Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2832 Acer truncatum HOM05D007625 ORTHO05D009738 4.5e-149 531.2 259 100.0
Ciclev10005679m.g Citrus clementina HOM05D007625 ORTHO05D009738 4.5e-125 451.4 259 83.0
TWI09G0101 Tripterygium wilfordii HOM05D007625 ORTHO05D009738 1.1e-113 413.7 251 77.3
RcHm_v2.0_Chr4g0422131 Rosa chinensis HOM05D007625 ORTHO05D009738 1.3e-111 406.8 251 75.3
FAN07G2640 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.7e-111 406.4 250 76.0
Thecc.04G284200 Theobroma cacao HOM05D007625 ORTHO05D009738 1.7e-111 406.4 253 74.7
Duzib212G0442 Durio zibethinus HOM05D007625 ORTHO05D009738 3.7e-111 405.2 253 74.3
GSVIVG01017755001 Vitis vinifera HOM05D007625 ORTHO05D009738 8.3e-111 404.1 244 77.5
CANSAT78G1499 Cannabis sativa HOM05D007625 ORTHO05D009738 3.2e-110 402.1 257 75.1
TAR633G2367 Trochodendron aralioides HOM05D007625 ORTHO05D009738 4.1e-110 401.7 256 74.6
FvH4_4g17960 Fragaria vesca HOM05D007625 ORTHO05D009738 7.0e-110 401.0 250 74.8
Gohir.A09G239300 Gossypium hirsutum HOM05D007625 ORTHO05D009738 9.2e-110 400.6 253 73.5
Actinidia00027 Actinidia chinensis HOM05D007625 ORTHO05D009738 2.1e-109 399.4 257 73.9
Manes.03G194700 Manihot esculenta HOM05D007625 ORTHO05D009738 4.6e-109 398.3 261 75.1
QL06p008815 Quercus lobata HOM05D007625 ORTHO05D009738 1.7e-108 396.4 256 73.4
Sabra10G0014200 Salix brachista HOM05D007625 ORTHO05D009738 3.9e-108 395.2 258 75.6
CSS0007271 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 5.1e-108 394.8 254 73.2
Prupe.1G137400 Prunus persica HOM05D007625 ORTHO05D009738 5.1e-108 394.8 253 74.7
PGR031G0588 Punica granatum HOM05D007625 ORTHO05D009738 1.5e-107 393.3 251 73.7
Gohir.D09G240200 Gossypium hirsutum HOM05D007625 ORTHO05D009738 7.3e-107 391.0 255 72.2
Lj4g0027770 Lotus japonicus HOM05D007625 ORTHO05D009738 9.5e-107 390.6 256 70.7
Medtr4g119840 Medicago truncatula HOM05D007625 ORTHO05D009738 2.8e-106 389.0 259 69.5
Sp3g14890 Schrenkiella parvula HOM05D007625 ORTHO05D009738 4.7e-106 388.3 256 73.0
BcaB06g25757 Brassica carinata HOM05D007625 ORTHO05D009738 8.1e-106 387.5 256 72.3
MD13G1169000 Malus domestica HOM05D007625 ORTHO05D009738 1.8e-105 386.3 258 71.7
Thhalv10021369m.g Eutrema salsugineum HOM05D007625 ORTHO05D009738 6.8e-105 384.4 256 72.3
VMungo1215G1867 Vigna mungo HOM05D007625 ORTHO05D009738 1.2e-104 383.6 259 69.1
Lalb_Chr13g0303611 Lupinus albus HOM05D007625 ORTHO05D009738 3.4e-104 382.1 252 69.8
CARHR091770 Cardamine hirsuta HOM05D007625 ORTHO05D009738 1.3e-103 380.2 256 71.9
FAN12G1696 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.3e-103 380.2 245 72.7
Phvul.003G105100 Phaseolus vulgaris HOM05D007625 ORTHO05D009738 2.2e-103 379.4 260 67.7
Psat4g025880 Pisum sativum HOM05D007625 ORTHO05D009738 2.2e-103 379.4 256 69.1
Ca_21505_v3 Cicer arietinum L. HOM05D007625 ORTHO05D009738 2.9e-103 379.0 259 68.0
FAN12G4294 Fragaria x ananassa HOM05D007625 ORTHO05D009738 2.9e-103 379.0 242 73.6
AL3G29430 Arabidopsis lyrata HOM05D007625 ORTHO05D009738 4.9e-103 378.3 256 70.3
arahy.Tifrunner.gnm1.ann1.QKB3E6 Arachis hypogaea HOM05D007625 ORTHO05D009738 6.4e-103 377.9 267 67.8
Glyma.07G247900 Glycine max HOM05D007625 ORTHO05D009738 8.3e-103 377.5 257 68.5
