHO05D004846 1.7e-06 60.5 81 50.6
FAN06G3220 Fragaria x ananassa HOM05D011336 ORTHO05D017014 3.8e-06 59.3 200 36.5
Psat3g007520 Pisum sativum HOM05D000467 ORTHO05D000379 8.6e-06 58.2 68 47.1


User provided reference genes

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