Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.3193 Acer truncatum HOM05D037772 ORTHO05D030775 1.8e-149 532.7 301 100.0
Gohir.D12G244300 Gossypium hirsutum HOM05D002142 ORTHO05D001189 8.7e-11 72.0 115 39.1
Gohir.D08G121000 Gossypium hirsutum HOM05D002142 ORTHO05D001189 1.1e-10 71.6 87 49.4
Gorai.004G127800 Gossypium raimondii HOM05D002142 ORTHO05D001189 1.1e-10 71.6 87 49.4
CANSAT01G1306 Cannabis sativa HOM05D002142 ORTHO05D001189 5.6e-10 69.3 90 45.6
TAR365G0293 Trochodendron aralioides HOM05D002142 ORTHO05D001189 7.4e-10 68.9 92 43.5
THA.LOC104806451 Tarenaya hassleriana HOM05D002142 ORTHO05D001189 9.6e-10 68.6 101 41.6
Gorai.008G261900 Gossypium raimondii HOM05D002142 ORTHO05D001189 1.3e-09 68.2 115 38.3
ATR0796G136 Amborella trichopoda HOM05D002142 ORTHO05D001189 2.1e-09 67.4 72 52.8
Aqoxy4G03002 Aquilegia oxysepala HOM05D002142 ORTHO05D001189 3.7e-09 66.6 108 38.9
HanXRQChr03g0083351 Helianthus annuus HOM05D002142 ORTHO05D001189 3.7e-09 66.6 104 43.3
GSVIVG01019716001 Vitis vinifera HOM05D002142 ORTHO05D001189 3.7e-09 66.6 101 42.6
SEGI_13855 Sequoiadendron giganteum HOM05D002142 ORTHO05D001189 8.2e-09 65.5 66 53.0
TWI14G0196 Tripterygium wilfordii HOM05D037772 ORTHO05D030775 8.2e-09 65.5 124 34.7
COL.COLO4_10855 Corchorus olitorius HOM05D002142 ORTHO05D001189 1.1e-08 65.1 96 44.8
Duzib084G0752 Durio zibethinus HOM05D002142 ORTHO05D001189 1.4e-08 64.7 82 47.6
Duzib205G0837 Durio zibethinus HOM05D002142 ORTHO05D001189 1.4e-08 64.7 91 45.1
Gohir.A02G094700 Gossypium hirsutum HOM05D002142 ORTHO05D001189 1.4e-08 64.7 90 47.8
vmacro00882 Vaccinium macrocarpon HOM05D002142 ORTHO05D001189 1.4e-08 64.7 113 40.7
vmacro11473 Vaccinium macrocarpon HOM05D002142 ORTHO05D001189 1.4e-08 64.7 89 44.9
Atru.chr6.1560 Acer truncatum HOM05D002142 ORTHO05D001189 1.8e-08 64.3 79 48.1
Ah.13g070590 Amaranthus hybridus HOM05D002142 ORTHO05D001189 1.8e-08 64.3 92 43.5
arahy.Tifrunner.gnm1.ann1.L5AWWV Arachis hypogaea HOM05D002142 ORTHO05D001189 1.8e-08 64.3 90 45.6
CiPaw.11G107700 Carya illinoinensis HOM05D002142 ORTHO05D001189 1.8e-08 64.3 60 56.7
Dinv08692 Davidia involucrata HOM05D002142 ORTHO05D001189 1.8e-08 64.3 71 52.1
Nn4g25332 Nelumbo nucifera HOM05D002142 ORTHO05D001189 1.8e-08 64.3 92 41.3
Psat6g052800 Pisum sativum HOM05D002142 ORTHO05D001189 1.8e-08 64.3 72 52.8
RcHm_v2.0_Chr7g0187971 Rosa chinensis HOM05D000500 ORTHO05D000367 1.8e-08 64.3 55 61.8
TWI81G0844 Tripterygium wilfordii HOM05D002142 ORTHO05D001189 1.8e-08 64.3 78 48.7
Atru.chr9.1824 Acer truncatum HOM05D002142 ORTHO05D001189 2.4e-08 63.9 79 48.1
Manes.01G000031 Manihot esculenta HOM05D002142 ORTHO05D001189 2.4e-08 63.9 86 45.3
Ciclev10000333m.g Citrus clementina HOM05D002142 ORTHO05D001189 3.1e-08 63.5 72 48.6
Nn4g25267 Nelumbo nucifera HOM05D002142 ORTHO05D001189 3.1e-08 63.5 88 43.2
FAN13G0332 Fragaria x ananassa HOM05D002142 ORTHO05D001189 4.0e-08 63.2 73 50.7
MBI18_g28921_MAGBIO Magnolia biondii HOM05D002142 ORTHO05D001189 4.0e-08 63.2 96 44.8