arahy.Tifrunner.gnm1.ann1.96EVWK Arachis hypogaea HOM05D007625 ORTHO05D009738 1.4e-102 376.7 265 67.5
BraA05t22123Z Brassica rapa HOM05D007625 ORTHO05D009738 5.4e-102 374.8 273 67.4
FAN17G2144 Fragaria x ananassa HOM05D007625 ORTHO05D009738 5.4e-102 374.8 276 66.7
TPR.G3171 Trifolium pratense HOM05D007625 ORTHO05D009738 7.1e-102 374.4 254 69.7
Rhsim02G0009500 Rhododendron simsii HOM05D007625 ORTHO05D009738 1.6e-101 373.2 255 69.4
Potri.010G024900 Populus trichocarpa HOM05D007625 ORTHO05D009738 2.1e-101 372.9 246 74.0
BolC5t33727H Brassica oleracea HOM05D007625 ORTHO05D009738 4.6e-101 371.7 273 66.3
MBI18_g04687_MAGBIO Magnolia biondii HOM05D007625 ORTHO05D009738 4.6e-101 371.7 252 69.4
C05p49750 Brassica napus HOM05D007625 ORTHO05D009738 7.8e-101 370.9 267 68.5
Lsat_1_v5_gn_5_53001 Lactuca sativa HOM05D007625 ORTHO05D009738 1.3e-100 370.2 250 72.8
CSS0032939 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 5.1e-100 368.2 273 65.9
Gorai.006G263200 Gossypium raimondii HOM05D007625 ORTHO05D009738 8.6e-100 367.5 234 72.2
Aqoxy2G02997 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 1.9e-99 366.3 255 67.1
SGA_v2.0_scaffold428G51521 Striga asiatica HOM05D007625 ORTHO05D009738 2.5e-99 365.9 253 68.4
PSO017G7039 Papaver somniferum HOM05D007625 ORTHO05D009738 1.2e-98 363.6 248 69.4
Dinv44384 Davidia involucrata HOM05D007625 ORTHO05D005073 1.6e-98 363.2 253 70.4
AT3G16565 Arabidopsis thaliana HOM05D007625 ORTHO05D009738 2.8e-98 362.5 289 63.0
Hund20557 Selenicereus undatus HOM05D007625 ORTHO05D009738 8.9e-97 357.5 256 68.4
ECA240G3588 Erigeron canadensis HOM05D007625 ORTHO05D009738 1.5e-96 356.7 248 69.8
BcaNung06438 Brassica carinata HOM05D007625 ORTHO05D009738 2.0e-96 356.3 230 73.0
HanXRQChr03g0080751 Helianthus annuus HOM05D007625 ORTHO05D009738 3.4e-96 355.5 257 67.3
Cc03_g01990 Coffea canephora HOM05D007625 ORTHO05D009738 4.4e-96 355.1 240 70.8
Eucgr.B01310 Eucalyptus grandis HOM05D007625 ORTHO05D009738 4.4e-96 355.1 239 72.4
DCAR_027078 Daucus carota HOM05D007625 ORTHO05D009738 9.9e-96 354.0 257 67.7
Migut.N00092 Erythranthe guttata HOM05D007625 ORTHO05D009738 3.8e-95 352.1 254 66.1
Rhsim02G0010500 Rhododendron simsii HOM05D007625 ORTHO05D009738 2.7e-93 345.9 240 68.3
Hma1.2p1_1567F.1_g291060 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 8.7e-92 340.9 212 77.8
ATR0796G164 Amborella trichopoda HOM05D007625 ORTHO05D009738 1.8e-89 333.2 248 64.1
Hma1.2p1_0078F.1_g040640 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 4.4e-88 328.6 211 75.4
Os01g0120400 Oryza sativa ssp. japonica HOM05D007625 ORTHO05D009738 1.0e-84 317.4 249 58.2
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 2.3e-84 316.2 223 67.7
vmacro15237 Vaccinium macrocarpon HOM05D007625 ORTHO05D009738 2.8e-82 309.3 253 62.1
Pp3c1_7890 Physcomitrium patens HOM05D007625 ORTHO05D009738 1.3e-79 300.4 248 59.3
Nn3g21433 Nelumbo nucifera HOM05D007625 ORTHO05D009738 2.2e-79 299.7 250 60.0
Cpa.g.sc16.167 Carica papaya HOM05D007625 ORTHO05D009738 1.6e-77 293.5 201 69.7
Lj3A816T27 Lonicera japonica HOM05D007625 ORTHO05D009738 1.8e-76 290.0 213 68.1
