Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 3.0e-84 315.1 154 100.0
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 3.0e-68 261.9 154 84.4
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 4.0e-68 261.5 154 84.4
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 6.8e-68 260.8 153 84.3
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 6.8e-68 260.8 153 84.3
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 8.8e-68 260.4 154 83.1
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 3.4e-67 258.5 153 83.7
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 1.2e-64 250.0 157 81.5
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 5.0e-63 244.6 155 80.0
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 8.6e-63 243.8 157 79.6
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 5.5e-62 241.1 155 78.7
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.2e-61 240.0 154 79.9
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 2.1e-61 239.2 154 76.6
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 2.1e-61 239.2 157 79.6
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 3.0e-60 235.3 154 78.6
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 5.2e-60 234.6 155 75.5
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 5.2e-60 234.6 154 77.9
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 6.8e-60 234.2 155 74.8
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 6.8e-60 234.2 127 88.2
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 3.4e-59 231.9 153 77.1
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 7.5e-59 230.7 158 77.2
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 9.8e-59 230.3 127 85.8
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 4.9e-58 228.0 153 76.5
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 8.3e-58 227.3 152 75.7
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 1.1e-57 226.9 128 87.5
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 1.4e-57 226.5 160 74.4
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 1.8e-57 226.1 155 74.8
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 2.4e-57 225.7 128 86.7
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 4.1e-57 224.9 160 72.5
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 5.4e-57 224.6 128 86.7
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 5.4e-57 224.6 158 74.7
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 7.0e-57 224.2 146 77.4
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 9.2e-57 223.8 160 73.1
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 1.2e-56 223.4 147 78.9
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.2e-56 223.4 154 74.0
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 2.0e-56 222.6 154 75.3
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 3.5e-56 221.9 154 74.0
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 3.5e-56 221.9 154 74.0
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 5.9e-56 221.1 149 75.2
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 5.9e-56 221.1 149 73.8
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.0e-55 220.3 154 74.7
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 1.3e-55 219.9 122 86.9
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 2.9e-55 218.8 147 75.5
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 2.9e-55 218.8 128 83.6
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 3.9e-55 218.4 154 72.1
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 5.0e-55 218.0 131 77.9
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 5.0e-55 218.0 156 73.7
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 6.6e-55 217.6 128 82.8
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 8.6e-55 217.2 154 72.1
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 8.6e-55 217.2 158 72.8
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 8.6e-55 217.2 125 81.6
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 1.1e-54 216.9 159 72.3
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 1.5e-54 216.5 159 72.3
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.9e-54 216.1 154 73.4
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 2.5e-54 215.7 154 70.1
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 5.6e-54 214.5 139 74.8
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 5.6e-54 214.5 137 78.1
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 2.8e-53 212.2 152 73.0
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 2.8e-53 212.2 126 81.0
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.6e-53 211.8 154 70.1
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 6.1e-53 211.1 154 70.1
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 6.1e-53 211.1 155 71.6
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 8.0e-53 210.7 139 71.9
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.0e-52 210.3 158 69.0
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 1.0e-52 210.3 157 70.1
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 1.4e-52 209.9 126 81.7
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.8e-52 209.5 154 69.5
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 1.8e-52 209.5 157 70.7
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 2.3e-52 209.1 140 72.9
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 2.3e-52 209.1 140 72.9
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.3e-52 209.1 160 66.9
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 3.1e-52 208.8 139 72.7
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 4.0e-52 208.4 160 65.6
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 5.2e-52 208.0 143 72.7
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 6.8e-52 207.6 139 71.9
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 8.9e-52 207.2 125 77.6
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 8.9e-52 207.2 147 70.7
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 2.0e-51 206.1 139 71.2
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 2.0e-51 206.1 126 80.2
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 2.0e-51 206.1 168 67.9
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 2.6e-51 205.7 161 68.3
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 2.6e-51 205.7 145 72.4
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.6e-51 205.7 152 71.7
