Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2502 Acer truncatum HOM05D002407 ORTHO05D002476 5.1e-79 298.5 269 100.0
Ciclev10004136m.g Citrus clementina HOM05D002407 ORTHO05D002476 3.5e-43 179.5 277 80.1
CiPaw.01G164400 Carya illinoinensis HOM05D002407 ORTHO05D002476 6.8e-39 165.2 260 62.7
Potri.010G089700 Populus trichocarpa HOM05D002407 ORTHO05D002476 6.8e-39 165.2 272 66.5
Sabra08G0115000 Salix brachista HOM05D002407 ORTHO05D002476 2.0e-38 163.7 273 71.8
GSVIVG01017938001 Vitis vinifera HOM05D002407 ORTHO05D002476 2.0e-38 163.7 264 58.3
Potri.008G151200 Populus trichocarpa HOM05D002407 ORTHO05D002476 4.4e-38 162.5 269 72.5
Gorai.011G169000 Gossypium raimondii HOM05D002407 ORTHO05D002476 4.1e-36 156.0 274 67.5
Nn1g02265 Nelumbo nucifera HOM05D002407 ORTHO05D002476 5.4e-36 155.6 258 62.4
PGR004G2462 Punica granatum HOM05D002407 ORTHO05D002476 1.3e-34 151.0 262 77.5
QL06p003139 Quercus lobata HOM05D002407 ORTHO05D002476 2.3e-34 150.2 264 63.6
ClCG06G006080 Citrullus lanatus HOM05D002407 ORTHO05D002476 3.8e-34 149.4 261 64.0
Nn4g26275 Nelumbo nucifera HOM05D002407 ORTHO05D002476 1.5e-33 147.5 258 61.6
RcHm_v2.0_Chr4g0416621 Rosa chinensis HOM05D002407 ORTHO05D002476 1.9e-33 147.1 265 69.1
MELO3C014484.2 Cucumis melo HOM05D002407 ORTHO05D002476 2.5e-33 146.7 261 62.8
TWI53G2093 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 2.5e-33 146.7 269 58.7
CsaV3_6G038190 Cucumis sativus L. HOM05D002407 ORTHO05D002476 1.2e-32 144.4 261 62.1
Manes.15G027400 Manihot esculenta HOM05D002407 ORTHO05D002476 1.6e-32 144.1 279 69.5
Prupe.1G011200 Prunus persica HOM05D002407 ORTHO05D002476 2.8e-32 143.3 259 68.3
Cpa.g.sc58.130 Carica papaya HOM05D002407 ORTHO05D002476 6.1e-32 142.1 249 73.1
TAR636G3152 Trochodendron aralioides HOM05D002407 ORTHO05D002476 6.1e-32 142.1 261 59.0
Sed0021914 Sechium edule HOM05D002407 ORTHO05D002476 1.8e-31 140.6 261 60.9
Haze_00920 Corylus avellana HOM05D002407 ORTHO05D002476 2.3e-31 140.2 261 64.8
Sabra10G0053600 Salix brachista HOM05D002407 ORTHO05D002476 2.3e-31 140.2 266 54.5
TWI09G0219 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 5.2e-31 139.0 261 54.8
FAN07G2387 Fragaria x ananassa HOM05D002407 ORTHO05D002476 8.8e-31 138.3 265 64.5
Lj5g0016334 Lotus japonicus HOM05D002407 ORTHO05D002476 8.8e-31 138.3 264 65.9
arahy.Tifrunner.gnm1.ann1.C339P9 Arachis hypogaea HOM05D002407 ORTHO05D002476 2.6e-30 136.7 264 54.2
MD13G1190800 Malus domestica HOM05D002407 ORTHO05D002476 2.6e-30 136.7 257 63.4
CiPaw.02G096000 Carya illinoinensis HOM05D002407 ORTHO05D002476 4.4e-30 136.0 268 56.0
Duzib052G1002 Durio zibethinus HOM05D002407 ORTHO05D002476 4.9e-29 132.5 278 65.5
MD16G1191200 Malus domestica HOM05D002407 ORTHO05D002476 6.3e-29 132.1 259 55.2
CARHR098270 Cardamine hirsuta HOM05D002407 ORTHO05D002476 8.3e-29 131.7 280 67.9
VMungo0720G1158 Vigna mungo HOM05D002407 ORTHO05D002476 1.4e-28 131.0 258 52.7
