Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 3.4e-109 398.3 191 100.0
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 4.1e-107 391.3 191 97.4
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 7.3e-104 380.6 191 94.8
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 4.7e-103 377.9 191 94.8
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 4.7e-103 377.9 191 94.8
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 6.2e-103 377.5 191 93.7
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 6.2e-103 377.5 191 94.2
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 1.0e-102 376.7 191 94.2
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 2.3e-102 375.6 191 93.7
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 8.9e-102 373.6 191 92.1
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 8.9e-102 373.6 189 93.1
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.5e-101 372.9 191 92.7
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 2.6e-101 372.1 189 92.6
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 2.6e-101 372.1 186 94.1
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 4.4e-101 371.3 191 92.1
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 5.8e-101 370.9 186 94.1
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 5.8e-101 370.9 186 94.1
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 5.8e-101 370.9 186 94.1
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 5.8e-101 370.9 192 92.7
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 9.8e-101 370.2 193 91.7
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 9.8e-101 370.2 192 92.7
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 2.2e-100 369.0 191 90.6
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.2e-100 369.0 191 92.7
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 2.2e-100 369.0 185 93.5
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.9e-100 368.6 192 92.2
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.9e-100 368.6 192 92.2
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 2.9e-100 368.6 191 90.1
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 3.7e-100 368.2 189 91.5
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 3.7e-100 368.2 191 90.1
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 3.7e-100 368.2 191 89.5
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 4.9e-100 367.9 192 92.2
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 8.3e-100 367.1 191 92.1
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 8.3e-100 367.1 192 92.2
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 8.3e-100 367.1 185 93.5
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 1.4e-99 366.3 193 90.7
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 1.4e-99 366.3 191 90.1
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.4e-99 366.3 192 90.6
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.9e-99 365.9 191 90.1
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.9e-99 365.9 191 90.1
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.9e-99 365.9 191 89.0
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.9e-99 365.9 192 90.1
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.9e-99 365.9 186 92.5
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 3.2e-99 365.2 191 90.1
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.2e-99 365.2 191 90.1
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.2e-99 365.2 191 90.1
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.2e-99 365.2 191 90.1
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.2e-99 365.2 191 90.1
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 3.2e-99 365.2 186 91.9
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 4.1e-99 364.8 193 90.2
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 4.1e-99 364.8 191 90.1
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 5.4e-99 364.4 191 89.5
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 5.4e-99 364.4 185 93.0
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 5.4e-99 364.4 191 89.5
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 7.0e-99 364.0 186 93.0
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 7.0e-99 364.0 192 90.6
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 7.0e-99 364.0 192 90.6
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 9.2e-99 363.6 189 89.4
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 9.2e-99 363.6 186 91.4
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 1.2e-98 363.2 191 89.0
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 1.2e-98 363.2 185 92.4
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 1.2e-98 363.2 185 91.9
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 1.2e-98 363.2 185 92.4
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 1.2e-98 363.2 192 90.6
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.2e-98 363.2 198 88.4
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 1.6e-98 362.8 189 88.9
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 1.6e-98 362.8 189 88.9
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 1.6e-98 362.8 189 88.9
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 1.6e-98 362.8 192 89.6
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 2.0e-98 362.5 191 88.5
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 2.7e-98 362.1 186 90.9
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 2.7e-98 362.1 186 90.9
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 2.7e-98 362.1 186 90.9
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 2.7e-98 362.1 192 90.1
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 3.5e-98 361.7 189 88.4
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 3.5e-98 361.7 189 90.5
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 3.5e-98 361.7 189 90.5
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 3.5e-98 361.7 192 90.1
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 3.5e-98 361.7 191 89.0
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 3.5e-98 361.7 191 90.1
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 3.5e-98 361.7 189 88.9
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 3.5e-98 361.7 191 90.6
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 4.6e-98 361.3 189 88.9
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 4.6e-98 361.3 189 88.9
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 4.6e-98 361.3 186 90.9
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 6.0e-98 360.9 185 91.4
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 1.0e-97 360.1 189 88.4
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 1.0e-97 360.1 189 88.4
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 1.0e-97 360.1 184 91.8
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 1.0e-97 360.1 189 88.4
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 1.0e-97 360.1 188 89.9
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 1.3e-97 359.8 189 87.3
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 1.3e-97 359.8 192 89.1
