Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.3323 Acer truncatum HOM05D000212 ORTHO05D005509 6.4e-54 213.8 104 100.0
Potri.004G175800 Populus trichocarpa HOM05D000212 ORTHO05D005509 2.3e-51 205.3 102 96.1
BcaB03g15139 Brassica carinata HOM05D000212 ORTHO05D005509 3.9e-51 204.5 102 96.1
BcaB03g15394 Brassica carinata HOM05D000212 ORTHO05D005509 3.9e-51 204.5 102 96.1
BcaC08g46227 Brassica carinata HOM05D000212 ORTHO05D005509 3.9e-51 204.5 102 96.1
BcaNung05109 Brassica carinata HOM05D000212 ORTHO05D005509 3.9e-51 204.5 102 96.1
A07p34520 Brassica napus HOM05D000212 ORTHO05D005509 3.9e-51 204.5 102 96.1
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 3.9e-51 204.5 102 96.1
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 3.9e-51 204.5 102 96.1
PGR142G1333 Punica granatum HOM05D000212 ORTHO05D005509 3.9e-51 204.5 102 95.1
Cpa.g.sc20.87 Carica papaya HOM05D000212 ORTHO05D005509 5.1e-51 204.1 102 95.1
AUR62013028 Chenopodium quinoa HOM05D000212 ORTHO05D005509 8.7e-51 203.4 102 95.1
Thhalv10018534m.g Eutrema salsugineum HOM05D000212 ORTHO05D005509 8.7e-51 203.4 102 95.1
Sp5g23030 Schrenkiella parvula HOM05D000212 ORTHO05D005509 8.7e-51 203.4 102 95.1
AL2G26910 Arabidopsis lyrata HOM05D000212 ORTHO05D005509 1.1e-50 203.0 102 95.1
AT1G68010 Arabidopsis thaliana HOM05D000212 ORTHO05D005509 1.1e-50 203.0 102 95.1
Carub.0002s1449 Capsella rubella HOM05D000212 ORTHO05D005509 1.1e-50 203.0 102 95.1
Eucgr.I01423 Eucalyptus grandis HOM05D000212 ORTHO05D005509 1.5e-50 202.6 102 93.1
Gohir.A01G169100 Gossypium hirsutum HOM05D000212 ORTHO05D005509 1.5e-50 202.6 102 95.1
Gohir.D01G160100 Gossypium hirsutum HOM05D000212 ORTHO05D005509 1.5e-50 202.6 102 95.1
Gorai.002G198600 Gossypium raimondii HOM05D000212 ORTHO05D005509 1.5e-50 202.6 102 95.1
Lalb_Chr02g0143391 Lupinus albus HOM05D000212 ORTHO05D005509 1.5e-50 202.6 102 95.1
Sc08g0002900 Simmondsia chinensis HOM05D000212 ORTHO05D005509 1.5e-50 202.6 102 94.1
AUR62043666 Chenopodium quinoa HOM05D000212 ORTHO05D005509 1.9e-50 202.2 102 94.1
Dinv41936 Davidia involucrata HOM05D000212 ORTHO05D005509 1.9e-50 202.2 102 94.1
Ciclev10028639m.g Citrus clementina HOM05D000212 ORTHO05D005509 3.3e-50 201.4 102 94.1
Lalb_Chr21g0306931 Lupinus albus HOM05D000212 ORTHO05D005509 3.3e-50 201.4 102 94.1
Manes.04G076300 Manihot esculenta HOM05D000212 ORTHO05D005509 3.3e-50 201.4 102 94.1
PSO675G7560 Papaver somniferum HOM05D000212 ORTHO05D005509 3.3e-50 201.4 102 93.1
CANSAT25G2634 Cannabis sativa HOM05D000212 ORTHO05D005509 4.3e-50 201.1 102 94.1
DCAR_022947 Daucus carota HOM05D000212 ORTHO05D005509 4.3e-50 201.1 102 92.2
GSVIVG01024012001 Vitis vinifera HOM05D000212 ORTHO05D005509 4.3e-50 201.1 102 93.1
Medtr1g112510 Medicago truncatula HOM05D000212 ORTHO05D005509 5.6e-50 200.7 102 94.1
Aqoxy6G02140 Aquilegia oxysepala HOM05D000212 ORTHO05D005509 7.3e-50 200.3 102 92.2
ECA246G1556 Erigeron canadensis HOM05D000212 ORTHO05D005509 7.3e-50 200.3 102 92.2
