Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 2.0e-83 312.4 161 100.0
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 3.3e-65 251.9 161 81.4
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 2.1e-64 249.2 159 81.1
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 2.8e-64 248.8 159 81.8
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 4.0e-63 245.0 161 78.9
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 9.9e-62 240.4 159 79.2
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 1.7e-61 239.6 159 78.6
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.9e-61 238.8 159 77.4
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.9e-61 238.8 159 77.4
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 8.4e-61 237.3 161 76.4
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 1.9e-60 236.1 157 79.0
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.4e-60 235.7 159 76.7
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.6e-59 233.0 161 77.0
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 1.3e-56 223.4 160 73.8
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 9.0e-55 217.2 159 73.0
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.2e-54 216.9 159 72.3
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 2.0e-54 216.1 159 73.0
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 9.9e-54 213.8 159 71.1
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 1.3e-53 213.4 157 72.6
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 1.3e-53 213.4 161 73.9
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 1.3e-53 213.4 158 71.5
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 1.7e-53 213.0 159 71.7
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.7e-53 213.0 159 71.7
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 2.9e-53 212.2 159 71.1
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 4.9e-53 211.5 161 73.3
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.1e-52 210.3 159 69.8
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.4e-52 209.9 159 69.2
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 2.4e-52 209.1 157 69.4
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 2.4e-52 209.1 156 71.8
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 3.2e-52 208.8 160 71.2
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 3.2e-52 208.8 158 70.3
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 5.4e-52 208.0 161 73.3
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 5.4e-52 208.0 158 69.0
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 5.4e-52 208.0 157 70.7
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 7.1e-52 207.6 159 68.6
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 7.1e-52 207.6 159 69.8
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.2e-51 206.8 157 70.7
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.2e-51 206.8 159 70.4
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 2.1e-51 206.1 158 70.3
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 2.1e-51 206.1 159 69.8
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 2.7e-51 205.7 157 72.0
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 2.7e-51 205.7 159 71.1
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.7e-51 205.7 161 67.7
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 4.6e-51 204.9 159 68.6
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 6.0e-51 204.5 159 68.6
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 6.0e-51 204.5 161 70.8
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 1.3e-50 203.4 159 69.2
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 1.3e-50 203.4 157 73.2
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 1.8e-50 203.0 161 70.2
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 2.3e-50 202.6 159 71.7
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.3e-50 202.6 160 71.2
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 2.3e-50 202.6 157 69.4
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 2.3e-50 202.6 159 69.8
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 3.0e-50 202.2 157 70.7
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 3.9e-50 201.8 160 71.2
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 5.1e-50 201.4 159 67.3
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.1e-49 200.3 161 68.3
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 1.9e-49 199.5 159 67.3
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 3.3e-49 198.7 157 72.0
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.3e-49 198.7 161 68.3
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 3.3e-49 198.7 157 69.4
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 5.6e-49 198.0 160 67.5
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.6e-49 198.0 158 69.6
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 5.6e-49 198.0 157 68.8
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 7.4e-49 197.6 157 70.7
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 9.6e-49 197.2 157 72.6
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 9.6e-49 197.2 149 69.8
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 9.6e-49 197.2 158 69.0
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 9.6e-49 197.2 158 69.0
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.3e-48 196.8 157 70.7
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 2.1e-48 196.1 185 61.1
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 2.1e-48 196.1 161 65.8
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 2.8e-48 195.7 159 67.9
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 2.8e-48 195.7 164 67.1
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.1e-47 193.7 161 65.2
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 1.4e-47 193.4 155 66.5
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 2.4e-47 192.6 159 69.2
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 4.0e-47 191.8 145 71.0
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 6.9e-47 191.0 155 65.8
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 2.6e-46 189.1 155 68.4
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 9.9e-46 187.2 174 63.8
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 9.9e-46 187.2 156 67.9
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 3.8e-45 185.3 161 65.2
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 1.4e-44 183.3 157 67.5
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 1.4e-44 183.3 125 76.0
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.4e-44 183.3 145 68.3
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.4e-44 183.3 145 68.3
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 9.3e-44 180.6 204 55.9
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 1.2e-43 180.3 157 63.1
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 6.0e-43 177.9 157 64.3