Aa31LG8G8910 Aethionema arabicum HOM05D002407 ORTHO05D002476 4.1e-28 129.4 275 64.7
Gohir.A09G214700 Gossypium hirsutum HOM05D002407 ORTHO05D002476 5.4e-28 129.0 259 64.9
Sp3g20150 Schrenkiella parvula HOM05D002407 ORTHO05D002476 7.0e-28 128.6 278 68.3
Manes.15G026500 Manihot esculenta HOM05D002407 ORTHO05D002476 9.2e-28 128.3 279 68.8
Phvul.007G055400 Phaseolus vulgaris HOM05D002407 ORTHO05D002476 1.2e-27 127.9 258 52.7
MBI04_g44890_MAGBIO Magnolia biondii HOM05D002407 ORTHO05D002476 2.0e-27 127.1 259 52.9
THA.LOC104808535 Tarenaya hassleriana HOM05D002407 ORTHO05D002476 2.7e-27 126.7 280 55.0
Dinv44512 Davidia involucrata HOM05D002407 ORTHO05D002476 3.5e-27 126.3 229 61.1
Gorai.006G237700 Gossypium raimondii HOM05D002407 ORTHO05D002476 3.5e-27 126.3 258 64.0
Eucgr.H03537 Eucalyptus grandis HOM05D002407 ORTHO05D002476 4.5e-27 125.9 262 67.2
TWI73G0052 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 1.7e-26 124.0 271 53.5
TAR633G0416 Trochodendron aralioides HOM05D002407 ORTHO05D002476 2.3e-26 123.6 258 54.7
FvH4_4g15230 Fragaria vesca HOM05D002407 ORTHO05D002476 3.8e-26 122.9 264 64.4
Carub.0007s2714 Capsella rubella HOM05D002407 ORTHO05D002476 1.1e-25 121.3 263 59.3
Gohir.A10G117100 Gossypium hirsutum HOM05D002407 ORTHO05D002476 1.1e-25 121.3 242 59.1
BcaB06g26339 Brassica carinata HOM05D002407 ORTHO05D002476 1.5e-25 120.9 272 61.0
SHI00424 Sapria himalayana HOM05D002407 ORTHO05D002476 1.5e-25 120.9 266 51.5
FAN12G3852 Fragaria x ananassa HOM05D002407 ORTHO05D002476 2.5e-25 120.2 264 56.8
Actinidia23483 Actinidia chinensis HOM05D002407 ORTHO05D002476 3.3e-25 119.8 238 57.6
Carub.0003s2254 Capsella rubella HOM05D002407 ORTHO05D002476 5.6e-25 119.0 284 66.5
TAR362G1005 Trochodendron aralioides HOM05D002407 ORTHO05D002476 5.6e-25 119.0 266 56.0
Glyma.10G249300 Glycine max HOM05D002407 ORTHO05D002476 7.3e-25 118.6 231 59.3
AL3G36660 Arabidopsis lyrata HOM05D002407 ORTHO05D002476 9.5e-25 118.2 282 67.0
AT3G22380 Arabidopsis thaliana HOM05D002407 ORTHO05D002476 1.2e-24 117.9 283 67.8
BcaC05g28079 Brassica carinata HOM05D002407 ORTHO05D002476 2.1e-24 117.1 270 63.3
C05p41010 Brassica napus HOM05D002407 ORTHO05D002476 2.1e-24 117.1 270 63.3
BolC5t32844H Brassica oleracea HOM05D002407 ORTHO05D002476 2.1e-24 117.1 270 63.3
Glyma.20G144400 Glycine max HOM05D002407 ORTHO05D002476 3.6e-24 116.3 233 54.9
THA.LOC104803022 Tarenaya hassleriana HOM05D002407 ORTHO05D002476 3.6e-24 116.3 280 63.2
C01p41910 Brassica napus HOM05D002407 ORTHO05D002476 4.7e-24 115.9 270 64.4
Hund12142 Selenicereus undatus HOM05D002407 ORTHO05D002476 6.1e-24 115.5 272 54.8
BcaC09g49170 Brassica carinata HOM05D002407 ORTHO05D002476 8.0e-24 115.2 270 61.1
BolC1t04147H Brassica oleracea HOM05D002407 ORTHO05D002476 8.0e-24 115.2 270 61.1
AUR62038105 Chenopodium quinoa HOM05D002407 ORTHO05D002476 1.8e-23 114.0 276 43.5
Gohir.D09G217200 Gossypium hirsutum HOM05D002407 ORTHO05D002476 1.8e-23 114.0 241 66.4
