Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 4.9e-44 180.6 85 100.0
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 3.5e-42 174.5 82 98.8
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 3.5e-42 174.5 82 98.8
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 7.8e-42 173.3 82 97.6
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 8.7e-41 169.9 82 95.1
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 8.7e-41 169.9 82 95.1
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 2.5e-40 168.3 82 93.9
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 3.3e-40 167.9 82 93.9
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 4.3e-40 167.5 82 93.9
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 4.3e-40 167.5 82 93.9
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 5.6e-40 167.2 82 93.9
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 7.3e-40 166.8 82 96.3
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 7.3e-40 166.8 82 96.3
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 9.6e-40 166.4 83 96.4
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 9.6e-40 166.4 83 95.2
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 9.6e-40 166.4 83 96.4
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 1.3e-39 166.0 81 95.1
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 1.3e-39 166.0 80 93.8
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.3e-39 166.0 81 95.1
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.3e-39 166.0 81 95.1
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.3e-39 166.0 81 95.1
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 1.3e-39 166.0 82 93.9
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 1.3e-39 166.0 82 93.9
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 1.3e-39 166.0 81 95.1
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 1.6e-39 165.6 85 91.8
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 2.1e-39 165.2 79 96.2
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 2.1e-39 165.2 79 94.9
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.8e-39 164.9 81 93.8
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 2.8e-39 164.9 81 93.8
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 3.6e-39 164.5 79 94.9
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 4.8e-39 164.1 79 94.9
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 4.8e-39 164.1 79 94.9
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.8e-39 164.1 79 93.7
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.8e-39 164.1 79 93.7
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 4.8e-39 164.1 84 92.9
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 4.8e-39 164.1 80 93.8
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 4.8e-39 164.1 81 92.6
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 6.2e-39 163.7 78 96.2
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 6.2e-39 163.7 78 96.2
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 6.2e-39 163.7 80 91.2
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 6.2e-39 163.7 80 91.2
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 6.2e-39 163.7 81 92.6
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 8.1e-39 163.3 80 91.2
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 8.1e-39 163.3 81 95.1
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 1.1e-38 162.9 79 93.7
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 1.1e-38 162.9 79 94.9
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 1.4e-38 162.5 82 91.5
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 1.4e-38 162.5 79 93.7
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.4e-38 162.5 81 91.4
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.4e-38 162.5 78 94.9
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 1.4e-38 162.5 82 91.5
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 1.8e-38 162.2 80 93.8
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 1.8e-38 162.2 80 91.2
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 2.4e-38 161.8 82 91.5
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 2.4e-38 161.8 81 90.1
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 2.4e-38 161.8 79 93.7
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 2.4e-38 161.8 79 93.7
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 2.4e-38 161.8 79 93.7
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 2.4e-38 161.8 79 93.7
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.4e-38 161.8 79 91.1
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 2.4e-38 161.8 79 93.7
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 2.4e-38 161.8 83 92.8
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 2.4e-38 161.8 78 93.6
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 2.4e-38 161.8 79 93.7
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 2.4e-38 161.8 80 90.0
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 3.1e-38 161.4 85 87.1
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 3.1e-38 161.4 83 90.4
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 3.1e-38 161.4 83 90.4
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 4.0e-38 161.0 79 89.9
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 4.0e-38 161.0 80 91.2
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 4.0e-38 161.0 79 93.7
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 4.0e-38 161.0 79 91.1
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 4.0e-38 161.0 79 92.4
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 4.0e-38 161.0 79 92.4
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 4.0e-38 161.0 79 93.7
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 4.0e-38 161.0 79 93.7
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 5.3e-38 160.6 81 92.6
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 5.3e-38 160.6 87 87.4
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 5.3e-38 160.6 78 93.6
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 5.3e-38 160.6 82 91.5
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 6.9e-38 160.2 82 89.0
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 6.9e-38 160.2 83 92.8
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 6.9e-38 160.2 83 90.4
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 6.9e-38 160.2 83 90.4
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 6.9e-38 160.2 83 90.4
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 6.9e-38 160.2 83 90.4
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 6.9e-38 160.2 83 90.4
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 6.9e-38 160.2 83 90.4
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 6.9e-38 160.2 81 90.1
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 6.9e-38 160.2 83 91.6
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 6.9e-38 160.2 76 94.7
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 6.9e-38 160.2 83 90.4
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 6.9e-38 160.2 79 91.1
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 6.9e-38 160.2 82 92.7
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 6.9e-38 160.2 80 91.2
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 9.0e-38 159.8 82 90.2
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 9.0e-38 159.8 82 90.2
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 9.0e-38 159.8 82 90.2
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 9.0e-38 159.8 78 94.9
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.2e-37 159.5 81 91.4
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.2e-37 159.5 81 91.4
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.2e-37 159.5 81 91.4
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.2e-37 159.5 81 91.4
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 1.2e-37 159.5 82 89.0
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.2e-37 159.5 83 91.6
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 1.2e-37 159.5 82 89.0
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.2e-37 159.5 78 92.3
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.2e-37 159.5 78 92.3
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 1.2e-37 159.5 80 90.0
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 1.5e-37 159.1 81 90.1
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 1.5e-37 159.1 79 92.4
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 1.5e-37 159.1 79 92.4
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.5e-37 159.1 83 89.2
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 1.5e-37 159.1 83 90.4
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 2.0e-37 158.7 81 90.1
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 2.6e-37 158.3 78 91.0
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 2.6e-37 158.3 78 91.0
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 2.6e-37 158.3 78 91.0
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 2.6e-37 158.3 75 94.7
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 3.4e-37 157.9 81 88.9
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 3.4e-37 157.9 80 91.2
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 5.8e-37 157.1 79 91.1
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 5.8e-37 157.1 76 92.1
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 9.9e-37 156.4 75 93.3
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 9.9e-37 156.4 79 89.9
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 9.9e-37 156.4 79 89.9
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 9.9e-37 156.4 79 88.6
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 1.3e-36 156.0 83 89.2
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 1.3e-36 156.0 79 89.9
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 2.2e-36 155.2 84 88.1
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 2.9e-36 154.8 79 89.9
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 2.9e-36 154.8 79 89.9
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 3.8e-36 154.5 79 88.6
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 4.9e-36 154.1 76 92.1
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 4.9e-36 154.1 79 88.6
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 2.7e-34 148.3 76 89.5
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 4.6e-34 147.5 87 81.6
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 6.0e-34 147.1 83 83.1
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 6.0e-34 147.1 83 83.1
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 7.9e-34 146.7 85 82.4
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.9e-32 142.1 75 84.0
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 4.3e-32 141.0 74 90.5
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 1.6e-31 139.0 75 86.7
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 2.1e-31 138.7 83 81.9
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.8e-30 135.6 64 96.9
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 4.0e-30 134.4 79 74.7
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 9.0e-30 133.3 82 79.3
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 2.6e-29 131.7 63 96.8
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 2.2e-28 128.6 82 78.0
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 8.4e-28 126.7 75 72.0
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 1.1e-27 126.3 75 82.7
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 2.4e-27 125.2 75 66.7
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 4.2e-27 124.4 75 74.7
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 4.6e-26 120.9 77 76.6
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 8.7e-25 116.7 79 72.2
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.1e-24 116.3 66 83.3
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.3e-15 86.3 47 80.9
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 4.2e-11 71.2 34 94.1
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 1.6e-10 69.3 34 88.2
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 1.6e-10 69.3 34 85.3
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 6.1e-10 67.4 34 88.2
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 2.3e-09 65.5 34 88.2
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.3e-09 65.5 34 88.2


User provided reference genes

Program Settings