Lj3A819G38 Lonicera japonica HOM05D007625 ORTHO05D009738 5.5e-70 268.5 272 55.1
SMO356G0461 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 5.5e-70 268.5 249 52.6
Aa31LG8G3700 Aethionema arabicum HOM05D007625 ORTHO05D009738 2.7e-69 266.2 271 53.5
AUR62035873 Chenopodium quinoa HOM05D007625 ORTHO05D009738 3.5e-69 265.8 194 64.4
CDE12G0709 Ceratophyllum demersum HOM05D007625 ORTHO05D009738 6.7e-68 261.5 249 52.6
Carub.0003s1629 Capsella rubella HOM05D007625 ORTHO05D009738 8.7e-68 261.2 161 77.0
Glyma.17G026200 Glycine max HOM05D007625 ORTHO05D009738 6.2e-66 255.0 360 43.3
SMO002G0002 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 6.2e-66 255.0 238 52.5
AagrBONN_evm.TU.Sc2ySwM_228.2358 Anthoceros agrestis HOM05D007625 ORTHO05D009738 7.9e-61 238.0 181 61.3
Sc19g0005180 Simmondsia chinensis HOM05D007625 ORTHO05D009738 3.7e-58 229.2 255 49.4
EL10Ac3g06592 Beta vulgaris HOM05D007625 ORTHO05D009738 3.9e-52 209.1 249 47.0
MCO16G322 Micromonas commoda HOM05D007625 ORTHO05D009738 7.4e-51 204.9 258 45.0
Zm00001eb334800 Zea mays HOM05D007625 ORTHO05D009738 1.8e-49 200.3 178 54.5
BcaB03g15776 Brassica carinata HOM05D007625 ORTHO05D009738 7.7e-32 141.7 114 62.3
unitig_0.g621 Utricularia gibba HOM05D007625 ORTHO05D009738 3.0e-28 129.8 145 51.0
Medtr4g123440 Medicago truncatula HOM05D007625 ORTHO05D009738 8.3e-26 121.7 117 54.7
Cpa.g.c47082 Carica papaya HOM05D007625 ORTHO05D009738 5.3e-25 119.0 82 69.5
Hma1.2p1_0785F.1_g217410 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 6.5e-23 112.1 66 75.8
Aqoxy2G02999 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 8.3e-18 95.1 66 69.7
Glyma.19G060100 Glycine max HOM05D007625 ORTHO05D009738 1.3e-15 87.8 99 50.5
MD16G1169600 Malus domestica HOM05D007625 ORTHO05D009738 7.2e-14 82.0 66 60.6
Lalb_Chr08g0246781 Lupinus albus HOM05D001816 ORTHO05D002001 3.7e-10 69.7 269 28.3
arahy.Tifrunner.gnm1.ann1.X97WXI Arachis hypogaea HOM05D001816 ORTHO05D002001 3.2e-09 66.6 269 28.3
arahy.Tifrunner.gnm1.ann1.1BU1FJ Arachis hypogaea HOM05D001816 ORTHO05D002001 7.0e-09 65.5 269 27.1
SMO234G0071 Selaginella moellendorffii HOM05D001816 ORTHO05D002001 9.2e-09 65.1 257 26.1
Nn6g31779 Nelumbo nucifera HOM05D001816 ORTHO05D002001 2.0e-08 63.9 242 27.3
Medtr3g118360 Medicago truncatula HOM05D001816 ORTHO05D002001 4.5e-08 62.8 269 27.1
Pp3c2_4380 Physcomitrium patens HOM05D001816 ORTHO05D002001 4.5e-08 62.8 234 26.5
TPR.G38581 Trifolium pratense HOM05D001816 ORTHO05D002001 4.5e-08 62.8 268 26.9
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 5.9e-08 62.4 235 26.0
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 7.8e-08 62.0 233 27.5
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.0e-07 61.6 235 27.2
Sabra09G0109800 Salix brachista HOM05D001816 ORTHO05D002001 1.0e-07 61.6 239 26.4
Haze_02022 Corylus avellana HOM05D001816 ORTHO05D002001 1.3e-07 61.2 268 26.9
CiPaw.05G091200 Carya illinoinensis HOM05D001816 ORTHO05D002001 1.7e-07 60.8 234 26.9
FvH4_2g16070 Fragaria vesca HOM05D001816 ORTHO05D002001 2.3e-07 60.5 226 26.5
FAN24G0316 Fragaria x ananassa HOM05D001816 ORTHO05D002001 2.3e-07 60.5 226 26.5
Glyma.04G001600 Glycine max HOM05D001816 ORTHO05D002001 2.3e-07 60.5 272 27.6
