Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.3069 Acer truncatum HOM05D006827 ORTHO05D008725 2.3e-94 349.0 190 100.0
Duzib212G0426 Durio zibethinus HOM05D006827 ORTHO05D008725 6.6e-57 224.6 197 65.5
Thecc.04G305900 Theobroma cacao HOM05D006827 ORTHO05D008725 3.3e-56 222.2 197 62.9
Ciclev10005460m.g Citrus clementina HOM05D006827 ORTHO05D008725 1.6e-55 219.9 193 69.9
COL.COLO4_34569 Corchorus olitorius HOM05D001281 ORTHO05D001139 2.1e-55 219.5 195 61.0
Gorai.011G202600 Gossypium raimondii HOM05D006827 ORTHO05D008725 4.8e-55 218.4 197 61.9
GSVIVG01034952001 Vitis vinifera HOM05D006827 ORTHO05D008725 1.8e-54 216.5 172 66.9
Potri.008G101900 Populus trichocarpa HOM05D006827 ORTHO05D008725 3.1e-54 215.7 154 75.3
Gohir.A10G174600 Gossypium hirsutum HOM05D006827 ORTHO05D008725 4.0e-54 215.3 197 60.9
Gohir.D10G181100 Gossypium hirsutum HOM05D006827 ORTHO05D008725 6.9e-54 214.5 197 61.4
ClCG06G004410 Citrullus lanatus HOM05D006827 ORTHO05D008725 9.9e-53 210.7 157 72.0
Manes.03G207700 Manihot esculenta HOM05D006827 ORTHO05D008725 1.3e-52 210.3 126 81.7
CsaV3_UNG230110 Cucumis sativus L. HOM05D006827 ORTHO05D008725 8.4e-52 207.6 157 70.7
QL06p013028 Quercus lobata HOM05D006827 ORTHO05D008725 1.1e-51 207.2 176 65.3
TWI09G0591 Tripterygium wilfordii HOM05D006827 ORTHO05D008725 1.1e-51 207.2 126 83.3
Eucgr.B03980 Eucalyptus grandis HOM05D006827 ORTHO05D008725 9.3e-51 204.1 131 74.8
CiPaw.01G134600 Carya illinoinensis HOM05D006827 ORTHO05D008725 1.2e-50 203.8 176 66.5
TWI53G1816 Tripterygium wilfordii HOM05D006827 ORTHO05D008725 2.1e-50 203.0 129 77.5
Dinv15137 Davidia involucrata HOM05D006827 ORTHO05D008725 3.5e-50 202.2 126 79.4
Sed0009970 Sechium edule HOM05D006827 ORTHO05D008725 3.5e-50 202.2 126 77.8
Nn3g21791 Nelumbo nucifera HOM05D006827 ORTHO05D008725 6.0e-50 201.4 167 61.7
MELO3C021255.2 Cucumis melo HOM05D006827 ORTHO05D008725 7.9e-50 201.1 175 65.7
TAR365G1248 Trochodendron aralioides HOM05D006827 ORTHO05D008725 1.0e-49 200.7 215 56.3
DCAR_023373 Daucus carota HOM05D006827 ORTHO05D008725 5.1e-49 198.4 129 77.5
PGSC0003DMG400015968 Solanum tuberosum HOM05D006827 ORTHO05D008725 5.1e-49 198.4 199 57.3
AL3G30170 Arabidopsis lyrata HOM05D006827 ORTHO05D008725 6.6e-49 198.0 118 77.1
Carub.0003s1692 Capsella rubella HOM05D006827 ORTHO05D008725 1.1e-48 197.2 118 77.1
Nitab4.5_0002421g0010 Nicotiana tabacum HOM05D006827 ORTHO05D008725 1.1e-48 197.2 126 77.0
Aa31LG8G4170 Aethionema arabicum HOM05D006827 ORTHO05D008725 1.5e-48 196.8 134 73.1
