Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 2665.6 1360 100.0
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1891.7 1360 73.9
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1840.5 1357 70.1
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1835.5 1357 70.4
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1777.7 1364 69.4
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1776.9 1358 69.4
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1770.0 1358 69.2
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1764.2 1387 67.5
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1764.2 1360 67.9
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1757.7 1358 68.9
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1714.9 1362 66.6
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1705.3 1374 66.9
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1674.1 1496 62.0
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1671.8 1457 62.7
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1644.8 1358 65.2
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1639.8 1366 64.7
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1630.9 1362 64.9
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1598.2 1364 64.0
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1592.4 1404 61.7
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1579.3 1363 63.8
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1563.5 1477 60.3
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1544.6 1359 61.6
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1509.6 1365 61.2
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1505.7 1360 60.5
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1497.6 1370 61.1
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1491.9 1362 60.3
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1490.3 1351 59.1
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1486.1 1372 60.9
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1484.2 1368 60.3
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1473.0 1361 59.4
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 0.0e+00 1471.8 1381 60.0
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1456.8 1357 58.1
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 1449.1 1372 58.6
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1448.0 1382 57.2
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 1446.4 1422 58.2
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1445.3 1362 58.1
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1438.7 1408 57.3
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1434.5 1357 58.1
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 1433.3 1364 56.9
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1430.6 1371 58.2
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1427.9 1389 57.0
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1426.4 1366 57.4
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 1417.1 1360 56.9
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1416.0 1371 56.6
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1414.8 1404 57.0
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1404.8 1406 56.2
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1401.7 1410 56.3
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 1400.6 1412 55.0
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1400.2 1441 55.2
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1397.9 1380 56.7
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1394.4 1364 58.6
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1392.1 1395 57.7
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1389.0 1377 56.8
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1388.6 1363 58.4
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1387.5 1374 55.7
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1383.6 1358 56.6
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1381.7 1355 57.4
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 0.0e+00 1380.5 1361 56.6
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1380.5 1358 56.0
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1357.0 1385 56.0
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1356.3 1418 54.2
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1353.6 1403 54.7
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1352.4 1402 54.0
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1344.3 1365 54.0
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 0.0e+00 1343.2 1360 55.1
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 0.0e+00 1338.6 1365 53.9
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1334.3 1368 53.7
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 0.0e+00 1328.5 1369 54.4
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1325.5 1358 55.7
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 0.0e+00 1325.1 1367 54.0
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1323.9 1367 53.4
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1323.9 1367 53.4
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 0.0e+00 1323.9 1367 53.4
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 0.0e+00 1319.7 1371 53.2
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1317.8 1370 54.2
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 0.0e+00 1315.4 1361 53.5
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 0.0e+00 1305.0 1365 52.7
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 0.0e+00 1295.8 1360 54.3
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1285.8 1387 52.5
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1284.2 1371 52.7
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 1278.8 1442 51.3
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 0.0e+00 1271.9 1323 54.4
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 0.0e+00 1268.4 1080 63.4
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 0.0e+00 1266.9 1363 52.3
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 0.0e+00 1261.9 1370 52.3
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 0.0e+00 1258.0 1373 52.7
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 0.0e+00 1255.0 1358 53.8
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1179.9 1276 53.1
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 0.0e+00 1179.1 1384 50.3
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 0.0e+00 1165.2 1360 49.6
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 0.0e+00 1113.2 1368 47.7
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 0.0e+00 1093.2 1395 47.9
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 0.0e+00 1090.9 915 64.7
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 0.0e+00 1080.5 1109 55.3
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 1.3e-303 1047.0 1320 48.0
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 1.4e-302 1043.5 916 61.7
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 3.7e-258 896.0 829 60.6
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 1.3e-250 870.9 855 56.5
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.6e-245 852.4 714 64.1
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 5.7e-243 845.5 683 65.4
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 2.8e-242 843.2 680 65.9
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 3.9e-236 822.8 925 53.6
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 1.7e-234 817.4 643 68.6
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 2.1e-229 800.4 788 57.7
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 3.7e-202 709.9 847 49.0
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.1e-188 665.2 480 70.0
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 5.1e-175 619.8 1286 34.3
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 6.2e-173 612.8 597 55.9
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 8.1e-173 612.5 1367 34.5
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 1.9e-161 574.7 358 80.4
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 9.9e-155 552.4 645 47.8
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 2.8e-149 534.3 508 56.9
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 3.0e-143 514.2 1365 29.6
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 5.1e-143 513.5 1333 30.2
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 4.1e-140 503.8 1142 33.7
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.2e-139 502.3 358 69.0
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 1.5e-134 485.3 1052 34.1
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.2e-120 439.1 417 53.0
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 6.8e-103 380.2 439 46.7
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.8e-101 374.8 674 36.9
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 5.7e-86 323.9 326 50.6
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 2.7e-83 315.1 238 65.1
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 9.5e-81 306.6 319 53.9
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 1.2e-80 306.2 374 51.1
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.6e-80 305.8 351 51.0
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.5e-73 282.0 229 65.9
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 2.4e-68 265.4 324 46.6
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 1.3e-53 216.5 269 45.7
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 7.8e-51 207.2 284 43.3
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.0e-47 194.9 120 79.2
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 4.5e-46 191.4 203 55.2
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 2.1e-35 156.0 523 26.6
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 2.5e-33 149.1 270 38.9
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 8.2e-32 144.1 371 29.9
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 2.5e-28 132.5 217 42.4
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 7.1e-28 131.0 173 49.1
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.7e-27 129.0 166 47.0
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 1.9e-25 122.9 90 65.6
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 2.5e-25 122.5 469 23.9
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.5e-20 105.9 440 26.6
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 1.2e-19 103.6 495 26.3
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 3.8e-13 82.0 86 54.7
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 1.9e-12 79.7 70 58.6
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 3.2e-12 79.0 81 53.1
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.7e-11 75.9 284 27.1
Sabra05G0049200 Salix brachista HOM05D005030 ORTHO05D006490 2.8e-08 65.9 97 45.4
TAR625G0866 Trochodendron aralioides HOM05D005030 ORTHO05D006490 3.1e-07 62.4 45 68.9
TAR376G0051 Trochodendron aralioides HOM05D005030 ORTHO05D006490 5.9e-06 58.2 116 39.7


User provided reference genes

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