HanXRQChr11g0337711 Helianthus annuus HOM05D001816 ORTHO05D002001 2.3e-07 60.5 244 25.4
HanXRQChr17g0559451 Helianthus annuus HOM05D001816 ORTHO05D002001 2.9e-07 60.1 264 26.9
MCO11G803 Micromonas commoda HOM05D001816 ORTHO05D002001 2.9e-07 60.1 224 25.9
Ah.01g023480 Amaranthus hybridus HOM05D001816 ORTHO05D002001 3.9e-07 59.7 227 26.0
Cfa005345 Carpinus fangiana HOM05D001816 ORTHO05D002001 3.9e-07 59.7 268 26.5
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 3.9e-07 59.7 231 25.1
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 3.9e-07 59.7 235 24.7
FAN15G3397 Fragaria x ananassa HOM05D001816 ORTHO05D002001 3.9e-07 59.7 226 26.1
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 3.9e-07 59.7 237 24.5
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 3.9e-07 59.7 235 24.7
QL11p055697 Quercus lobata HOM05D001816 ORTHO05D002001 3.9e-07 59.7 227 28.2
Potri.009G141300 Populus trichocarpa HOM05D001816 ORTHO05D002001 5.0e-07 59.3 239 26.8
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 6.6e-07 58.9 240 25.4
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 6.6e-07 58.9 240 25.4
ECA233G4820 Erigeron canadensis HOM05D001816 ORTHO05D002001 6.6e-07 58.9 229 27.1
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 6.6e-07 58.9 240 25.4
QL11p055386 Quercus lobata HOM05D001816 ORTHO05D002001 6.6e-07 58.9 227 27.8
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.1e-06 58.2 243 23.9
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 1.1e-06 58.2 241 25.7
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 1.1e-06 58.2 241 25.7
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 1.1e-06 58.2 236 24.6
RcHm_v2.0_Chr5g0008751 Rosa chinensis HOM05D007625 ORTHO05D343624 1.1e-06 58.2 35 71.4
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 1.1e-06 58.2 231 25.1
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 1.9e-06 57.4 235 25.5
FAN20G1974 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.9e-06 57.4 226 26.1
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 1.9e-06 57.4 231 26.8
RcHm_v2.0_Chr6g0279751 Rosa chinensis HOM05D001816 ORTHO05D002001 2.5e-06 57.0 226 26.1
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 2.5e-06 57.0 235 24.3
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 3.3e-06 56.6 235 25.5
Actinidia27035 Actinidia chinensis HOM05D001816 ORTHO05D002001 4.3e-06 56.2 110 35.5
MD10G1133000 Malus domestica HOM05D001816 ORTHO05D002001 4.3e-06 56.2 227 24.7
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 4.3e-06 56.2 235 25.5
Prupe.8G174300 Prunus persica HOM05D001816 ORTHO05D002001 4.3e-06 56.2 227 25.1
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 4.3e-06 56.2 243 24.7
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 5.6e-06 55.8 236 23.3
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 5.6e-06 55.8 239 24.7
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 5.6e-06 55.8 231 25.1
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 5.6e-06 55.8 231 25.1
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 9.5e-06 55.1 235 25.1


User provided reference genes

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