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 1.0e-42 177.2 129 71.3
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 1.3e-42 176.8 157 61.8
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 1.3e-42 176.8 157 60.5
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 1.3e-42 176.8 224 50.0
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.3e-42 176.0 159 62.9
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 5.1e-42 174.9 157 60.5
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 5.1e-42 174.9 157 61.1
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 8.7e-42 174.1 157 64.3
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.5e-41 172.6 157 61.8
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 3.3e-41 172.2 157 61.8
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 4.3e-41 171.8 132 70.5
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 7.4e-41 171.0 157 60.5
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 7.4e-41 171.0 123 74.0
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 9.6e-41 170.6 157 61.1
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 9.6e-41 170.6 157 61.1
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 9.6e-41 170.6 157 61.1
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 2.1e-40 169.5 158 60.8
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 2.8e-40 169.1 157 60.5
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 2.8e-40 169.1 157 60.5
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 2.8e-40 169.1 157 60.5
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 3.7e-40 168.7 157 63.1
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 4.8e-40 168.3 121 71.9
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 6.2e-40 167.9 157 65.0
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.1e-39 167.2 162 59.3
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 1.4e-39 166.8 157 58.6
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 2.4e-39 166.0 157 59.2
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 4.0e-39 165.2 157 65.6
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 1.2e-38 163.7 157 61.8
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 2.0e-38 162.9 126 69.8
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 2.6e-38 162.5 157 63.1
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 5.8e-38 161.4 143 65.7
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 2.9e-37 159.1 157 59.9
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 3.8e-37 158.7 174 52.9
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 4.9e-37 158.3 154 59.7
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 6.5e-37 157.9 157 61.1
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 8.4e-37 157.5 159 55.3
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 4.2e-36 155.2 161 59.6
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 1.6e-35 153.3 157 56.7
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.7e-35 152.5 129 65.1
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.6e-35 151.8 160 56.2
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 7.9e-35 151.0 126 67.5
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 1.3e-34 150.2 186 48.9
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.3e-34 150.2 157 59.9
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 3.9e-34 148.7 158 57.0
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 6.7e-34 147.9 119 66.4
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 1.5e-33 146.7 157 55.4
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.9e-33 146.4 145 59.3
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 1.9e-33 146.4 156 54.5
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 2.5e-33 146.0 96 76.0
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.5e-33 146.0 168 53.0
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 9.7e-33 144.1 158 57.0
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 9.7e-33 144.1 98 76.5
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 6.3e-32 141.4 102 69.6
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 6.3e-32 141.4 161 56.5
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 4.1e-31 138.7 271 38.7
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 5.3e-31 138.3 94 72.3
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 6.9e-31 137.9 174 51.7
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.2e-30 137.1 144 56.9
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.2e-30 137.1 140 57.9
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 1.0e-29 134.0 97 70.1
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 2.9e-29 132.5 93 68.8
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 5.0e-29 131.7 92 70.7
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 8.5e-29 131.0 118 61.9
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 1.4e-28 130.2 157 49.7
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 5.5e-28 128.3 93 69.9
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 5.5e-28 128.3 180 49.4
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 1.2e-27 127.1 152 53.3
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 2.7e-27 125.9 93 66.7
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 7.9e-27 124.4 177 45.8
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.3e-26 122.9 94 68.1
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 6.7e-26 121.3 159 49.7
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 2.8e-24 115.9 92 71.7
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 2.8e-24 115.9 159 46.5
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 2.3e-18 96.3 77 58.4
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 3.9e-18 95.5 91 61.5
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.0e-17 93.2 60 75.0
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.2e-16 89.7 60 73.3
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 6.3e-16 88.2 91 53.8
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 8.2e-16 87.8 83 49.4
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 1.8e-15 86.7 88 59.1
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 9.1e-15 84.3 59 69.5
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.2e-12 75.5 66 56.1
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 3.9e-10 68.9 99 48.5
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 2.4e-07 59.7 41 70.7
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 5.3e-07 58.5 44 63.6
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.6e-06 57.0 73 43.8
ATR0347G001 Amborella trichopoda HOM05D004104 ORTHO05D004755 2.6e-06 56.2 67 53.7
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 4.5e-06 55.5 76 43.4
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 7.7e-06 54.7 64 56.2


User provided reference genes

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