Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 8.6e-302 1039.6 571 100.0
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 8.6e-302 1039.6 571 100.0
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 8.0e-191 671.0 581 64.0
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 9.0e-166 587.8 494 62.8
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 2.6e-165 586.3 494 64.8
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 1.5e-160 570.5 494 61.5
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 5.6e-160 568.5 487 63.7
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.1e-159 566.6 497 63.2
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 8.4e-156 554.7 484 60.3
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.1e-155 554.3 484 59.9
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 5.4e-155 552.0 484 60.1
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 1.1e-152 544.3 496 60.9
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 3.3e-152 542.7 559 56.2
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 4.5e-149 532.3 528 56.6
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.3e-145 520.8 499 58.3
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.5e-144 517.3 504 56.9
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.6e-141 506.5 496 59.1
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 9.3e-139 498.0 439 61.7
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.0e-137 494.6 493 55.6
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 6.7e-137 491.9 484 56.4
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 8.7e-137 491.5 464 58.2
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 8.7e-137 491.5 542 54.1
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 8.7e-137 491.5 490 56.3
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 1.9e-136 490.3 492 54.1
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 1.3e-135 487.6 507 52.7
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 8.2e-135 485.0 552 51.3
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.4e-134 483.4 492 52.6
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 1.5e-133 480.7 498 54.0
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 1.0e-132 478.0 503 52.5
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 2.9e-132 476.5 419 62.1
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 2.9e-132 476.5 531 50.7
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 2.9e-132 476.5 499 54.9
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 1.4e-131 474.2 486 53.7
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 3.2e-131 473.0 497 52.7
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 5.5e-131 472.2 500 54.0
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.0e-129 468.0 512 52.3
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 3.0e-129 466.5 510 51.0
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 6.7e-129 465.3 488 53.1
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 6.7e-129 465.3 547 50.8
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 2.0e-128 463.8 504 53.4
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 4.3e-128 462.6 510 50.6
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 5.7e-128 462.2 491 54.8
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.7e-128 462.2 506 52.6
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 1.7e-127 460.7 500 53.6
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 2.2e-127 460.3 493 53.1
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 2.8e-127 459.9 488 53.1
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 4.8e-127 459.1 498 51.6
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 4.1e-126 456.1 426 58.0
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 6.9e-126 455.3 493 52.9
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 6.9e-126 455.3 478 53.6
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 9.1e-126 454.9 532 50.8
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 7.7e-125 451.8 491 51.5
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 2.9e-124 449.9 499 51.5
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 8.5e-124 448.4 484 52.9
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 2.1e-122 443.7 512 53.3
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 2.1e-122 443.7 488 51.4
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.0e-121 441.4 548 49.3
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.4e-121 441.0 485 52.2
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 1.8e-121 440.7 583 47.2
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 6.7e-121 438.7 422 58.1
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.1e-120 438.0 485 51.8
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 2.0e-120 437.2 502 50.8
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 2.8e-119 433.3 534 47.8
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 6.3e-119 432.2 497 50.3
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 8.2e-119 431.8 536 50.9
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 1.4e-118 431.0 514 50.6
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 1.8e-118 430.6 530 50.2
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 4.1e-118 429.5 489 51.1
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 4.5e-117 426.0 435 53.8
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 5.9e-117 425.6 483 50.3
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.7e-117 425.2 485 50.5
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 1.3e-116 424.5 538 47.0
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 1.7e-116 424.1 514 48.6
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 2.9e-116 423.3 547 47.7
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 1.5e-115 421.0 491 48.9
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.1e-114 417.2 538 48.5
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 3.6e-114 416.4 427 52.9
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 1.8e-113 414.1 472 49.6
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 8.8e-113 411.8 482 50.8
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 5.7e-112 409.1 482 48.1
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 4.8e-111 406.0 493 45.6
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 1.4e-110 404.4 405 56.5
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 2.4e-110 403.7 500 48.8
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 2.0e-109 400.6 511 45.4
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 1.5e-107 394.4 462 49.6
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 2.5e-107 393.7 529 45.0
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 4.0e-105 386.3 458 45.6
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 5.2e-105 386.0 485 48.0
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 9.8e-104 381.7 489 44.0
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 1.7e-103 380.9 489 44.0
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 1.7e-103 380.9 489 44.0
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.7e-103 380.9 486 44.0
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 2.2e-103 380.6 496 46.0
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 4.8e-103 379.4 489 44.0
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.6e-101 374.4 487 44.4
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 3.8e-100 369.8 336 58.0
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 3.2e-99 366.7 482 44.4
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 3.2e-99 366.7 374 57.2
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 2.1e-98 364.0 470 46.0
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 2.0e-96 357.5 493 43.2
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 5.7e-96 355.9 452 44.9
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.7e-92 344.4 488 42.8
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 1.5e-91 341.3 475 43.4
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 6.1e-90 335.9 405 50.6
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 6.1e-90 335.9 496 42.5
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 8.9e-89 332.0 497 41.4
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 2.0e-88 330.9 492 41.1
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 2.8e-82 310.5 310 59.0
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 1.3e-79 301.6 325 56.6
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 9.5e-75 285.4 323 54.2
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 3.6e-74 283.5 230 60.4
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.6e-69 268.1 352 47.4
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 8.6e-68 262.3 348 49.7
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.3e-67 260.0 500 35.8
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.0e-60 237.3 171 67.8
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 2.1e-58 231.1 174 62.6
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.8e-58 230.7 293 49.1
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.4e-57 228.4 327 46.2
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 1.1e-49 202.2 148 63.5
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 6.9e-49 199.5 241 43.2
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 6.9e-49 199.5 365 38.9
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 8.4e-47 192.6 341 38.1
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 6.6e-44 183.0 273 38.5
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.6e-37 161.8 303 35.6
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 4.6e-37 160.2 303 35.6
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.3e-36 157.9 229 37.6
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 1.9e-35 154.8 313 31.6
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.4e-32 144.1 87 73.6
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.4e-32 144.1 87 73.6
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 3.4e-32 144.1 213 38.5
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.7e-31 141.7 188 47.3
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 7.1e-30 136.3 274 35.0
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.5e-27 128.6 149 44.3
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 6.3e-26 123.2 338 25.7
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.0e-23 113.6 145 52.4
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 3.2e-22 110.9 485 25.2
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 3.2e-22 110.9 485 25.2
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 3.2e-22 110.9 485 25.2
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-22 110.9 260 29.2
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.2e-22 110.9 101 60.4
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 1.3e-20 105.5 480 26.0
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 1.8e-20 105.1 485 24.1
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 1.8e-20 105.1 485 24.1
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.1e-11 75.9 64 53.1
FAN19G2927 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.9e-06 58.5 76 48.7
FAN26G2475 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.2e-06 56.6 76 47.4


User provided reference genes

Program Settings