Cfa015277 Carpinus fangiana HOM05D006827 ORTHO05D008725 1.5e-48 196.8 133 75.2
Peaxi162Scf00228g00735 Petunia axillaris HOM05D006827 ORTHO05D008725 1.5e-48 196.8 198 62.1
PGR031G1277 Punica granatum HOM05D006827 ORTHO05D008725 1.5e-48 196.8 126 76.2
Thhalv10021204m.g Eutrema salsugineum HOM05D006827 ORTHO05D008725 1.9e-48 196.4 118 76.3
CARHR092440 Cardamine hirsuta HOM05D006827 ORTHO05D008725 2.5e-48 196.1 118 74.6
AT3G17170 Arabidopsis thaliana HOM05D006827 ORTHO05D008725 3.3e-48 195.7 118 75.4
CANSAT78G0077 Cannabis sativa HOM05D006827 ORTHO05D008725 3.3e-48 195.7 127 74.8
PSO210G0119 Papaver somniferum HOM05D006827 ORTHO05D008725 3.3e-48 195.7 126 75.4
Rhsim04G0242100 Rhododendron simsii HOM05D006827 ORTHO05D008725 3.3e-48 195.7 154 66.2
Sp3g15370 Schrenkiella parvula HOM05D006827 ORTHO05D008725 3.3e-48 195.7 118 78.0
Sopen01g023660 Solanum pennellii HOM05D006827 ORTHO05D008725 3.3e-48 195.7 201 55.7
Nitab4.5_0004047g0010 Nicotiana tabacum HOM05D006827 ORTHO05D008725 4.3e-48 195.3 126 75.4
Oeu014225.1 Olea europaea HOM05D006827 ORTHO05D008725 4.3e-48 195.3 126 75.4
PSO761G0463 Papaver somniferum HOM05D006827 ORTHO05D008725 4.3e-48 195.3 126 75.4
Solyc01g058190.4 Solanum lycopersicum HOM05D006827 ORTHO05D008725 5.6e-48 194.9 201 55.7
MBI18_g27379_MAGBIO Magnolia biondii HOM05D006827 ORTHO05D008725 9.6e-48 194.1 129 72.9
Sabra08G0077100 Salix brachista HOM05D006827 ORTHO05D007631 1.3e-47 193.7 142 70.4
unitig_88.g27700 Utricularia gibba HOM05D006827 ORTHO05D008725 1.6e-47 193.4 129 71.3
A01p37130 Brassica napus HOM05D006827 ORTHO05D008725 2.1e-47 193.0 118 77.1
BraA01t03774Z Brassica rapa HOM05D006827 ORTHO05D008725 2.1e-47 193.0 118 77.1
Prupe.1G113000 Prunus persica HOM05D006827 ORTHO05D008725 2.1e-47 193.0 176 64.8
THA.LOC104820318 Tarenaya hassleriana HOM05D006827 ORTHO05D008725 2.1e-47 193.0 129 72.9
BcaC09g48673 Brassica carinata HOM05D006827 ORTHO05D008725 2.8e-47 192.6 118 77.1
BcaC09g48674 Brassica carinata HOM05D006827 ORTHO05D008725 2.8e-47 192.6 118 77.1
C01p47070 Brassica napus HOM05D006827 ORTHO05D008725 2.8e-47 192.6 118 77.1
BolC1t04673H Brassica oleracea HOM05D006827 ORTHO05D008725 2.8e-47 192.6 118 77.1
BcaB04g20857 Brassica carinata HOM05D006827 ORTHO05D008725 1.1e-46 190.7 118 76.3
vmacro07963 Vaccinium macrocarpon HOM05D006827 ORTHO05D008725 1.1e-46 190.7 187 52.4
CAN.G281.10 Capsicum annuum HOM05D006827 ORTHO05D008725 1.8e-46 189.9 126 74.6
RcHm_v2.0_Chr4g0426061 Rosa chinensis HOM05D006827 ORTHO05D008725 1.8e-46 189.9 156 68.6
Actinidia31567 Actinidia chinensis HOM05D006827 ORTHO05D008725 3.1e-46 189.1 129 70.5