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.4e-51 204.9 144 74.3
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 7.5e-51 204.1 164 67.7
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.5e-51 204.1 164 65.2
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 1.7e-50 203.0 155 68.4
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 1.7e-50 203.0 139 71.2
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 1.7e-50 203.0 125 76.0
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.7e-50 203.0 119 81.5
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 1.7e-50 203.0 146 73.3
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 1.7e-50 203.0 146 73.3
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 2.2e-50 202.6 145 71.0
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.2e-50 202.6 160 66.2
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 2.9e-50 202.2 143 73.4
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 2.9e-50 202.2 125 80.0
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 2.9e-50 202.2 146 73.3
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.4e-49 199.9 142 73.2
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 5.4e-49 198.0 155 67.1
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 7.0e-49 197.6 118 82.2
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 7.0e-49 197.6 166 63.9
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.2e-48 196.8 152 65.8
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.2e-48 196.8 155 66.5
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.2e-48 196.8 155 66.5
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 2.0e-48 196.1 116 83.6
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 7.8e-48 194.1 140 69.3
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.3e-47 193.4 119 75.6
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.3e-47 193.4 141 70.2
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 1.3e-47 193.4 134 73.1
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 3.9e-47 191.8 117 79.5
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.5e-46 189.9 154 65.6
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 1.9e-46 189.5 154 64.9
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 2.5e-46 189.1 148 66.2
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 2.5e-46 189.1 116 78.4
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 3.3e-46 188.7 120 74.2
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 9.5e-46 187.2 115 80.0
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 9.5e-46 187.2 128 71.9
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.6e-45 186.4 188 57.4
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 3.6e-45 185.3 116 77.6
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 1.2e-43 180.3 142 66.9
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 2.0e-43 179.5 126 71.4
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.0e-43 179.5 153 64.7
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 2.0e-43 179.5 215 53.0
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 3.4e-43 178.7 147 62.6
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 7.5e-43 177.6 106 81.1
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 9.8e-43 177.2 105 81.9
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.7e-42 176.4 124 72.6
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 2.9e-42 175.6 143 64.3
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.7e-42 175.3 147 68.0
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 5.4e-41 171.4 125 68.8
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 1.2e-40 170.2 118 66.9
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.1e-40 169.5 200 49.5
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 4.6e-40 168.3 123 71.5
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 6.0e-40 167.9 102 76.5
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.0e-40 167.9 154 59.7
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.0e-39 167.2 154 59.7
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.0e-39 167.2 154 59.7
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 3.0e-39 165.6 155 56.1
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 6.6e-39 164.5 110 73.6
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 6.6e-39 164.5 105 79.0
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 8.1e-37 157.5 142 60.6
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 2.3e-36 156.0 95 75.8
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 6.8e-36 154.5 101 72.3
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 6.8e-36 154.5 138 62.3
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 8.9e-36 154.1 150 59.3
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 1.6e-32 143.3 119 59.7
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 5.1e-31 138.3 107 67.3
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.1e-29 132.9 76 86.8
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 1.4e-28 130.2 133 52.6
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 7.8e-24 114.4 82 73.2
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 6.6e-23 111.3 64 81.2
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 8.7e-23 110.9 58 87.9
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 2.1e-21 106.3 60 80.0
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 2.8e-21 105.9 120 46.7
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 4.8e-21 105.1 74 74.3
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 2.4e-20 102.8 128 51.6
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 3.1e-20 102.4 75 65.3
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 2.6e-19 99.4 75 64.0
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 5.8e-19 98.2 58 81.0
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 7.6e-19 97.8 75 62.7
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 1.5e-14 83.6 47 80.9
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 3.1e-12 75.9 145 37.9
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 4.5e-11 72.0 132 34.8
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 1.9e-09 66.6 151 31.1
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 1.2e-08 63.9 39 71.8
Sabra14G0052800 Salix brachista HOM05D000186 ORTHO05D001124 3.3e-06 55.8 160 33.8


User provided reference genes

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