Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 2.8e-82 308.5 152 100.0
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 5.0e-23 111.7 133 45.9
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 4.1e-17 92.0 145 38.6
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 7.8e-16 87.8 149 36.9
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 2.9e-15 85.9 154 35.7
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 8.6e-15 84.3 149 35.6
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 1.1e-14 84.0 111 42.3
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.5e-14 83.6 104 43.3
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 1.5e-14 83.6 107 43.9
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 1.5e-14 83.6 145 36.6
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 1.5e-14 83.6 152 36.2
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 1.9e-14 83.2 135 38.5
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 2.5e-14 82.8 104 44.2
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 2.5e-14 82.8 104 44.2
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 2.5e-14 82.8 147 36.7
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 2.5e-14 82.8 100 46.0
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 3.3e-14 82.4 107 41.1
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 3.3e-14 82.4 155 32.3
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 3.3e-14 82.4 152 35.5
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 3.3e-14 82.4 152 35.5
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 3.3e-14 82.4 141 38.3
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 5.6e-14 81.6 104 46.2
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 5.6e-14 81.6 104 44.2
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 7.3e-14 81.3 117 40.2
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 9.5e-14 80.9 115 40.0
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 9.5e-14 80.9 113 39.8
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 1.2e-13 80.5 113 43.4
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 1.6e-13 80.1 113 44.2
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 1.6e-13 80.1 104 41.3
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 2.1e-13 79.7 104 41.3
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 2.8e-13 79.3 159 34.0
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 2.8e-13 79.3 140 35.7
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 3.6e-13 79.0 114 45.6
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 3.6e-13 79.0 142 35.2
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 3.6e-13 79.0 142 35.9
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 3.6e-13 79.0 142 35.9
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 4.7e-13 78.6 135 37.0
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 4.7e-13 78.6 147 35.4
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 4.7e-13 78.6 111 38.7
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 6.1e-13 78.2 113 40.7
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 8.0e-13 77.8 104 44.2
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 1.0e-12 77.4 113 42.5
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 1.8e-12 76.6 103 43.7
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 2.3e-12 76.3 103 40.8
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 3.0e-12 75.9 101 42.6
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 4.0e-12 75.5 101 41.6
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 4.0e-12 75.5 111 38.7
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 4.0e-12 75.5 138 34.8
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 4.0e-12 75.5 101 42.6
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 5.2e-12 75.1 132 34.8
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 6.8e-12 74.7 115 35.7
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 6.8e-12 74.7 139 36.7
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-11 73.9 101 40.6
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 1.2e-11 73.9 102 40.2
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 2.0e-11 73.2 100 40.0
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 2.6e-11 72.8 111 37.8
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 2.6e-11 72.8 100 40.0
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 2.6e-11 72.8 157 31.2
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 3.4e-11 72.4 111 38.7
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 4.4e-11 72.0 117 40.2
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 4.4e-11 72.0 111 40.5
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 9.8e-11 70.9 106 38.7
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 9.8e-11 70.9 111 37.8
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 1.3e-10 70.5 111 37.8
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 1.3e-10 70.5 111 37.8
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 1.3e-10 70.5 111 37.8
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 1.3e-10 70.5 153 34.6
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-10 70.1 139 34.5
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 1.7e-10 70.1 111 37.8
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 1.7e-10 70.1 102 41.2
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 1.7e-10 70.1 111 37.8
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 1.7e-10 70.1 104 40.4
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 2.2e-10 69.7 111 37.8
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 2.9e-10 69.3 111 37.8
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 2.9e-10 69.3 111 37.8
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 2.9e-10 69.3 114 38.6
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 3.7e-10 68.9 100 40.0
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 3.7e-10 68.9 100 40.0
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 3.7e-10 68.9 141 33.3
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 3.7e-10 68.9 143 34.3
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 4.9e-10 68.6 117 39.3
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 4.9e-10 68.6 143 33.6
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 4.9e-10 68.6 108 37.0
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 6.4e-10 68.2 88 38.6
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 6.4e-10 68.2 100 39.0
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 6.4e-10 68.2 100 39.0
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 6.4e-10 68.2 100 39.0
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 6.4e-10 68.2 111 36.9
Atru.chr4.1966 Acer truncatum HOM05D004737 ORTHO05D052072 8.3e-10 67.8 60 60.0
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-09 66.6 117 36.8
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 1.8e-09 66.6 112 39.3
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 1.8e-09 66.6 177 29.9
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 1.8e-09 66.6 144 32.6
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 2.4e-09 66.2 104 37.5
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 2.4e-09 66.2 113 37.2
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 2.4e-09 66.2 113 37.2
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 3.2e-09 65.9 99 40.4
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 7.0e-09 64.7 109 40.4
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 7.0e-09 64.7 101 36.6
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 9.2e-09 64.3 139 33.1
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 1.2e-08 63.9 73 43.8
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 1.6e-08 63.5 133 36.1
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 2.7e-08 62.8 106 39.6
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 4.6e-08 62.0 123 39.0
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 1.0e-07 60.8 106 39.6
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 3.9e-07 58.9 94 34.0
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 6.6e-07 58.2 108 29.6
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 6.6e-07 58.2 124 34.7
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.1e-06 57.4 133 30.8
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 1.1e-06 57.4 73 37.0
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-06 57.0 95 37.9
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 7.3e-06 54.7 104 35.6


User provided reference genes

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