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 1.3e-97 359.8 188 88.3
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 1.3e-97 359.8 186 90.3
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 1.3e-97 359.8 185 90.8
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 1.3e-97 359.8 191 89.5
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 1.3e-97 359.8 191 89.5
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 1.7e-97 359.4 186 90.9
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 3.0e-97 358.6 191 88.0
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 3.0e-97 358.6 191 89.0
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 3.0e-97 358.6 186 89.8
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 3.9e-97 358.2 189 88.4
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 3.9e-97 358.2 189 88.4
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 3.9e-97 358.2 189 88.4
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 3.9e-97 358.2 192 88.0
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 3.9e-97 358.2 191 88.0
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 6.6e-97 357.5 191 89.5
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 6.6e-97 357.5 191 89.5
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 6.6e-97 357.5 185 90.3
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 8.6e-97 357.1 183 91.8
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 8.6e-97 357.1 189 89.4
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 1.1e-96 356.7 197 86.8
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 1.5e-96 356.3 191 88.5
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 1.9e-96 355.9 192 88.5
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 1.9e-96 355.9 191 88.5
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 2.5e-96 355.5 187 89.8
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 4.3e-96 354.8 186 88.7
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 9.5e-96 353.6 183 90.2
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 9.5e-96 353.6 186 89.2
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 9.5e-96 353.6 191 86.9
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 9.5e-96 353.6 188 88.3
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 1.2e-95 353.2 189 86.8
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.2e-95 353.2 189 86.2
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 1.6e-95 352.8 189 86.8
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 2.1e-95 352.4 211 82.0
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 3.6e-95 351.7 186 88.2
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 4.7e-95 351.3 186 88.7
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 6.2e-95 350.9 188 86.7
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 6.2e-95 350.9 186 87.6
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 8.9e-94 347.1 182 89.0
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 1.5e-93 346.3 191 87.4
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 2.0e-93 345.9 186 86.6
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 1.7e-92 342.8 181 87.8
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 4.9e-92 341.3 189 83.6
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.4e-91 339.7 182 87.9
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.7e-90 335.5 187 87.7
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 8.6e-89 330.5 258 66.3
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 7.3e-88 327.4 183 80.9
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 4.0e-86 321.6 182 83.5
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.7e-84 316.2 167 89.8
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 1.4e-83 313.2 191 78.0
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.6e-81 304.3 185 80.5
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 1.2e-79 300.1 163 84.7
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 9.3e-75 283.9 143 90.9
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 3.9e-73 278.5 141 92.2
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 1.1e-72 276.9 141 91.5
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 3.6e-71 271.9 142 88.0
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.2e-68 262.7 130 91.5
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.2e-67 258.8 187 72.7
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.3e-65 252.7 164 76.2
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 5.1e-65 251.5 138 84.8
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 1.1e-64 250.4 128 88.3
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 9.6e-64 247.3 185 70.8
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 2.8e-63 245.7 146 81.5
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 7.1e-59 231.1 188 54.8
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 1.3e-55 220.3 189 55.6
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 2.9e-52 209.1 166 66.9
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 2.1e-47 193.0 157 65.0
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.1e-43 180.6 90 87.8
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.0e-41 174.1 90 87.8
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.0e-41 174.1 115 71.3
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.5e-40 169.5 103 74.8
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 7.4e-40 167.9 87 83.9
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 1.3e-39 167.2 87 83.9
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.8e-39 166.0 87 83.9
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.8e-39 165.2 87 83.9
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.3e-39 164.9 157 56.1
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.2e-39 164.5 87 82.8
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.2e-39 164.5 87 82.8
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 1.2e-37 160.6 142 62.0
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 4.5e-37 158.7 101 79.2
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.9e-35 153.3 87 80.5
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 8.8e-33 144.4 79 81.0
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 6.3e-31 138.3 70 95.7
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 6.3e-31 138.3 69 81.2
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.6e-24 116.3 62 79.0
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.6e-24 116.3 62 79.0
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.6e-24 116.3 62 79.0
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.6e-24 116.3 62 79.0
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.6e-24 116.3 62 79.0
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.6e-24 116.3 62 79.0
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 2.0e-16 90.1 51 92.2
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 7.5e-16 88.2 44 90.9
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 1.3e-12 77.4 44 84.1


User provided reference genes

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