Thecc.04G228600 Theobroma cacao HOM05D002407 ORTHO05D002476 4.0e-23 112.8 260 72.3
Duzib151G0448 Durio zibethinus HOM05D002407 ORTHO05D002476 2.0e-22 110.5 267 71.5
Nitab4.5_0007048g0010 Nicotiana tabacum HOM05D002407 ORTHO05D002476 2.0e-22 110.5 289 69.2
THA.LOC104822274 Tarenaya hassleriana HOM05D002407 ORTHO05D002476 4.4e-22 109.4 273 60.4
arahy.Tifrunner.gnm1.ann1.GGU5D9 Arachis hypogaea HOM05D002407 ORTHO05D002476 2.2e-21 107.1 97 63.9
Psat6g208200 Pisum sativum HOM05D002407 ORTHO05D002476 2.2e-21 107.1 214 58.4
Lsat_1_v5_gn_5_148881 Lactuca sativa HOM05D002407 ORTHO05D002476 3.7e-21 106.3 255 63.5
Ca_10916_v3 Cicer arietinum L. HOM05D002407 ORTHO05D002476 6.4e-21 105.5 214 57.0
Dinv38434 Davidia involucrata HOM05D002407 ORTHO05D002476 6.4e-21 105.5 92 67.4
Medtr1g104710 Medicago truncatula HOM05D002407 ORTHO05D002476 6.4e-21 105.5 214 63.6
Sc13g0004300 Simmondsia chinensis HOM05D002407 ORTHO05D002476 6.4e-21 105.5 248 46.0
AL7G40870 Arabidopsis lyrata HOM05D002407 ORTHO05D002476 1.1e-20 104.8 266 53.0
Solyc09g075830.3 Solanum lycopersicum HOM05D002407 ORTHO05D002476 1.1e-20 104.8 289 62.6
Sopen09g030650 Solanum pennellii HOM05D002407 ORTHO05D002476 1.1e-20 104.8 286 61.2
A05p26430 Brassica napus HOM05D002407 ORTHO05D002476 1.4e-20 104.4 276 64.1
BraA05t21516Z Brassica rapa HOM05D002407 ORTHO05D002476 1.4e-20 104.4 276 64.1
Duzib212G0865 Durio zibethinus HOM05D002407 ORTHO05D002476 3.2e-20 103.2 248 75.8
TPR.G5532 Trifolium pratense HOM05D002407 ORTHO05D002476 4.1e-20 102.8 217 71.4
BcaB04g19200 Brassica carinata HOM05D002407 ORTHO05D002476 5.4e-20 102.4 259 57.1
PGSC0003DMG400031808 Solanum tuberosum HOM05D002407 ORTHO05D002476 5.4e-20 102.4 286 65.7
BcaB04g20522 Brassica carinata HOM05D002407 ORTHO05D002476 7.0e-20 102.1 266 63.5
Nitab4.5_0000795g0080 Nicotiana tabacum HOM05D002407 ORTHO05D002476 5.9e-19 99.0 291 67.4
MSTRG.4019 Avicennia marina HOM05D002407 ORTHO05D002476 3.0e-18 96.7 279 55.2
BcaC01g03446 Brassica carinata HOM05D002407 ORTHO05D002476 6.6e-18 95.5 260 58.1
C03p52490 Brassica napus HOM05D002407 ORTHO05D002476 6.6e-18 95.5 260 58.1
Oeu041218.1 Olea europaea HOM05D002407 ORTHO05D002476 1.5e-17 94.4 285 62.8
HPP92_024476 Vanilla planifolia HOM05D002407 ORTHO05D002476 1.5e-17 94.4 282 39.0
Rhsim02G0022900 Rhododendron simsii HOM05D002407 ORTHO05D002476 1.9e-17 94.0 254 54.3
BolC3t17519H Brassica oleracea HOM05D002407 ORTHO05D002476 2.5e-17 93.6 260 57.7
AUR62038630 Chenopodium quinoa HOM05D002407 ORTHO05D002476 2.5e-17 93.6 96 56.2
Sc25g0004400 Simmondsia chinensis HOM05D002407 ORTHO05D002476 2.5e-17 93.6 272 37.9
Potri.002G052300 Populus trichocarpa HOM05D002407 ORTHO05D002476 3.3e-17 93.2 261 36.0
Ah.13g073870 Amaranthus hybridus HOM05D002407 ORTHO05D002476 4.3e-17 92.8 267 47.2
HanXRQChr04g0111791 Helianthus annuus HOM05D002407 ORTHO05D002476 4.3e-17 92.8 250 64.8
COL.COLO4_10231 Corchorus olitorius HOM05D002407 ORTHO05D002476 7.3e-17 92.0 87 65.5