Migut.N00027 Erythranthe guttata HOM05D006827 ORTHO05D008725 3.1e-46 189.1 129 70.5
MD13G1149000 Malus domestica HOM05D006827 ORTHO05D008725 3.1e-46 189.1 126 71.4
Aqoxy2G02656 Aquilegia oxysepala HOM05D006827 ORTHO05D008725 6.9e-46 188.0 129 71.3
arahy.Tifrunner.gnm1.ann1.7T6EZL Arachis hypogaea HOM05D006827 ORTHO05D008725 9.0e-46 187.6 119 73.1
arahy.Tifrunner.gnm1.ann1.W8AIPN Arachis hypogaea HOM05D006827 ORTHO05D008725 9.0e-46 187.6 119 73.1
HanXRQChr05g0148611 Helianthus annuus HOM05D006827 ORTHO05D008725 9.0e-46 187.6 204 57.4
EL10Ac3g05552 Beta vulgaris HOM05D006827 ORTHO05D008725 1.2e-45 187.2 170 56.5
AUR62016245 Chenopodium quinoa HOM05D002153 ORTHO05D002137 1.5e-45 186.8 134 67.9
CsaV3_6G028440 Cucumis sativus L. HOM05D006827 ORTHO05D008725 1.5e-45 186.8 206 54.4
Hma1.2p1_0516F.1_g170510 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 2.6e-45 186.0 129 72.9
QL03p023650 Quercus lobata HOM05D006827 ORTHO05D008725 2.6e-45 186.0 220 52.3
MSTRG.3845 Avicennia marina HOM05D006827 ORTHO05D008725 3.4e-45 185.7 118 75.4
Cc03_g00540 Coffea canephora HOM05D006827 ORTHO05D008725 4.5e-45 185.3 118 74.6
FvH4_4g20660 Fragaria vesca HOM05D006827 ORTHO05D008725 4.5e-45 185.3 129 67.4
FAN12G3056 Fragaria x ananassa HOM05D006827 ORTHO05D008725 4.5e-45 185.3 129 67.4
Medtr2g033490 Medicago truncatula HOM05D006827 ORTHO05D008725 5.8e-45 184.9 167 55.7
Ah.13g071520 Amaranthus hybridus HOM05D006827 ORTHO05D008725 7.6e-45 184.5 134 67.2
Sc25g0003190 Simmondsia chinensis HOM05D006827 ORTHO05D008725 1.7e-44 183.3 118 72.0
Glyma.15G137900 Glycine max HOM05D006827 ORTHO05D008725 2.2e-44 183.0 175 55.4
ECA246G4663 Erigeron canadensis HOM05D002153 ORTHO05D002137 2.9e-44 182.6 129 69.8
Glyma.09G032900 Glycine max HOM05D001281 ORTHO05D008725 2.9e-44 182.6 175 54.9
Lsat_1_v5_gn_6_116121 Lactuca sativa HOM05D006827 ORTHO05D008725 6.4e-44 181.4 204 52.9
Hund11994 Selenicereus undatus HOM05D006827 ORTHO05D008725 6.4e-44 181.4 118 72.0
SGA_v2.0_scaffold227G43227 Striga asiatica HOM05D006827 ORTHO05D008725 6.4e-44 181.4 118 74.6
ATR1120G107 Amborella trichopoda HOM05D006827 ORTHO05D008725 1.4e-43 180.3 155 59.4
HPP92_027958 Vanilla planifolia HOM05D006827 ORTHO05D008725 1.9e-43 179.9 131 65.6
Haze_01351 Corylus avellana HOM05D002153 ORTHO05D002137 3.2e-43 179.1 180 57.8
Ca_00959_v3 Cicer arietinum L. HOM05D006827 ORTHO05D008725 4.2e-43 178.7 126 66.7
Lj3A834T69 Lonicera japonica HOM05D006827 ORTHO05D008725 5.5e-43 178.3 129 69.8
