Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.3277 Acer truncatum HOM05D006341 ORTHO05D000377 1.8e-284 981.9 475 100.0
Atru.chr5.3271 Acer truncatum HOM05D006341 ORTHO05D000377 2.2e-266 921.8 486 92.4
Ciclev10028267m.g Citrus clementina HOM05D006341 ORTHO05D000377 1.2e-208 729.9 493 74.2
Duzib132G0346 Durio zibethinus HOM05D006341 ORTHO05D000377 3.7e-197 691.8 491 71.1
COL.COLO4_17298 Corchorus olitorius HOM05D006341 ORTHO05D000377 5.5e-193 677.9 492 68.5
Dinv04950 Davidia involucrata HOM05D006341 ORTHO05D000377 5.5e-193 677.9 494 68.0
TWI53G1223 Tripterygium wilfordii HOM05D006341 ORTHO05D000377 7.2e-193 677.6 497 68.6
Thecc.02G064100 Theobroma cacao HOM05D006341 ORTHO05D000377 2.1e-192 676.0 492 68.9
CSS0004411 Camellia sinensis var. sinensis HOM05D006341 ORTHO05D000377 4.6e-192 674.9 495 67.7
QL11p049167 Quercus lobata HOM05D006341 ORTHO05D000377 4.6e-192 674.9 484 69.0
Potri.004G172100 Populus trichocarpa HOM05D006341 ORTHO05D000377 2.5e-190 669.1 496 69.0
Sabra04G0114400 Salix brachista HOM05D006341 ORTHO05D000377 5.7e-190 667.9 495 68.7
Haze_02181 Corylus avellana HOM05D006341 ORTHO05D000377 7.4e-190 667.5 474 69.6
Haze_02174 Corylus avellana HOM05D006341 ORTHO05D000377 1.6e-189 666.4 474 69.4
TAR381G0106 Trochodendron aralioides HOM05D006341 ORTHO05D000377 6.3e-189 664.5 497 66.0
Manes.11G082657 Manihot esculenta HOM05D006341 ORTHO05D000377 3.1e-188 662.1 491 67.4
CANSAT25G3024 Cannabis sativa HOM05D006341 ORTHO05D000377 5.3e-188 661.4 492 66.5
Prupe.8G162700 Prunus persica HOM05D006341 ORTHO05D000377 5.3e-188 661.4 491 67.8
Gohir.A12G038400 Gossypium hirsutum HOM05D006341 ORTHO05D000377 6.9e-188 661.0 486 66.7
Gohir.D12G033900 Gossypium hirsutum HOM05D006341 ORTHO05D000377 2.2e-186 656.0 486 66.7
Gorai.008G034900 Gossypium raimondii HOM05D006341 ORTHO05D000377 1.9e-185 652.9 486 66.5
Nn7g37263 Nelumbo nucifera HOM05D006341 ORTHO05D000377 1.2e-184 650.2 496 64.7
MD05G1118100 Malus domestica HOM05D006341 ORTHO05D000377 1.0e-183 647.1 492 66.3
Hma1.2p1_0032F.1_g019570 Hydrangea macrophylla HOM05D006341 ORTHO05D000377 5.1e-183 644.8 497 64.6
vmacro02264 Vaccinium macrocarpon HOM05D006341 ORTHO05D000377 6.7e-183 644.4 532 63.2
COL.COLO4_17179 Corchorus olitorius HOM05D006341 ORTHO05D000377 2.0e-182 642.9 467 68.3
RcHm_v2.0_Chr6g0244441 Rosa chinensis HOM05D006341 ORTHO05D000377 6.9e-180 634.4 483 64.8
FvH4_2g01620 Fragaria vesca HOM05D006341 ORTHO05D000377 1.2e-179 633.6 492 65.0
RcHm_v2.0_Chr6g0244411 Rosa chinensis HOM05D006341 ORTHO05D000377 2.0e-179 632.9 484 64.9
Actinidia00608 Actinidia chinensis HOM05D006341 ORTHO05D000377 2.9e-178 629.0 472 66.5