Cfa006148 Carpinus fangiana HOM05D002407 ORTHO05D002476 4.7e-16 89.4 258 45.0
HPP92_027912 Vanilla planifolia HOM05D002407 ORTHO05D002476 4.7e-16 89.4 261 39.1
Cc03_g03560 Coffea canephora HOM05D002407 ORTHO05D002476 8.0e-16 88.6 313 52.7
Atru.chr5.1448 Acer truncatum HOM05D002407 ORTHO05D002476 3.1e-15 86.7 260 40.0
Sabra02G0042400 Salix brachista HOM05D002407 ORTHO05D002476 3.1e-15 86.7 270 34.4
MSTRG.24745 Avicennia marina HOM05D002407 ORTHO05D002476 5.2e-15 85.9 282 61.3
DCAR_027191 Daucus carota HOM05D002407 ORTHO05D002476 5.2e-15 85.9 267 46.8
Hma1.2p1_3606F.1_g337000 Hydrangea macrophylla HOM05D002407 ORTHO05D002476 1.2e-14 84.7 199 71.9
FAN17G1063 Fragaria x ananassa HOM05D002407 ORTHO05D002476 1.5e-14 84.3 98 73.5
HanXRQChr04g0111801 Helianthus annuus HOM05D002407 ORTHO05D002476 1.5e-14 84.3 246 63.8
SalBow2G0563 Salvia bowleyana HOM05D002407 ORTHO05D002476 4.4e-14 82.8 295 57.6
A01p32710 Brassica napus HOM05D002407 ORTHO05D002476 5.8e-14 82.4 273 57.9
BraA01t03399Z Brassica rapa HOM05D002407 ORTHO05D002476 5.8e-14 82.4 273 57.9
ECA234G2398 Erigeron canadensis HOM05D002407 ORTHO05D002476 9.8e-14 81.6 87 65.5
MSTRG.21848 Avicennia marina HOM05D002407 ORTHO05D002476 2.2e-13 80.5 292 60.3
Peaxi162Scf00437g00026 Petunia axillaris HOM05D002407 ORTHO05D002476 2.2e-13 80.5 306 54.6
CSS0005054 Camellia sinensis var. sinensis HOM05D002407 ORTHO05D002476 2.9e-13 80.1 71 63.4
FAN22G1385 Fragaria x ananassa HOM05D002407 ORTHO05D002476 3.7e-13 79.7 100 75.0
Haze_04701 Corylus avellana HOM05D002407 ORTHO05D002476 4.9e-13 79.3 221 44.3
A03p42740 Brassica napus HOM05D002407 ORTHO05D002476 6.4e-13 79.0 261 39.5
HPP92_024376 Vanilla planifolia HOM05D002407 ORTHO05D002476 6.4e-13 79.0 98 50.0
Sed0008106 Sechium edule HOM05D002407 ORTHO05D002476 1.4e-12 77.8 282 39.4
SGA_v2.0_scaffold39G15271 Striga asiatica HOM05D002407 ORTHO05D002476 1.4e-12 77.8 287 52.3
BraA03t13421Z Brassica rapa HOM05D002407 ORTHO05D002476 1.9e-12 77.4 261 39.5
DCAR_027192 Daucus carota HOM05D002407 ORTHO05D002476 1.9e-12 77.4 274 44.5
GSVIVG01001149001 Vitis vinifera HOM05D002407 ORTHO05D002476 2.4e-12 77.0 260 48.8
Ciclev10018523m.g Citrus clementina HOM05D002407 ORTHO05D002476 3.2e-12 76.6 260 42.7
Migut.N00175 Erythranthe guttata HOM05D002407 ORTHO05D002476 3.2e-12 76.6 292 56.2
unitig_748.g8339 Utricularia gibba HOM05D002407 ORTHO05D002476 4.1e-12 76.3 261 40.2
Migut.G00324 Erythranthe guttata HOM05D002407 ORTHO05D002476 5.4e-12 75.9 294 55.1
Thecc.01G277700 Theobroma cacao HOM05D002407 ORTHO05D002476 7.0e-12 75.5 258 40.3
Lj5g0016690 Lotus japonicus HOM05D002407 ORTHO05D002476 9.2e-12 75.1 79 58.2
Actinidia36978 Actinidia chinensis HOM05D002407 ORTHO05D002476 2.0e-11 73.9 260 47.3
ClCG09G007080 Citrullus lanatus HOM05D002407 ORTHO05D002476 2.0e-11 73.9 266 48.9
MELO3C015830.2 Cucumis melo HOM05D002407 ORTHO05D002476 2.0e-11 73.9 266 35.7
Glyma.02G146900 Glycine max HOM05D002407 ORTHO05D002476 3.5e-11 73.2 83 60.2