Os12g0563200 Oryza sativa ssp. japonica HOM05D006827 ORTHO05D008725 7.1e-43 177.9 134 65.7
Lalb_Chr18g0058551 Lupinus albus HOM05D006827 ORTHO05D008725 9.3e-43 177.6 126 65.9
TPR.G33906 Trifolium pratense HOM05D006827 ORTHO05D008725 1.2e-42 177.2 158 57.0
Zm00001eb136900 Zea mays HOM05D006827 ORTHO05D008725 1.2e-42 177.2 134 64.9
Psat1g161800 Pisum sativum HOM05D006827 ORTHO05D008725 1.6e-42 176.8 133 63.2
FAN07G0118 Fragaria x ananassa HOM05D006827 ORTHO05D008725 2.7e-42 176.0 135 63.0
Lj6g0001147 Lotus japonicus HOM05D001281 ORTHO05D001139 2.7e-42 176.0 156 57.1
Phvul.006G120200 Phaseolus vulgaris HOM05D006827 ORTHO05D008725 6.0e-42 174.9 126 62.7
VMungo0540G1290 Vigna mungo HOM05D006827 ORTHO05D008725 6.0e-42 174.9 158 55.1
arahy.Tifrunner.gnm1.ann1.GV6LK0 Arachis hypogaea HOM05D006827 ORTHO05D008725 1.5e-40 170.2 119 68.1
MD16G1149200 Malus domestica HOM05D006827 ORTHO05D008725 2.0e-37 159.8 104 72.1
CAN.G582.1 Capsicum annuum HOM05D006827 ORTHO05D008725 2.5e-35 152.9 126 64.3
Hma1.2p1_0013F.1_g008250 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 2.7e-26 122.9 72 80.6
Cpa.g.sc9.7 Carica papaya HOM05D001281 ORTHO05D008725 1.8e-25 120.2 174 48.9
Mapoly0005s0049 Marchantia polymorpha HOM05D006827 ORTHO05D008725 5.7e-24 115.2 112 49.1
Pp3c14_11410 Physcomitrium patens HOM05D006827 ORTHO05D008725 2.2e-23 113.2 111 46.8
Pp3c14_11414 Physcomitrium patens HOM05D006827 ORTHO05D008725 2.2e-23 113.2 111 46.8
AUR62032776 Chenopodium quinoa HOM05D006827 ORTHO05D008725 6.9e-22 108.2 88 63.6
arahy.Tifrunner.gnm1.ann1.25F6GK Arachis hypogaea HOM05D006827 ORTHO05D008725 2.7e-18 96.3 113 50.4
SEGI_22692 Sequoiadendron giganteum HOM05D006827 ORTHO05D008725 1.8e-17 93.6 66 65.2
CBR_g38487 Chara braunii HOM05D006827 ORTHO05D008725 5.1e-17 92.0 98 46.9
SMO351G0308 Selaginella moellendorffii HOM05D006827 ORTHO05D008725 1.5e-16 90.5 72 52.8
BcaC05g28821 Brassica carinata HOM05D006827 ORTHO05D023991 4.8e-15 85.5 82 56.1
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 5.0e-12 75.5 113 42.5
Hma1.2p1_0013F.1_g008240 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 5.1e-09 65.5 56 60.7
C05p49280 Brassica napus HOM05D006827 ORTHO05D008725 6.7e-09 65.1 72 51.4
A05p32600 Brassica napus HOM05D006827 ORTHO05D008725 2.8e-07 59.7 50 54.0
BraA05t22084Z Brassica rapa HOM05D006827 ORTHO05D008725 2.8e-07 59.7 50 54.0
PRCOL_00004690 Prasinoderma coloniale HOM05D006827 ORTHO05D008725 1.4e-06 57.4 67 43.3
Psat4g040600 Pisum sativum HOM05D006827 ORTHO05D008725 1.8e-06 57.0 45 55.6


User provided reference genes

Program Settings