Oeu006673.1 Olea europaea HOM05D006341 ORTHO05D000377 1.9e-177 626.3 493 65.1
PGR042G0052 Punica granatum HOM05D006341 ORTHO05D000377 3.3e-174 615.5 484 64.0
Aqoxy5G01641 Aquilegia oxysepala HOM05D006341 ORTHO05D000377 1.6e-171 606.7 486 62.1
Solyc01g098460.4 Solanum lycopersicum HOM05D006341 ORTHO05D000377 2.5e-169 599.4 495 61.2
Hund06416 Selenicereus undatus HOM05D006341 ORTHO05D000377 3.2e-169 599.0 520 59.8
Cc06_g16120 Coffea canephora HOM05D006341 ORTHO05D000377 1.2e-168 597.0 496 62.1
Sopen01g042030 Solanum pennellii HOM05D006341 ORTHO05D000377 1.6e-168 596.7 495 61.0
TPR.G31245 Trifolium pratense HOM05D006341 ORTHO05D000377 1.6e-168 596.7 490 61.0
Eucgr.G01768 Eucalyptus grandis HOM05D006341 ORTHO05D000377 6.1e-168 594.7 496 62.3
CsaV3_7G000880 Cucumis sativus L. HOM05D006341 ORTHO05D000377 1.0e-167 594.0 495 61.4
CAN.G134.236 Capsicum annuum HOM05D006341 ORTHO05D000377 1.4e-167 593.6 493 61.3
Lj4g0012983 Lotus japonicus HOM05D006341 ORTHO05D000377 2.3e-167 592.8 488 62.3
EL10Ac9g21414 Beta vulgaris HOM05D006341 ORTHO05D000377 3.0e-167 592.4 514 60.5
Peaxi162Scf00434g00625 Petunia axillaris HOM05D006341 ORTHO05D000377 1.3e-165 587.0 495 60.4
Psat7g085760 Pisum sativum HOM05D006341 ORTHO05D000377 4.8e-165 585.1 493 59.0
Rhsim11G0190600 Rhododendron simsii HOM05D006341 ORTHO05D000377 2.4e-164 582.8 501 60.3
AUR62010072 Chenopodium quinoa HOM05D006341 ORTHO05D000377 1.2e-163 580.5 510 59.6
FAN20G2467 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.2e-163 580.5 452 65.0
Lsat_1_v5_gn_8_124961 Lactuca sativa HOM05D006341 ORTHO05D000377 1.2e-163 580.5 477 60.0
THA.LOC104807791 Tarenaya hassleriana HOM05D006341 ORTHO05D000377 1.2e-163 580.5 495 58.8
Migut.B00102 Erythranthe guttata HOM05D006341 ORTHO05D000377 2.7e-163 579.3 486 59.7
Sp4g00210 Schrenkiella parvula HOM05D006341 ORTHO05D000377 2.2e-162 576.2 500 59.0
FAN24G0408 Fragaria x ananassa HOM05D006341 ORTHO05D000377 5.0e-162 575.1 448 65.0
AL4G10160 Arabidopsis lyrata HOM05D006341 ORTHO05D000377 1.9e-161 573.2 489 59.7
Carub.0003s3491 Capsella rubella HOM05D006341 ORTHO05D000377 1.9e-161 573.2 490 59.4
Thhalv10000146m.g Eutrema salsugineum HOM05D006341 ORTHO05D000377 1.9e-161 573.2 497 59.2
Nitab4.5_0001423g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 1.9e-161 573.2 485 59.4
GSVIVG01024058001 Vitis vinifera HOM05D006341 ORTHO05D000377 1.6e-160 570.1 477 60.8
MSTRG.16892 Avicennia marina HOM05D006341 ORTHO05D000377 3.6e-160 568.9 510 57.6
AT2G21070 Arabidopsis thaliana HOM05D006341 ORTHO05D000377 8.0e-160 567.8 482 59.8
Sc08g0003080 Simmondsia chinensis HOM05D006341 ORTHO05D000377 8.0e-160 567.8 525 57.1
