Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.2692 Acer truncatum HOM05D003792 ORTHO05D003195 2.4e-153 545.4 273 100.0
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 6.2e-48 195.3 287 45.3
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 4.9e-45 185.7 285 47.7
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 2.8e-40 169.9 285 44.9
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 8.1e-40 168.3 286 43.0
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 6.9e-39 165.2 231 46.8
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 8.4e-37 158.3 235 47.7
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 8.4e-37 158.3 282 41.1
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.4e-36 157.5 282 40.8
Ciclev10029147m.g Citrus clementina HOM05D003792 ORTHO05D003195 1.9e-36 157.1 249 45.4
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 3.2e-36 156.4 286 41.6
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.3e-34 151.0 280 42.1
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 8.1e-32 141.7 250 42.0
Potri.009G101400 Populus trichocarpa HOM05D003792 ORTHO05D003195 8.1e-32 141.7 277 40.8
Sabra09G0077200 Salix brachista HOM05D003792 ORTHO05D003195 1.1e-31 141.4 273 39.9
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 5.3e-31 139.0 264 40.9
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.5e-30 137.5 284 37.7
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.5e-25 120.2 289 37.7
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 2.8e-24 116.7 189 43.4
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 8.1e-24 115.2 277 32.1
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 8.1e-24 115.2 230 36.5
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 1.4e-23 114.4 277 31.8
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 9.0e-23 111.7 252 37.3
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 1.2e-22 111.3 327 32.1
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 1.5e-22 110.9 258 37.2
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 4.5e-22 109.4 242 36.8
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 7.6e-22 108.6 181 39.8
Duzib052G0481 Durio zibethinus HOM05D003792 ORTHO05D003195 3.8e-21 106.3 280 35.4
Glyma.07G213000 Glycine max HOM05D003792 ORTHO05D003195 1.4e-20 104.4 269 33.8
Cc02_g18840 Coffea canephora HOM05D011234 ORTHO05D003195 1.9e-20 104.0 242 36.8
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 1.9e-20 104.0 236 36.0
Gorai.002G008300 Gossypium raimondii HOM05D003792 ORTHO05D003195 2.5e-20 103.6 232 38.8
Lalb_Chr05g0219211 Lupinus albus HOM05D003792 ORTHO05D003195 2.5e-20 103.6 281 33.5
arahy.Tifrunner.gnm1.ann1.I5Q2RG Arachis hypogaea HOM05D003792 ORTHO05D003195 3.2e-20 103.2 297 33.0
Gohir.A01G007200 Gossypium hirsutum HOM05D003792 ORTHO05D003195 7.1e-20 102.1 232 39.2
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 9.3e-20 101.7 234 33.8
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 9.3e-20 101.7 240 35.0
Potri.004G140701 Populus trichocarpa HOM05D003792 ORTHO05D003195 2.1e-19 100.5 217 36.4
arahy.Tifrunner.gnm1.ann1.SW5XY7 Arachis hypogaea HOM05D003792 ORTHO05D003195 2.7e-19 100.1 297 32.3
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 7.9e-19 98.6 229 32.8
Lj4g0023306 Lotus japonicus HOM05D003792 ORTHO05D003195 3.0e-18 96.7 283 32.9
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 5.1e-18 95.9 204 38.2
PGR042G0828 Punica granatum HOM05D003792 ORTHO05D003195 5.1e-18 95.9 263 31.2
Medtr4g085990 Medicago truncatula HOM05D003792 ORTHO05D003195 1.1e-17 94.7 263 33.1
Lj5C209G18 Lonicera japonica HOM05D003792 ORTHO05D003195 1.5e-17 94.4 217 34.6
Gohir.D01G007300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.5e-17 93.6 224 37.5
Glyma.02G131800 Glycine max HOM05D003792 ORTHO05D003195 4.3e-17 92.8 265 31.7
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 4.3e-17 92.8 245 33.1
Nn1g04847 Nelumbo nucifera HOM05D003792 ORTHO05D003195 5.7e-17 92.4 187 35.8
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 9.6e-17 91.7 240 35.0
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 9.6e-17 91.7 213 35.7
