Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1721.8 847 100.0
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1438.3 845 84.5
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1365.1 845 79.8
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1346.3 818 80.0
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1345.9 841 77.8
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1341.6 818 79.5
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1336.6 818 79.5
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1335.9 827 78.8
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1335.5 818 79.2
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1335.1 821 79.4
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1328.2 836 78.3
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1327.4 853 77.8
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1326.6 820 78.4
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1317.8 848 75.9
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1313.1 822 78.6
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1310.0 831 77.6
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1308.9 751 83.1
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1299.3 763 81.8
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1297.7 846 76.4
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1296.6 751 82.4
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1293.9 845 76.4
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1285.0 839 75.6
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1279.2 823 75.6
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1276.9 763 79.9
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1273.8 833 76.4
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1273.5 818 75.6
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1268.4 815 76.2
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1259.6 843 73.3
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1257.3 813 76.4
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1252.3 757 77.8
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1251.9 821 75.8
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1250.0 812 76.0
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1249.6 818 74.8
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1248.0 754 79.4
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1246.9 837 74.2
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1246.9 801 75.3
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1246.1 755 79.1
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1243.8 747 79.7
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1243.4 816 75.2
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1241.9 824 73.3
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1241.5 747 80.3
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1238.8 751 79.5
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1237.6 848 73.5
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1236.9 821 74.7
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1236.9 750 78.9
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1234.2 763 78.4
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1233.4 759 78.0
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1231.9 740 79.7
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1231.1 822 73.5
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1230.3 816 73.3
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1230.3 821 73.7
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1227.2 837 73.6
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1222.2 798 74.9
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1221.8 759 76.8
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1219.1 753 77.4
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1218.8 765 77.0
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1214.9 833 73.7
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1214.1 760 77.1
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1213.7 814 73.1
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1213.0 822 72.1
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1213.0 808 73.3
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1212.2 809 73.8
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1211.4 854 71.5
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1211.1 801 73.2
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1210.7 820 72.9
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1208.0 815 72.6
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1202.6 808 72.9
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1200.7 809 72.9
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1200.3 815 72.5
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1194.5 812 72.7
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1192.9 810 72.1
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1191.4 813 71.2
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1191.0 812 72.2
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1190.3 813 72.6
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1185.6 747 75.0
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1182.9 692 82.5
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1151.0 867 66.8
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1149.0 775 73.9
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1142.5 763 72.2
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1138.6 794 71.7
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 0.0e+00 1136.3 688 78.9
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1129.8 764 71.9
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 0.0e+00 1115.5 863 65.7
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 0.0e+00 1114.4 662 80.7
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 0.0e+00 1111.7 703 76.7
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1107.4 753 73.0
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 0.0e+00 1104.0 695 76.0
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 0.0e+00 1102.4 819 68.1
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 7.0e-311 1070.5 744 71.0
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 2.4e-308 1062.0 684 74.7
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 2.7e-307 1058.5 902 61.6
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 2.3e-303 1045.4 625 81.3
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 3.0e-282 975.3 740 60.8
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 1.5e-281 973.0 747 61.8
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 1.1e-268 930.2 756 58.6
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 5.6e-265 917.9 609 73.9
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 1.6e-259 899.8 641 67.6
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 4.3e-249 865.1 689 64.7
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 2.0e-246 856.3 627 64.8
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 5.9e-222 775.0 662 55.9
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 4.2e-212 742.3 522 68.2
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 6.8e-170 602.1 875 39.8
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 4.6e-158 562.8 595 53.1
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 7.3e-148 528.9 354 66.7
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 1.9e-127 461.1 352 66.2
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 8.5e-96 355.9 269 64.7
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 8.8e-85 319.3 289 60.2
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 5.4e-74 283.5 235 61.7
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.8e-69 268.5 254 56.7
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 1.5e-63 248.8 148 77.0
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 8.3e-51 206.5 122 77.0
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 1.9e-42 178.7 142 59.9
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 1.3e-40 172.6 127 63.8
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 1.3e-35 156.0 104 69.2
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 2.2e-27 128.6 93 65.6
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 2.7e-25 121.7 107 54.2
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 3.3e-23 114.8 161 42.9
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 1.9e-18 99.0 62 75.8
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 1.0e-16 93.2 110 50.9
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 9.6e-15 86.7 56 75.0
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 2.0e-12 79.0 45 77.8
TWI23G1065 Tripterygium wilfordii HOM05D000161 ORTHO05D414009 7.6e-12 77.0 122 46.7
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 3.8e-11 74.7 43 74.4
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 3.0e-08 65.1 41 73.2
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 5.7e-07 60.8 70 50.0
Medtr5g010890 Medicago truncatula HOM05D000161 ORTHO05D036718 8.2e-06 57.0 46 63.0


User provided reference genes

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