Sed0017644 Sechium edule HOM05D000212 ORTHO05D005509 7.3e-50 200.3 102 95.1
TAR381G1304 Trochodendron aralioides HOM05D000212 ORTHO05D005509 7.3e-50 200.3 102 92.2
Hma1.2p1_0163F.1_g072510 Hydrangea macrophylla HOM05D000212 ORTHO05D005509 9.6e-50 199.9 102 93.1
Lalb_Chr06g0163651 Lupinus albus HOM05D000212 ORTHO05D005509 9.6e-50 199.9 102 93.1
MD05G1122100 Malus domestica HOM05D000212 ORTHO05D005509 9.6e-50 199.9 102 93.1
Os02g0101500 Oryza sativa ssp. japonica HOM05D000212 ORTHO05D005509 9.6e-50 199.9 102 91.2
PSO541G1525 Papaver somniferum HOM05D000212 ORTHO05D005509 9.6e-50 199.9 102 92.2
Thecc.02G059100 Theobroma cacao HOM05D000212 ORTHO05D005509 9.6e-50 199.9 102 93.1
VMungo0720G0733 Vigna mungo HOM05D000212 ORTHO05D005509 9.6e-50 199.9 102 94.1
MSTRG.5454 Avicennia marina HOM05D000212 ORTHO05D005509 1.3e-49 199.5 102 92.2
Ca_11207_v3 Cicer arietinum L. HOM05D000212 ORTHO05D005509 1.3e-49 199.5 102 93.1
CsaV3_7G001060 Cucumis sativus L. HOM05D000212 ORTHO05D005509 1.6e-49 199.1 102 94.1
Duzib132G0804 Durio zibethinus HOM05D000212 ORTHO05D005509 1.6e-49 199.1 102 93.1
Prupe.7G264000 Prunus persica HOM05D000212 ORTHO05D005509 1.6e-49 199.1 102 93.1
THA.LOC104824763 Tarenaya hassleriana HOM05D000212 ORTHO05D005509 1.6e-49 199.1 102 93.1
CSS0004363 Camellia sinensis var. sinensis HOM05D000212 ORTHO05D005509 2.1e-49 198.7 102 93.1
Phvul.007G019300 Phaseolus vulgaris HOM05D000212 ORTHO05D005509 2.1e-49 198.7 102 93.1
TWI79G0672 Tripterygium wilfordii HOM05D000212 ORTHO05D005509 2.1e-49 198.7 102 93.1
Lj5g0017900 Lotus japonicus HOM05D000212 ORTHO05D005509 2.8e-49 198.4 102 93.1
Psat6g231880 Pisum sativum HOM05D000212 ORTHO05D005509 2.8e-49 198.4 102 92.2
Solyc01g111630.3 Solanum lycopersicum HOM05D000212 ORTHO05D005509 2.8e-49 198.4 102 92.2
Sopen01g053670 Solanum pennellii HOM05D000212 ORTHO05D005509 2.8e-49 198.4 102 92.2
PGSC0003DMG400006186 Solanum tuberosum HOM05D000212 ORTHO05D005509 2.8e-49 198.4 102 92.2
TPR.G36351 Trifolium pratense HOM05D000212 ORTHO05D005509 2.8e-49 198.4 102 92.2
unitig_899.g15611 Utricularia gibba HOM05D000212 ORTHO05D005509 3.6e-49 198.0 102 91.2
HanXRQChr17g0544201 Helianthus annuus HOM05D000212 ORTHO05D005509 4.8e-49 197.6 102 91.2
Prupe.8G166000 Prunus persica HOM05D000212 ORTHO05D005509 4.8e-49 197.6 102 92.2
Hund00191 Selenicereus undatus HOM05D000212 ORTHO05D005509 4.8e-49 197.6 102 90.2
EL10Ac9g21375 Beta vulgaris HOM05D000212 ORTHO05D005509 6.2e-49 197.2 102 91.2
Nn5g30798 Nelumbo nucifera HOM05D000212 ORTHO05D005509 6.2e-49 197.2 102 91.2
Cfa005249 Carpinus fangiana HOM05D000212 ORTHO05D005509 8.1e-49 196.8 102 89.2
RcHm_v2.0_Chr7g0224761 Rosa chinensis HOM05D000212 ORTHO05D005509 8.1e-49 196.8 102 91.2
Actinidia21457 Actinidia chinensis HOM05D000212 ORTHO05D005509 1.1e-48 196.4 102 90.2
FvH4_5g30340 Fragaria vesca HOM05D000212 ORTHO05D005509 1.1e-48 196.4 102 91.2
FAN18G0770 Fragaria x ananassa HOM05D000212 ORTHO05D005509 1.1e-48 196.4 102 91.2
