Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 1.0e-218 763.1 379 100.0
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 4.4e-185 651.4 358 89.1
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 2.0e-182 642.5 354 87.9
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 1.3e-181 639.8 358 87.7
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 1.1e-180 636.7 349 88.5
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 3.2e-180 635.2 358 87.4
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 2.8e-179 632.1 360 87.5
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 4.7e-179 631.3 358 87.2
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 8.0e-179 630.6 358 86.0
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 1.0e-178 630.2 358 86.3
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 1.8e-178 629.4 358 86.3
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 5.2e-178 627.9 353 85.6
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 5.2e-178 627.9 358 86.3
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 8.8e-178 627.1 358 86.0
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 8.8e-178 627.1 358 86.6
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.2e-177 626.7 358 86.0
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 7.5e-177 624.0 358 85.2
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 7.5e-177 624.0 358 85.2
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 9.8e-177 623.6 358 85.8
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 9.8e-177 623.6 358 85.2
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 9.8e-177 623.6 358 85.8
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 9.8e-177 623.6 358 84.9
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 2.2e-176 622.5 358 85.8
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 2.8e-176 622.1 358 84.6
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 8.3e-176 620.5 359 84.7
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 8.3e-176 620.5 359 84.7
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.1e-175 620.2 358 84.6
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 1.1e-175 620.2 358 85.5
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 4.1e-175 618.2 377 81.4
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 5.4e-175 617.8 359 85.0
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 5.4e-175 617.8 358 84.6
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.6e-174 616.3 359 84.7
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 1.6e-174 616.3 358 85.5
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 2.0e-174 615.9 359 85.8
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 2.7e-174 615.5 358 84.9
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 4.5e-174 614.8 358 85.2
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 7.8e-174 614.0 349 86.0
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 1.3e-173 613.2 359 84.1
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.3e-173 613.2 359 84.1
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 5.0e-173 611.3 360 83.6
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 5.0e-173 611.3 353 85.3
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 6.6e-173 610.9 358 83.0
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 8.6e-173 610.5 397 78.1
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 1.1e-172 610.1 359 83.0
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 1.9e-172 609.4 358 84.1
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 3.3e-172 608.6 360 83.6
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 3.3e-172 608.6 358 84.1
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 3.3e-172 608.6 359 82.7
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 5.6e-172 607.8 358 82.7
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 5.6e-172 607.8 358 82.7
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 5.6e-172 607.8 358 84.4
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 9.5e-172 607.1 359 82.7
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 1.2e-171 606.7 355 83.7
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 1.6e-171 606.3 358 83.8
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 2.1e-171 605.9 359 83.3
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 2.8e-171 605.5 359 83.8
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 4.7e-171 604.7 359 82.5
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 6.1e-171 604.4 359 83.6
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 8.0e-171 604.0 359 82.5
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 1.0e-170 603.6 359 83.6
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 1.8e-170 602.8 359 82.5
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 3.0e-170 602.1 358 83.0
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 4.0e-170 601.7 359 83.3
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 4.0e-170 601.7 358 83.2
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 2.0e-169 599.4 361 83.9
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 2.0e-169 599.4 360 81.4
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 2.0e-169 599.4 361 82.3
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 2.6e-169 599.0 360 82.5
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 5.7e-169 597.8 340 85.3
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 5.7e-169 597.8 359 81.1
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 5.7e-169 597.8 353 83.3
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 7.5e-169 597.4 360 83.1
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 9.8e-169 597.0 349 83.7
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 9.8e-169 597.0 359 81.9
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 9.8e-169 597.0 361 82.0
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 1.3e-168 596.7 361 82.0
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 2.2e-168 595.9 360 81.1
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 2.9e-168 595.5 360 81.7
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 4.9e-168 594.7 358 82.1
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 4.9e-168 594.7 360 81.9
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 1.1e-167 593.6 360 81.9
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 1.4e-167 593.2 349 83.1
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 1.4e-167 593.2 349 83.1
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 1.4e-167 593.2 349 83.1
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 1.4e-167 593.2 349 83.1
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 1.4e-167 593.2 349 83.1
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.8e-167 592.8 358 81.3
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.8e-167 592.8 358 82.1
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 4.1e-167 591.7 353 81.6
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 7.0e-167 590.9 358 82.1
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 7.0e-167 590.9 353 83.3
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 9.2e-167 590.5 349 83.4
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 1.2e-166 590.1 358 83.5