BcaB06g27766 Brassica carinata HOM05D006341 ORTHO05D000377 2.3e-159 566.2 477 59.7
MBI02_g27965_MAGBIO Magnolia biondii HOM05D006341 ORTHO05D000377 2.3e-159 566.2 493 61.1
Lj5A183G92 Lonicera japonica HOM05D006341 ORTHO05D000377 3.0e-159 565.8 461 62.5
HanXRQChr17g0553851 Helianthus annuus HOM05D006341 ORTHO05D000377 4.0e-159 565.5 474 59.1
SGA_v2.0_scaffold58G20406 Striga asiatica HOM05D006341 ORTHO05D000377 5.2e-159 565.1 478 61.1
SalBow1G4312 Salvia bowleyana HOM05D006341 ORTHO05D000377 1.2e-158 563.9 491 58.5
CARHR111910 Cardamine hirsuta HOM05D006341 ORTHO05D000377 4.4e-158 562.0 479 60.5
arahy.Tifrunner.gnm1.ann1.MR7L4V Arachis hypogaea HOM05D006341 ORTHO05D000377 7.5e-158 561.2 492 58.1
Aa31LG7G15600 Aethionema arabicum HOM05D006341 ORTHO05D000377 9.8e-158 560.8 475 60.0
arahy.Tifrunner.gnm1.ann1.UN7M5W Arachis hypogaea HOM05D006341 ORTHO05D000377 9.8e-158 560.8 493 58.2
C04p50300 Brassica napus HOM05D006341 ORTHO05D000377 9.8e-158 560.8 477 60.4
BolC4t26628H Brassica oleracea HOM05D006341 ORTHO05D000377 9.8e-158 560.8 477 60.4
Ca_18243_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 4.8e-157 558.5 465 61.3
ECA233G1460 Erigeron canadensis HOM05D006341 ORTHO05D000377 4.8e-157 558.5 471 60.3
A04p15870 Brassica napus HOM05D006341 ORTHO05D000377 1.8e-156 556.6 477 60.2
Dinv39489 Davidia involucrata HOM05D006341 ORTHO05D000377 3.1e-156 555.8 472 60.6
BraA04t17219Z Brassica rapa HOM05D006341 ORTHO05D000377 1.0e-154 550.8 477 59.3
Sed0009186 Sechium edule HOM05D006341 ORTHO05D000377 5.0e-154 548.5 454 62.1
MELO3C013369.2 Cucumis melo HOM05D006341 ORTHO05D000377 1.9e-153 546.6 453 61.6
Glyma.08G087700 Glycine max HOM05D006341 ORTHO05D000377 1.2e-152 543.9 494 56.9
Nitab4.5_0001903g0070 Nicotiana tabacum HOM05D006341 ORTHO05D000377 4.7e-152 542.0 464 59.3
ClCG02G004230 Citrullus lanatus HOM05D006341 ORTHO05D000377 3.7e-149 532.3 513 57.9
CDE05G1540 Ceratophyllum demersum HOM05D006341 ORTHO05D000377 1.8e-148 530.0 503 54.7
Lalb_Chr13g0293551 Lupinus albus HOM05D006341 ORTHO05D000377 3.1e-148 529.3 518 55.2
unitig_60.g25823 Utricularia gibba HOM05D006341 ORTHO05D000377 1.0e-146 524.2 470 55.7
SHI05717 Sapria himalayana HOM05D006341 ORTHO05D000377 6.6e-146 521.5 485 56.5
QL11p048584 Quercus lobata HOM05D006341 ORTHO05D000377 3.3e-145 519.2 440 60.9
Glyma.05G133200 Glycine max HOM05D006341 ORTHO05D000377 9.5e-145 517.7 488 55.5
ATR0810G159 Amborella trichopoda HOM05D006341 ORTHO05D000377 1.0e-143 514.2 510 53.3
Os02g0121200 Oryza sativa ssp. japonica HOM05D006341 ORTHO05D000377 1.2e-142 510.8 477 55.1
VMungo0251G3227 Vigna mungo HOM05D006341 ORTHO05D000377 2.0e-142 510.0 456 58.1