Lsat_1_v5_gn_3_46860 Lactuca sativa HOM05D000212 ORTHO05D005509 1.1e-48 196.4 102 90.2
Glyma.10G281400 Glycine max HOM05D000212 ORTHO05D005509 1.4e-48 196.1 102 91.2
Oeu005702.1 Olea europaea HOM05D000212 ORTHO05D005509 1.8e-48 195.7 109 88.1
Zm00001eb229250 Zea mays HOM05D000212 ORTHO05D005509 1.8e-48 195.7 102 88.2
SalBow7G0649 Salvia bowleyana HOM05D000212 ORTHO05D005509 2.4e-48 195.3 113 85.8
SalBow7G2155 Salvia bowleyana HOM05D000212 ORTHO05D005509 2.4e-48 195.3 113 85.8
CDE04G1730 Ceratophyllum demersum HOM05D000212 ORTHO05D005509 3.1e-48 194.9 102 90.2
Dinv14109 Davidia involucrata HOM05D000212 ORTHO05D005509 4.0e-48 194.5 109 87.2
CiPaw.05G082600 Carya illinoinensis HOM05D000212 ORTHO05D005509 5.3e-48 194.1 102 90.2
THA.LOC104807808 Tarenaya hassleriana HOM05D000212 ORTHO05D005509 5.3e-48 194.1 104 91.3
CDE02G3685 Ceratophyllum demersum HOM05D000212 ORTHO05D005509 6.9e-48 193.7 102 89.2
Glyma.20G107800 Glycine max HOM05D000212 ORTHO05D005509 6.9e-48 193.7 102 89.2
Cc09_g10170 Coffea canephora HOM05D000212 ORTHO05D005509 2.0e-47 192.2 111 84.7
HPP92_022190 Vanilla planifolia HOM05D000212 ORTHO05D005509 7.6e-47 190.3 102 86.3
COL.COLO4_17344 Corchorus olitorius HOM05D000212 ORTHO05D005509 1.3e-46 189.5 95 95.8
ATR0180G008 Amborella trichopoda HOM05D000212 ORTHO05D005509 2.4e-45 185.3 102 85.3
Peaxi162Scf00362g00646 Petunia axillaris HOM05D000212 ORTHO05D005509 5.4e-45 184.1 118 77.1
Aa31LG11G2730 Aethionema arabicum HOM05D000212 ORTHO05D005509 9.3e-45 183.3 102 88.2
Haze_02134 Corylus avellana HOM05D000212 ORTHO05D005509 2.1e-44 182.2 103 85.4
CBR_g49204 Chara braunii HOM05D000212 ORTHO05D005509 3.5e-44 181.4 102 81.4
SalBow1G2308 Salvia bowleyana HOM05D000212 ORTHO05D005509 3.5e-44 181.4 102 87.3
SMO145G0129 Selaginella moellendorffii HOM05D000212 ORTHO05D005509 3.5e-44 181.4 102 81.4
Mapoly0015s0044 Marchantia polymorpha HOM05D000212 ORTHO05D005509 6.0e-44 180.6 102 83.3
Pp3c19_20080 Physcomitrium patens HOM05D000212 ORTHO05D005509 6.0e-44 180.6 102 83.3
FAN13G2675 Fragaria x ananassa HOM05D000212 ORTHO05D005509 2.3e-43 178.7 102 86.3
AagrBONN_evm.TU.Sc2ySwM_117.3207 Anthoceros agrestis HOM05D000212 ORTHO05D005509 6.6e-43 177.2 102 79.4
Lj5C178T12 Lonicera japonica HOM05D000212 ORTHO05D005509 6.6e-43 177.2 102 85.3
CAN.G588.84 Capsicum annuum HOM05D000212 ORTHO05D005509 1.5e-42 176.0 102 84.3
SEGI_20354 Sequoiadendron giganteum HOM05D000212 ORTHO05D000001 1.5e-42 176.0 95 85.3
vmacro17343 Vaccinium macrocarpon HOM05D000212 ORTHO05D005509 1.9e-42 175.6 102 85.3
Pp3c18_12500 Physcomitrium patens HOM05D000212 ORTHO05D005509 5.6e-42 174.1 102 77.5
Nitab4.5_0000283g0400 Nicotiana tabacum HOM05D000212 ORTHO05D005509 1.3e-41 172.9 102 81.4
Nitab4.5_0003914g0050 Nicotiana tabacum HOM05D000212 ORTHO05D005509 1.3e-41 172.9 102 81.4
MELO3C013350.2 Cucumis melo HOM05D000212 ORTHO05D005509 3.6e-41 171.4 114 78.9
CiPaw.06G121600 Carya illinoinensis HOM05D000212 ORTHO05D005509 9.0e-40 166.8 102 79.4
