Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 8.3e-108 393.7 192 100.0
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 5.4e-22 108.6 174 37.9
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 3.5e-21 105.9 174 39.1
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 2.3e-20 103.2 174 39.1
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 2.9e-20 102.8 178 36.5
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 3.8e-20 102.4 174 36.2
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 3.8e-20 102.4 174 36.2
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 5.0e-20 102.1 174 37.9
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 5.0e-20 102.1 174 37.9
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 1.1e-19 100.9 184 37.0
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 1.5e-19 100.5 170 34.7
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 1.9e-19 100.1 175 34.3
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 1.9e-19 100.1 174 36.2
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 2.5e-19 99.8 174 35.6
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 3.3e-19 99.4 174 35.6
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 3.3e-19 99.4 174 35.6
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 5.5e-19 98.6 174 38.5
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 5.5e-19 98.6 174 35.1
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 5.5e-19 98.6 174 37.4
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 7.2e-19 98.2 174 38.5
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 9.5e-19 97.8 174 38.5
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 9.5e-19 97.8 174 38.5
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 9.5e-19 97.8 174 38.5
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-18 97.4 180 35.0
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 1.6e-18 97.1 174 38.5
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 1.6e-18 97.1 174 38.5
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.6e-18 97.1 174 35.1
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 2.1e-18 96.7 174 37.9
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 2.1e-18 96.7 174 34.5
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 2.1e-18 96.7 174 34.5
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 2.1e-18 96.7 175 38.3
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 2.8e-18 96.3 175 37.1
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 3.6e-18 95.9 136 40.4
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 3.6e-18 95.9 174 37.4
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 3.6e-18 95.9 174 37.9
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 4.7e-18 95.5 176 34.1
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 6.1e-18 95.1 174 35.6
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 8.0e-18 94.7 174 37.4
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 8.0e-18 94.7 174 37.4
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 8.0e-18 94.7 174 37.4
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 8.0e-18 94.7 174 35.6
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 1.4e-17 94.0 175 37.1
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 1.4e-17 94.0 174 34.5
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 1.4e-17 94.0 133 41.4
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 1.8e-17 93.6 174 37.4
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 1.8e-17 93.6 174 32.2
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 2.3e-17 93.2 174 36.2
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 3.0e-17 92.8 132 40.2
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 3.0e-17 92.8 175 38.3
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 3.0e-17 92.8 175 38.3
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 3.0e-17 92.8 132 39.4
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 3.0e-17 92.8 175 34.9
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 3.0e-17 92.8 132 40.9
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 4.0e-17 92.4 174 33.9
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 4.0e-17 92.4 176 33.5
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 5.2e-17 92.0 197 31.5
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 1.2e-16 90.9 136 39.0
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-16 90.5 185 34.6
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 1.5e-16 90.5 132 41.7
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 2.6e-16 89.7 174 35.1
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 3.4e-16 89.4 175 32.6
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 3.4e-16 89.4 129 40.3
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 4.4e-16 89.0 191 36.1
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 4.4e-16 89.0 175 33.1
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 7.5e-16 88.2 177 37.9
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 7.5e-16 88.2 177 37.9
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 7.5e-16 88.2 177 37.9
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 7.5e-16 88.2 178 35.4
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 7.5e-16 88.2 178 35.4
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 7.5e-16 88.2 133 39.8
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 9.8e-16 87.8 193 34.2
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-15 87.4 182 33.0
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 3.7e-15 85.9 136 38.2
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.7e-15 85.9 174 31.0
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 6.3e-15 85.1 174 32.8
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 6.3e-15 85.1 180 33.9
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 8.3e-15 84.7 174 32.2
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 1.1e-14 84.3 175 34.3
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 1.4e-14 84.0 174 32.2
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 3.1e-14 82.8 132 35.6
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 3.1e-14 82.8 174 31.0
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 4.1e-14 82.4 174 31.0
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 5.4e-14 82.0 175 30.9
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 9.2e-14 81.3 208 30.3
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 1.2e-13 80.9 137 35.0
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 1.6e-13 80.5 132 34.8
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 1.6e-13 80.5 176 31.2
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 2.7e-13 79.7 171 32.7
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 2.7e-13 79.7 175 33.7
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 3.5e-13 79.3 175 30.9
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 4.5e-13 79.0 175 32.6
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.3e-12 77.4 175 31.4
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 1.3e-12 77.4 129 35.7
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-12 77.0 201 31.8
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-12 77.0 133 37.6
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.3e-12 76.6 174 27.6
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 5.0e-12 75.5 179 28.5
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 8.6e-12 74.7 181 30.9
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 8.6e-12 74.7 133 37.6
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-11 74.3 197 32.5
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 2.5e-11 73.2 184 31.0
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 2.5e-11 73.2 179 31.3
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 2.5e-11 73.2 156 32.1
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 3.3e-11 72.8 174 28.7
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 4.3e-11 72.4 174 30.5
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 7.3e-11 71.6 117 35.0
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 7.3e-11 71.6 174 31.6
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 9.5e-11 71.2 129 32.6
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-10 70.5 170 27.1
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 1.6e-10 70.5 133 34.6
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 1.6e-10 70.5 176 30.1
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 8.0e-10 68.2 129 31.8
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 2.3e-09 66.6 174 30.5
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 2.3e-09 66.6 175 28.0
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 6.8e-09 65.1 132 32.6
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 8.9e-09 64.7 117 31.6
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 8.9e-09 64.7 114 36.0
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 2.0e-08 63.5 167 28.1
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 2.6e-08 63.2 182 28.6
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 3.4e-08 62.8 103 35.9
Atru.chr1.4019 Acer truncatum HOM05D002880 ORTHO05D005623 1.3e-07 60.8 164 28.7
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 2.9e-07 59.7 189 29.1
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 4.9e-07 58.9 175 29.7
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 4.9e-07 58.9 136 32.4
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 1.4e-06 57.4 126 30.2
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 2.4e-06 56.6 121 29.8
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 3.2e-06 56.2 144 30.6
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 3.2e-06 56.2 117 28.2


User provided reference genes

Program Settings