Rhsim02G0255400 Rhododendron simsii HOM05D002142 ORTHO05D001189 4.0e-08 63.2 72 51.4
Sc13g0007330 Simmondsia chinensis HOM05D002142 ORTHO05D001189 4.0e-08 63.2 71 49.3
Thecc.03G214700 Theobroma cacao HOM05D002142 ORTHO05D001189 4.0e-08 63.2 82 46.3
CSS0017387 Camellia sinensis var. sinensis HOM05D002142 ORTHO05D001189 5.3e-08 62.8 62 53.2
FvH4_5g10290 Fragaria vesca HOM05D002142 ORTHO05D001189 5.3e-08 62.8 83 42.2
Potri.001G453200 Populus trichocarpa HOM05D002142 ORTHO05D001189 5.3e-08 62.8 103 39.8
Sabra11G0134000 Salix brachista HOM05D002142 ORTHO05D001189 5.3e-08 62.8 84 44.0
arahy.Tifrunner.gnm1.ann1.C9MEAE Arachis hypogaea HOM05D002142 ORTHO05D001189 6.9e-08 62.4 61 54.1
Ciclev10018664m.g Citrus clementina HOM05D002142 ORTHO05D001189 6.9e-08 62.4 97 41.2
TWI15G0084 Tripterygium wilfordii HOM05D002142 ORTHO05D001189 6.9e-08 62.4 92 47.8
Aa31LG2G10460 Aethionema arabicum HOM05D002142 ORTHO05D001189 9.0e-08 62.0 129 34.1
arahy.Tifrunner.gnm1.ann1.UKPS8N Arachis hypogaea HOM05D002142 ORTHO05D001189 9.0e-08 62.0 90 44.4
Eucgr.L00343 Eucalyptus grandis HOM05D002142 ORTHO05D001189 9.0e-08 62.0 97 42.3
Lj5g0019010 Lotus japonicus HOM05D002142 ORTHO05D001189 9.0e-08 62.0 78 44.9
SGA_v2.0_scaffold88G27237 Striga asiatica HOM05D002142 ORTHO05D001189 9.0e-08 62.0 74 45.9
Cpa.g.sc37.114 Carica papaya HOM05D002142 ORTHO05D001189 1.2e-07 61.6 70 51.4
Sabra16G0306300 Salix brachista HOM05D002142 ORTHO05D001189 1.2e-07 61.6 103 38.8
Gohir.D03G088800 Gossypium hirsutum HOM05D002142 ORTHO05D001189 1.5e-07 61.2 61 57.4
Gorai.003G072900 Gossypium raimondii HOM05D002142 ORTHO05D001189 1.5e-07 61.2 61 57.4
HanXRQChr16g0531011 Helianthus annuus HOM05D002142 ORTHO05D001189 1.5e-07 61.2 114 32.5
Lj2A149G60 Lonicera japonica HOM05D002142 ORTHO05D001189 1.5e-07 61.2 70 51.4
RcHm_v2.0_Chr7g0187981 Rosa chinensis HOM05D002142 ORTHO05D001189 1.5e-07 61.2 58 56.9
FvH4_5g10280 Fragaria vesca HOM05D000500 ORTHO05D000367 2.0e-07 60.8 58 55.2
FAN18G0358 Fragaria x ananassa HOM05D000500 ORTHO05D000367 2.0e-07 60.8 58 55.2
Lalb_Chr02g0149531 Lupinus albus HOM05D002142 ORTHO05D001189 2.0e-07 60.8 61 52.5
Lalb_Chr06g0168571 Lupinus albus HOM05D002142 ORTHO05D001189 2.0e-07 60.8 61 52.5
QL02p026881 Quercus lobata HOM05D002142 ORTHO05D001189 2.0e-07 60.8 70 50.0
unitig_62.g23266 Utricularia gibba HOM05D002142 ORTHO05D001189 2.0e-07 60.8 78 44.9
Haze_09224 Corylus avellana HOM05D002142 ORTHO05D001189 2.6e-07 60.5 65 50.8
DCAR_023771 Daucus carota HOM05D002142 ORTHO05D001189 2.6e-07 60.5 73 47.9
Migut.E00710 Erythranthe guttata HOM05D002142 ORTHO05D001189 2.6e-07 60.5 92 38.0
FvH4_5g10240 Fragaria vesca HOM05D002142 ORTHO05D001189 2.6e-07 60.5 73 47.9
FAN18G4199 Fragaria x ananassa HOM05D002142 ORTHO05D001189 2.6e-07 60.5 73 47.9
Lsat_1_v5_gn_6_80720 Lactuca sativa HOM05D002142 ORTHO05D001189 2.6e-07 60.5 81 48.1
CDE02G3369 Ceratophyllum demersum HOM05D002142 ORTHO05D001189 3.4e-07 60.1 110 40.9
FAN04G0632 Fragaria x ananassa HOM05D002142 ORTHO05D001189 3.4e-07 60.1 73 47.9