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 1.2e-166 590.1 353 81.9
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 1.6e-166 589.7 377 78.0
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 1.3e-165 586.6 359 81.3
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 6.6e-165 584.3 361 81.4
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 1.1e-164 583.6 359 79.1
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 9.5e-164 580.5 361 80.9
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 4.7e-163 578.2 372 79.3
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 8.0e-163 577.4 358 79.3
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.4e-162 576.6 359 80.5
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.8e-162 576.2 362 79.0
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 2.3e-162 575.9 358 79.6
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.3e-162 575.9 361 80.9
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 3.4e-161 572.0 350 80.9
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 2.9e-160 568.9 361 78.7
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 2.9e-160 568.9 360 80.3
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 2.9e-160 568.9 360 79.4
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 3.7e-160 568.5 358 76.5
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 6.4e-160 567.8 360 77.5
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 2.0e-158 562.8 350 80.0
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 3.0e-157 558.9 353 79.0
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 3.3e-156 555.4 359 78.0
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 4.3e-156 555.1 353 77.9
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 2.1e-155 552.7 358 75.1
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 2.8e-155 552.4 358 75.1
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 1.8e-154 549.7 358 77.1
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 1.8e-154 549.7 359 77.2
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 5.2e-154 548.1 424 68.4
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 6.8e-154 547.7 349 77.9
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 1.2e-153 547.0 358 79.3
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 5.8e-153 544.7 358 76.0
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 9.9e-153 543.9 355 78.0
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 1.3e-152 543.5 356 77.2
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 2.2e-152 542.7 358 75.7
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 2.2e-152 542.7 375 74.7
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 3.7e-152 542.0 359 76.3
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 6.4e-152 541.2 359 76.3
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 1.9e-151 539.7 362 76.5
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 1.9e-148 529.6 359 74.9
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 2.5e-148 529.3 353 74.5
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 4.3e-148 528.5 357 73.7
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 4.7e-147 525.0 353 73.1
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 5.2e-146 521.5 353 72.8
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 4.1e-143 511.9 360 69.7
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 7.1e-143 511.1 353 72.2
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 2.6e-137 492.7 358 65.4
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 5.8e-137 491.5 383 68.9
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 7.1e-135 484.6 359 66.3
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 2.7e-134 482.6 358 65.6
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 7.8e-134 481.1 358 64.8
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 1.7e-133 479.9 278 84.2
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 3.0e-133 479.2 280 84.6
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 3.0e-133 479.2 279 83.2
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 8.7e-133 477.6 362 63.8
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 6.2e-131 471.5 366 67.8
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 1.2e-129 467.2 360 64.7
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.2e-129 467.2 280 80.7
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 2.2e-128 463.0 280 81.8
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 6.4e-128 461.5 352 64.5
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 8.4e-128 461.1 345 70.7
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 4.6e-126 455.3 272 81.6
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 5.1e-125 451.8 266 83.5
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 3.3e-124 449.1 279 81.4
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 1.4e-122 443.7 359 61.3
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 4.5e-121 438.7 254 84.3
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 5.5e-119 431.8 347 63.7
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 5.6e-116 421.8 316 69.0
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 1.4e-114 417.2 273 74.4
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 1.2e-113 414.1 275 73.1
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 1.9e-111 406.8 374 54.3
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 4.2e-111 405.6 361 56.0
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 4.6e-110 402.1 264 77.3
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 1.4e-106 390.6 391 52.4
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 4.3e-100 369.0 359 52.4
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 9.7e-92 341.3 197 84.8
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 7.2e-87 325.1 197 78.7
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 2.6e-81 306.6 253 63.2
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 2.2e-80 303.5 211 72.0
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 2.3e-77 293.5 168 85.7
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 5.5e-71 272.3 170 81.2
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 1.9e-50 204.1 205 57.6
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 5.6e-47 192.6 365 32.1
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 1.5e-44 184.5 113 80.5
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 1.6e-41 174.5 424 28.8
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 1.7e-40 171.0 119 68.1
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 3.9e-40 169.9 147 61.2
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 4.3e-39 166.4 119 66.4
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 2.3e-37 160.6 371 26.7
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 1.3e-35 154.8 115 65.2
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 1.0e-32 145.2 290 31.0
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 2.0e-28 131.0 83 74.7
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 4.2e-10 70.1 49 71.4
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 1.8e-08 64.7 198 29.8


User provided reference genes

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