vmacro15329 Vaccinium macrocarpon HOM05D002407 ORTHO05D002476 3.5e-11 73.2 98 53.1
CsaV3_7G028090 Cucumis sativus L. HOM05D002407 ORTHO05D002476 4.6e-11 72.8 266 48.9
PSO832G2586 Papaver somniferum HOM05D002407 ORTHO05D002476 4.6e-11 72.8 96 52.1
CAN.G907.19 Capsicum annuum HOM05D002407 ORTHO05D002476 6.0e-11 72.4 325 53.2
Duzib133G0624 Durio zibethinus HOM05D002407 ORTHO05D002476 6.0e-11 72.4 263 35.0
Nn2g10699 Nelumbo nucifera HOM05D002407 ORTHO05D002476 6.0e-11 72.4 92 53.3
VMungo0720G2301 Vigna mungo HOM05D002407 ORTHO05D002476 1.0e-10 71.6 77 59.7
COL.COLO4_09085 Corchorus olitorius HOM05D002407 ORTHO05D002476 1.3e-10 71.2 90 51.1
Duzib138G1894 Durio zibethinus HOM05D002407 ORTHO05D002476 1.3e-10 71.2 258 42.6
Glyma.10G027000 Glycine max HOM05D002407 ORTHO05D002476 1.1e-09 68.2 258 32.2
Potri.005G210200 Populus trichocarpa HOM05D002407 ORTHO05D002476 1.1e-09 68.2 274 33.6
unitig_32.g10810 Utricularia gibba HOM05D002407 ORTHO05D002476 1.1e-09 68.2 225 57.8
arahy.Tifrunner.gnm1.ann1.DHG9YX Arachis hypogaea HOM05D002407 ORTHO05D002476 3.3e-09 66.6 92 53.3
Sed0012197 Sechium edule HOM05D002407 ORTHO05D002476 3.3e-09 66.6 265 37.0
Actinidia08503 Actinidia chinensis HOM05D002407 ORTHO05D002476 4.3e-09 66.2 259 45.2
Lj6A599G41 Lonicera japonica HOM05D002407 ORTHO05D002476 4.3e-09 66.2 50 72.0
Lj6C594G25 Lonicera japonica HOM05D002407 ORTHO05D002476 9.5e-09 65.1 50 68.0
Ah.13g073850 Amaranthus hybridus HOM05D002407 ORTHO05D002476 1.6e-08 64.3 265 43.4
arahy.Tifrunner.gnm1.ann1.ZKNE4R Arachis hypogaea HOM05D002407 ORTHO05D002476 2.1e-08 63.9 92 52.2
Lalb_Chr05g0210931 Lupinus albus HOM05D002407 ORTHO05D002476 3.6e-08 63.2 93 51.6
HPP92_024870 Vanilla planifolia HOM05D002407 ORTHO05D002476 3.6e-08 63.2 97 44.3
HPP92_006103 Vanilla planifolia HOM05D002407 ORTHO05D002476 6.2e-08 62.4 78 48.7
Sabra05G0160300 Salix brachista HOM05D002407 ORTHO05D002476 2.3e-07 60.5 75 57.3
Lalb_Chr09g0319791 Lupinus albus HOM05D002407 ORTHO05D002476 4.0e-07 59.7 56 58.9
PSO210G7189 Papaver somniferum HOM05D002407 ORTHO05D002476 4.0e-07 59.7 44 72.7
Phvul.007G172500 Phaseolus vulgaris HOM05D002407 ORTHO05D002476 6.8e-07 58.9 254 33.9
Carub.0005s2985 Capsella rubella HOM05D002407 ORTHO05D002476 1.5e-06 57.8 81 50.6
Psat6g060680 Pisum sativum HOM05D002407 ORTHO05D002476 2.0e-06 57.4 85 54.1
C04p30050 Brassica napus HOM05D002407 ORTHO05D002476 2.6e-06 57.0 75 50.7
SEGI_33118 Sequoiadendron giganteum HOM05D002407 ORTHO05D013711 2.6e-06 57.0 83 48.2
THA.LOC104805011 Tarenaya hassleriana HOM05D002407 ORTHO05D002476 3.4e-06 56.6 271 32.5
Aa31LG10G17010 Aethionema arabicum HOM05D002407 ORTHO05D002476 7.5e-06 55.5 261 29.1
Thhalv10005768m.g Eutrema salsugineum HOM05D002407 ORTHO05D002476 7.5e-06 55.5 75 52.0
Nn4g25030 Nelumbo nucifera HOM05D002407 ORTHO05D002476 7.5e-06 55.5 52 59.6


User provided reference genes

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