FAN08G3346 Fragaria x ananassa HOM05D002142 ORTHO05D001189 3.4e-07 60.1 74 47.3
PGR042G3539 Punica granatum HOM05D002142 ORTHO05D001189 3.4e-07 60.1 87 47.1
SEGI_09192 Sequoiadendron giganteum HOM05D002142 ORTHO05D001189 3.4e-07 60.1 120 35.0
TPR.G21610 Trifolium pratense HOM05D002142 ORTHO05D001189 3.4e-07 60.1 69 49.3
BcaC05g24895 Brassica carinata HOM05D002142 ORTHO05D001189 4.5e-07 59.7 88 43.2
C08p13660 Brassica napus HOM05D002142 ORTHO05D001189 4.5e-07 59.7 88 43.2
BolC8t49004H Brassica oleracea HOM05D002142 ORTHO05D001189 4.5e-07 59.7 88 43.2
CSS0039797 Camellia sinensis var. sinensis HOM05D002142 ORTHO05D001189 4.5e-07 59.7 62 51.6
Lsat_1_v5_gn_6_80660 Lactuca sativa HOM05D002142 ORTHO05D001189 4.5e-07 59.7 115 37.4
QL02p026914 Quercus lobata HOM05D002142 ORTHO05D001189 4.5e-07 59.7 61 52.5
AT1G10390 Arabidopsis thaliana HOM05D002142 ORTHO05D001189 5.8e-07 59.3 106 35.8
A08p34000 Brassica napus HOM05D002142 ORTHO05D001189 5.8e-07 59.3 88 42.0
BraA08t35313Z Brassica rapa HOM05D002142 ORTHO05D001189 5.8e-07 59.3 88 42.0
BraA09t37433Z Brassica rapa HOM05D002142 ORTHO05D001189 5.8e-07 59.3 71 49.3
Gohir.A12G243300 Gossypium hirsutum HOM05D002142 ORTHO05D001189 5.8e-07 59.3 93 43.0
MD06G1126200 Malus domestica HOM05D002142 ORTHO05D001189 5.8e-07 59.3 85 44.7
Medtr1g078040 Medicago truncatula HOM05D002142 ORTHO05D001189 5.8e-07 59.3 73 43.8
AL1G21160 Arabidopsis lyrata HOM05D002142 ORTHO05D001189 7.6e-07 58.9 79 41.8
CSS0028442 Camellia sinensis var. sinensis HOM05D002142 ORTHO05D001189 7.6e-07 58.9 64 54.7
CSS0042091 Camellia sinensis var. sinensis HOM05D002142 ORTHO05D001189 7.6e-07 58.9 64 54.7
Carub.0001s0983 Capsella rubella HOM05D002142 ORTHO05D001189 7.6e-07 58.9 70 45.7
AUR62006045 Chenopodium quinoa HOM05D002142 ORTHO05D001189 7.6e-07 58.9 61 55.7
AUR62035583 Chenopodium quinoa HOM05D002142 ORTHO05D001189 7.6e-07 58.9 61 55.7
PSO761G0484 Papaver somniferum HOM05D002142 ORTHO05D001189 7.6e-07 58.9 98 38.8
QL02p026896 Quercus lobata HOM05D002142 ORTHO05D001189 7.6e-07 58.9 84 44.0
CARHR010530 Cardamine hirsuta HOM05D002142 ORTHO05D001189 1.0e-06 58.5 77 42.9
BcaB07g31171 Brassica carinata HOM05D002142 ORTHO05D001189 1.3e-06 58.2 72 48.6
Cc08_g17090 Coffea canephora HOM05D002142 ORTHO05D001189 1.3e-06 58.2 77 44.2
Oeu063646.1 Olea europaea HOM05D002142 ORTHO05D001189 1.3e-06 58.2 77 46.8
Potri.011G148800 Populus trichocarpa HOM05D002142 ORTHO05D001189 1.3e-06 58.2 66 47.0
TPR.G21595 Trifolium pratense HOM05D002142 ORTHO05D001189 1.3e-06 58.2 69 46.4
BcaC04g22177 Brassica carinata HOM05D002142 ORTHO05D001189 1.7e-06 57.8 72 47.2
C09p22420 Brassica napus HOM05D001066 ORTHO05D000891 1.7e-06 57.8 72 47.2
BolC9t55160H Brassica oleracea HOM05D002142 ORTHO05D001189 1.7e-06 57.8 72 47.2
CBR_g19847 Chara braunii HOM05D002142 ORTHO05D001189 1.7e-06 57.8 75 46.7
Dinv30959 Davidia involucrata HOM05D002142 ORTHO05D001189 1.7e-06 57.8 62 46.8