Lalb_Chr09g0328351 Lupinus albus HOM05D003792 ORTHO05D003195 1.6e-16 90.9 281 34.2
ClCG02G005970 Citrullus lanatus HOM05D003792 ORTHO05D003195 2.8e-16 90.1 218 39.0
MELO3C018454.2 Cucumis melo HOM05D003792 ORTHO05D003195 4.8e-16 89.4 225 36.0
Oeu025580.1 Olea europaea HOM05D003792 ORTHO05D003195 4.8e-16 89.4 231 35.5
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 1.4e-15 87.8 242 31.4
TPR.G12693 Trifolium pratense HOM05D003792 ORTHO05D003195 2.4e-15 87.0 273 31.5
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 2.4e-15 87.0 225 32.9
RcHm_v2.0_Chr6g0257491 Rosa chinensis HOM05D025254 ORTHO05D003195 3.1e-15 86.7 309 31.4
Sed0006191 Sechium edule HOM05D003792 ORTHO05D003195 4.1e-15 86.3 233 35.2
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 9.0e-15 85.1 198 37.9
FAN20G1193 Fragaria x ananassa HOM05D025254 ORTHO05D003195 1.2e-14 84.7 276 33.3
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.5e-14 84.3 220 33.6
Phvul.003G291900 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 1.5e-14 84.3 193 33.7
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 4.5e-14 82.8 220 35.0
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 7.6e-14 82.0 234 32.9
FAN15G2062 Fragaria x ananassa HOM05D025254 ORTHO05D003195 1.3e-13 81.3 276 33.0
FvH4_2g05920 Fragaria vesca HOM05D025254 ORTHO05D003195 2.9e-13 80.1 276 32.6
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 3.8e-13 79.7 196 34.2
FAN27G2730 Fragaria x ananassa HOM05D025254 ORTHO05D003195 5.0e-13 79.3 276 33.0
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 6.5e-13 79.0 232 31.0
Prupe.8G126300 Prunus persica HOM05D003792 ORTHO05D003195 6.5e-13 79.0 163 38.7
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 1.1e-12 78.2 199 31.2
SalBow6G6536 Salvia bowleyana HOM05D011234 ORTHO05D003195 1.1e-12 78.2 236 31.8
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 1.9e-12 77.4 196 34.2
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 3.2e-12 76.6 211 33.2
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 3.2e-12 76.6 195 33.8
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 3.2e-12 76.6 198 33.3
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 3.2e-12 76.6 228 34.2
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 4.2e-12 76.3 198 35.4
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 5.5e-12 75.9 200 33.0
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 9.3e-12 75.1 195 35.4
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.2e-11 74.7 235 31.1
VMungo0251G0642 Vigna mungo HOM05D003792 ORTHO05D003195 1.6e-11 74.3 228 32.0
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 2.1e-11 73.9 195 33.8
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 2.1e-11 73.9 120 44.2
Migut.B00353 Erythranthe guttata HOM05D011234 ORTHO05D003195 2.7e-11 73.6 233 29.2
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 2.7e-11 73.6 200 33.5
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 3.5e-11 73.2 195 33.3
Psat7g125520 Pisum sativum HOM05D003792 ORTHO05D003195 4.6e-11 72.8 222 33.8
Peaxi162Scf00016g01956 Petunia axillaris HOM05D011234 ORTHO05D003195 1.3e-10 71.2 242 31.8
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 1.3e-10 71.2 208 34.1
PGSC0003DMG401025788 Solanum tuberosum HOM05D011234 ORTHO05D003195 1.3e-10 71.2 240 32.5
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 1.8e-10 70.9 230 31.7
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 2.3e-10 70.5 231 31.6
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 2.3e-10 70.5 231 31.6
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 2.3e-10 70.5 182 35.7
THA.LOC104814167 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 3.0e-10 70.1 251 30.7
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 3.0e-10 70.1 250 32.4
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 3.9e-10 69.7 230 30.4
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 3.9e-10 69.7 223 31.8
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 3.9e-10 69.7 230 27.8
Carub.0008s0601 Capsella rubella HOM05D003792 ORTHO05D003195 5.1e-10 69.3 227 31.7
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 5.1e-10 69.3 223 32.3