Ah.01g008420 Amaranthus hybridus HOM05D000212 ORTHO05D005509 1.3e-38 162.9 79 97.5
CAN.G937.5 Capsicum annuum HOM05D000212 ORTHO05D005509 1.1e-37 159.8 100 79.0
Sabra04G0117700 Salix brachista HOM05D000212 ORTHO05D005509 1.0e-35 153.3 104 76.0
BcaC08g46003 Brassica carinata HOM05D000212 ORTHO05D005509 6.7e-35 150.6 102 75.5
Ah.01g023040 Amaranthus hybridus HOM05D000212 ORTHO05D005509 2.8e-33 145.2 79 89.9
ClCG02G004060 Citrullus lanatus HOM05D000212 ORTHO05D005509 1.1e-32 143.3 102 72.5
CAN.G1040.7 Capsicum annuum HOM05D000212 ORTHO05D005509 1.4e-32 142.9 107 68.2
Cre06.g295450 Chlamydomonas reinhardtii HOM05D000212 ORTHO05D005509 4.0e-32 141.4 102 62.7
arahy.Tifrunner.gnm1.ann1.KVXN1E Arachis hypogaea HOM05D000212 ORTHO05D005509 1.3e-30 136.3 90 77.8
Rhsim05G0056500 Rhododendron simsii HOM05D000212 ORTHO05D005509 2.9e-30 135.2 102 69.6
PRCOL_00005045 Prasinoderma coloniale HOM05D000212 ORTHO05D005509 1.1e-29 133.3 99 59.6
SGA_v2.0_scaffold207G41924 Striga asiatica HOM05D000212 ORTHO05D005509 3.2e-29 131.7 95 70.5
CARHR060650 Cardamine hirsuta HOM05D000212 ORTHO05D005509 5.5e-29 131.0 64 96.9
Lsat_1_v5_gn_6_32081 Lactuca sativa HOM05D000098 ORTHO05D001228 4.6e-28 127.9 84 75.0
CAN.G798.47 Capsicum annuum HOM05D000212 ORTHO05D005509 4.3e-26 121.3 102 62.7
Hma1.2p1_0163F.1_g072520 Hydrangea macrophylla HOM05D000212 ORTHO05D005509 1.3e-22 109.8 57 89.5
TPR.G2480 Trifolium pratense HOM05D000001 ORTHO05D000003 2.2e-17 92.4 44 97.7
Lsat_1_v5_gn_2_53700 Lactuca sativa HOM05D000212 ORTHO05D005509 2.9e-14 82.0 52 73.1
arahy.Tifrunner.gnm1.ann1.71EHKP Arachis hypogaea HOM05D000212 ORTHO05D005509 1.1e-13 80.1 102 44.1
FAN08G0938 Fragaria x ananassa HOM05D000212 ORTHO05D005509 2.5e-13 79.0 102 46.1
Hund07169 Selenicereus undatus HOM05D000212 ORTHO05D005509 9.4e-13 77.0 40 87.5
CARHR060660 Cardamine hirsuta HOM05D000212 ORTHO05D005509 1.6e-12 76.3 38 92.1
Actinidia28254 Actinidia chinensis HOM05D000212 ORTHO05D030821 1.0e-11 73.6 96 44.8
Actinidia33559 Actinidia chinensis HOM05D000212 ORTHO05D030821 1.0e-11 73.6 96 44.8
MBI01_g14098_MAGBIO Magnolia biondii HOM05D047079 ORTHO05D048577 1.0e-11 73.6 91 42.9
Actinidia26082 Actinidia chinensis HOM05D000212 ORTHO05D005509 8.8e-11 70.5 34 91.2
Hund28420 Selenicereus undatus HOM05D000212 ORTHO05D005509 3.3e-10 68.6 41 73.2
Hund28422 Selenicereus undatus HOM05D000212 ORTHO05D005509 3.3e-10 68.6 41 73.2
MBI08_g29141_MAGBIO Magnolia biondii HOM05D000212 ORTHO05D005509 4.3e-10 68.2 38 76.3
DCAR_003174 Daucus carota HOM05D000212 ORTHO05D005509 1.7e-09 66.2 49 71.4
CAN.G46.39 Capsicum annuum HOM05D000212 ORTHO05D005509 2.6e-07 58.9 42 64.3
MBI08_g39930_MAGBIO Magnolia biondii HOM05D000212 ORTHO05D005509 1.0e-06 57.0 35 71.4
Haze_23674 Corylus avellana HOM05D000212 ORTHO05D030821 1.7e-06 56.2 31 77.4
CiPaw.15G014900 Carya illinoinensis HOM05D000212 ORTHO05D127487 5.0e-06 54.7 39 66.7


User provided reference genes

Program Settings