Solyc04g007280.3 Solanum lycopersicum HOM05D002142 ORTHO05D001189 1.7e-06 57.8 94 39.4
Sopen04g002340 Solanum pennellii HOM05D002142 ORTHO05D001189 1.7e-06 57.8 94 39.4
BcaC05g24923 Brassica carinata HOM05D002142 ORTHO05D001189 2.2e-06 57.4 88 42.0
ClCG09G016660 Citrullus lanatus HOM05D002142 ORTHO05D001189 2.2e-06 57.4 67 50.7
MELO3C024716.2 Cucumis melo HOM05D002142 ORTHO05D001189 2.2e-06 57.4 87 44.8
Prupe.5G135900 Prunus persica HOM05D002142 ORTHO05D001189 2.2e-06 57.4 57 52.6
Hund10364 Selenicereus undatus HOM05D002142 ORTHO05D001189 2.2e-06 57.4 70 47.1
TWI53G1088 Tripterygium wilfordii HOM05D037772 ORTHO05D030775 2.2e-06 57.4 126 34.9
Aqoxy1G00933 Aquilegia oxysepala HOM05D002142 ORTHO05D001189 2.9e-06 57.0 129 33.3
Thhalv10006652m.g Eutrema salsugineum HOM05D002142 ORTHO05D001189 2.9e-06 57.0 71 47.9
Phvul.005G075600 Phaseolus vulgaris HOM05D002142 ORTHO05D001189 2.9e-06 57.0 70 51.4
RcHm_v2.0_Chr7g0187941 Rosa chinensis HOM05D002142 ORTHO05D001189 2.9e-06 57.0 62 50.0
SHI06884 Sapria himalayana HOM05D002142 ORTHO05D001189 2.9e-06 57.0 62 46.8
Sed0009239 Sechium edule HOM05D002142 ORTHO05D001189 2.9e-06 57.0 61 54.1
Actinidia22237 Actinidia chinensis HOM05D002142 ORTHO05D001189 3.8e-06 56.6 66 51.5
AagrBONN_evm.TU.Sc2ySwM_340.72 Anthoceros agrestis HOM05D003914 ORTHO05D001189 3.8e-06 56.6 103 35.9
C03p42370 Brassica napus HOM05D002142 ORTHO05D001189 3.8e-06 56.6 84 41.7
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 3.8e-06 56.6 71 46.5
Glyma.12G235000 Glycine max HOM05D002142 ORTHO05D001189 3.8e-06 56.6 62 53.2
Glyma.13G264100 Glycine max HOM05D002142 ORTHO05D001189 3.8e-06 56.6 62 53.2
MD14G1142000 Malus domestica HOM05D002142 ORTHO05D001189 3.8e-06 56.6 76 48.7
Prupe.5G136300 Prunus persica HOM05D002142 ORTHO05D001189 3.8e-06 56.6 75 49.3
VMungo1080G1137 Vigna mungo HOM05D002142 ORTHO05D001189 3.8e-06 56.6 70 51.4
CsaV3_2G036160 Cucumis sativus L. HOM05D002142 ORTHO05D001189 4.9e-06 56.2 67 50.7
FAN04G0720 Fragaria x ananassa HOM05D000500 ORTHO05D000367 4.9e-06 56.2 58 51.7
Oeu020470.1 Olea europaea HOM05D002142 ORTHO05D001189 4.9e-06 56.2 63 52.4
Os12g0166000 Oryza sativa ssp. japonica HOM05D002142 ORTHO05D001189 4.9e-06 56.2 78 42.3
PSO210G2933 Papaver somniferum HOM05D002142 ORTHO05D001189 4.9e-06 56.2 69 46.4
Sed0006864 Sechium edule HOM05D002142 ORTHO05D001189 4.9e-06 56.2 61 49.2
BcaC05g24892 Brassica carinata HOM05D002142 ORTHO05D001189 6.5e-06 55.8 71 45.1
Gohir.D11G017500 Gossypium hirsutum HOM05D002142 ORTHO05D001189 6.5e-06 55.8 79 45.6
Gorai.007G018500 Gossypium raimondii HOM05D002142 ORTHO05D001189 6.5e-06 55.8 79 45.6
MBI18_g03861_MAGBIO Magnolia biondii HOM05D002142 ORTHO05D001189 6.5e-06 55.8 67 47.8
MD06G1126300 Malus domestica HOM05D002142 ORTHO05D001189 6.5e-06 55.8 63 52.4
Ah.07g205000 Amaranthus hybridus HOM05D002142 ORTHO05D001189 8.4e-06 55.5 64 50.0
A09p18020 Brassica napus HOM05D001066 ORTHO05D000891 8.4e-06 55.5 60 48.3


User provided reference genes

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