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 5.1e-10 69.3 223 31.8
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 5.1e-10 69.3 182 35.7
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 8.7e-10 68.6 194 31.4
Oeu007289.1 Olea europaea HOM05D011234 ORTHO05D003195 2.5e-09 67.0 185 33.0
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 2.5e-09 67.0 193 34.2
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 2.5e-09 67.0 200 33.0
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 2.5e-09 67.0 195 28.7
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 4.3e-09 66.2 207 30.9
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 4.3e-09 66.2 239 29.7
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 5.7e-09 65.9 194 35.1
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 5.7e-09 65.9 250 27.2
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 7.4e-09 65.5 239 30.5
Sopen01g050330 Solanum pennellii HOM05D011234 ORTHO05D003195 7.4e-09 65.5 242 31.0
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 9.7e-09 65.1 258 27.5
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 1.6e-08 64.3 222 30.2
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 1.6e-08 64.3 200 29.5
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 1.6e-08 64.3 200 29.5
MSTRG.5362 Avicennia marina HOM05D011234 ORTHO05D003195 1.6e-08 64.3 212 30.7
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 2.2e-08 63.9 236 29.7
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 2.2e-08 63.9 233 29.6
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 2.2e-08 63.9 239 30.1
PSO170G6463 Papaver somniferum HOM05D003792 ORTHO05D003195 2.2e-08 63.9 195 31.3
Sabra02G0098600 Salix brachista HOM05D000207 ORTHO05D003195 2.2e-08 63.9 269 29.0
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 2.8e-08 63.5 231 29.0
Peaxi162Scf00003g02336 Petunia axillaris HOM05D011234 ORTHO05D003195 3.7e-08 63.2 202 29.7
Sp7g31720 Schrenkiella parvula HOM05D009953 ORTHO05D003195 4.8e-08 62.8 221 29.9
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.3e-08 62.4 245 30.6
Nitab4.5_0002543g0100 Nicotiana tabacum HOM05D011234 ORTHO05D003195 8.2e-08 62.0 231 30.3
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 1.1e-07 61.6 191 30.4
AUR62042730 Chenopodium quinoa HOM05D043499 ORTHO05D003195 1.4e-07 61.2 191 31.4
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 1.4e-07 61.2 211 29.4
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 1.8e-07 60.8 237 28.3
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 1.8e-07 60.8 221 29.0
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 2.4e-07 60.5 220 28.6
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 2.4e-07 60.5 210 30.5
MBI03_g13463_MAGBIO Magnolia biondii HOM05D003792 ORTHO05D003195 2.4e-07 60.5 175 31.4
PGSC0003DMG400006224 Solanum tuberosum HOM05D011234 ORTHO05D003195 3.1e-07 60.1 245 29.0
Gohir.A01G120000 Gossypium hirsutum HOM05D003792 ORTHO05D003195 4.1e-07 59.7 191 28.8
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 5.3e-07 59.3 233 29.6
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 5.3e-07 59.3 233 29.6
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 5.3e-07 59.3 241 28.2
BcaC06g31740 Brassica carinata HOM05D003792 ORTHO05D003195 6.9e-07 58.9 223 28.3
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 9.0e-07 58.5 198 30.3
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 1.2e-06 58.2 187 33.2
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.5e-06 57.8 213 31.0
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 1.5e-06 57.8 181 29.8
Sed0003020 Sechium edule HOM05D003792 ORTHO05D003195 1.5e-06 57.8 197 28.9
Solyc01g108100.3 Solanum lycopersicum HOM05D011234 ORTHO05D003195 1.5e-06 57.8 241 28.6
Nitab4.5_0007480g0060 Nicotiana tabacum HOM05D011234 ORTHO05D003195 2.0e-06 57.4 137 35.0
BcaC04g21959 Brassica carinata HOM05D003792 ORTHO05D003195 4.5e-06 56.2 211 30.3
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 4.5e-06 56.2 222 30.2
Sc02g0007160 Simmondsia chinensis HOM05D003792 ORTHO05D003195 5.9e-06 55.8 208 28.4


User provided reference genes

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