Ah.01g008830 Amaranthus hybridus HOM05D006341 ORTHO05D000377 9.8e-142 507.7 493 55.8
HPP92_014019 Vanilla planifolia HOM05D006341 ORTHO05D000377 2.7e-139 499.6 483 53.6
Cpa.g.sc37.173 Carica papaya HOM05D006341 ORTHO05D000377 1.1e-137 494.2 468 56.0
Phvul.002G189600 Phaseolus vulgaris HOM05D006341 ORTHO05D000377 7.3e-129 464.9 489 52.1
SEGI_13829 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 1.3e-125 454.1 494 50.8
SEGI_22420 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 1.3e-125 454.1 494 50.8
Atru.chr5.3221 Acer truncatum HOM05D006341 ORTHO05D000377 1.9e-124 450.3 276 81.2
CiPaw.06G124100 Carya illinoinensis HOM05D006341 ORTHO05D000377 1.1e-121 441.0 331 68.3
Potri.009G131700 Populus trichocarpa HOM05D006341 ORTHO05D000377 1.3e-117 427.6 313 69.0
Mapoly0085s0033 Marchantia polymorpha HOM05D006341 ORTHO05D000377 4.9e-117 425.6 559 42.2
AagrBONN_evm.TU.Sc2ySwM_228.2682 Anthoceros agrestis HOM05D006341 ORTHO05D000377 2.5e-113 413.3 474 46.2
Pp3c8_21040 Physcomitrium patens HOM05D006341 ORTHO05D000377 5.8e-110 402.1 550 42.4
Zm00001eb208320 Zea mays HOM05D006341 ORTHO05D000377 1.9e-105 387.1 403 51.9
Carub.0004s0010 Capsella rubella HOM05D006341 ORTHO05D000377 3.3e-97 359.8 471 46.3
Nitab4.5_0008354g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 3.3e-97 359.8 355 54.6
Ca_18241_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 1.6e-96 357.5 464 45.3
SMO169G0079 Selaginella moellendorffii HOM05D006341 ORTHO05D000377 8.2e-88 328.6 451 43.2
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 2.3e-74 283.9 290 54.8
Sabra09G0102100 Salix brachista HOM05D006341 ORTHO05D000377 3.1e-71 273.5 432 42.4
PGSC0003DMG401028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 1.4e-63 248.1 143 77.6
MCO01G168 Micromonas commoda HOM05D006341 ORTHO05D000377 2.2e-53 214.2 314 37.3
Cre01.g044150 Chlamydomonas reinhardtii HOM05D006341 ORTHO05D000377 2.3e-50 204.1 391 32.2
PGSC0003DMG402028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 4.8e-40 169.9 152 56.6
FAN07G1625 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.8e-39 167.9 111 71.2
PRCOL_00006207 Prasinoderma coloniale HOM05D006341 ORTHO05D000377 8.9e-34 149.1 338 29.9
CBR_g23939 Chara braunii HOM05D006341 ORTHO05D000377 1.3e-32 145.2 214 37.9
Actinidia20497 Actinidia chinensis HOM05D006341 ORTHO05D000377 4.7e-27 126.7 73 78.1
Oeu063293.1 Olea europaea HOM05D006341 ORTHO05D000377 2.6e-25 120.9 148 50.7
FAN07G2354 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.3e-24 118.6 143 48.3
Atru.chr5.3222 Acer truncatum HOM05D006341 ORTHO05D000377 1.2e-22 112.1 60 91.7


User provided reference genes

Program Settings