Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 4.2e-156 554.7 287 100.0
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 2.8e-115 419.1 289 73.4
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 6.2e-99 364.8 286 66.1
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 8.1e-99 364.4 289 64.7
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 4.0e-98 362.1 286 64.3
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 5.3e-98 361.7 286 63.6
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 6.9e-98 361.3 286 66.1
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 2.2e-96 356.3 289 61.2
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 2.5e-92 342.8 289 59.2
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 1.6e-91 340.1 286 60.5
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 8.1e-91 337.8 293 59.4
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 2.4e-90 336.3 253 65.6
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 2.6e-89 332.8 286 59.4
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 1.3e-88 330.5 289 61.9
MD13G1219500 Malus domestica HOM05D008048 ORTHO05D010199 3.8e-88 328.9 288 59.0
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 5.4e-87 325.1 290 56.9
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 7.1e-87 324.7 289 60.6
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 1.2e-86 323.9 286 57.7
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 1.2e-86 323.9 286 58.4
Medtr1g045060 Medicago truncatula HOM05D008048 ORTHO05D010199 1.2e-86 323.9 289 59.9
Sabra08G0130700 Salix brachista HOM05D008048 ORTHO05D010199 4.6e-86 322.0 291 60.1
Psat6g106440 Pisum sativum HOM05D008048 ORTHO05D010199 6.0e-86 321.6 279 60.6
TPR.G28751 Trifolium pratense HOM05D008048 ORTHO05D010199 6.0e-86 321.6 274 60.9
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 1.0e-85 320.9 291 59.1
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 2.3e-85 319.7 286 56.6
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 8.7e-85 317.8 289 55.4
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 2.5e-84 316.2 291 59.5
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 3.3e-84 315.8 289 57.4
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 9.6e-84 314.3 290 56.9
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 2.1e-83 313.2 262 60.7
FAN17G0666 Fragaria x ananassa HOM05D008048 ORTHO05D010199 4.8e-83 312.0 281 57.3
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 4.8e-83 312.0 290 56.6
MD16G1225000 Malus domestica HOM05D008048 ORTHO05D010199 1.1e-82 310.8 279 56.3
TWI73G0695 Tripterygium wilfordii HOM05D008048 ORTHO05D010199 2.4e-82 309.7 297 57.2
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 5.3e-82 308.5 289 54.3
FvH4_4g04390 Fragaria vesca HOM05D008048 ORTHO05D010199 9.0e-82 307.8 277 57.4
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 9.0e-82 307.8 290 56.2
VMungo0720G0410 Vigna mungo HOM05D008048 ORTHO05D010199 1.3e-80 303.9 291 55.0
FAN22G2321 Fragaria x ananassa HOM05D008048 ORTHO05D010199 4.9e-80 302.0 281 55.5
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 8.4e-80 301.2 287 54.0
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 1.4e-79 300.4 281 55.5
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 4.2e-79 298.9 295 57.6
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 2.7e-78 296.2 285 53.3
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 4.6e-78 295.4 287 51.6
Phvul.007G271100 Phaseolus vulgaris HOM05D008048 ORTHO05D010199 6.0e-78 295.0 288 56.2
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 3.9e-77 292.4 297 52.5
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 1.6e-75 287.0 287 52.3
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 4.8e-75 285.4 285 52.3
Lj6g0004811 Lotus japonicus HOM05D008048 ORTHO05D010199 6.2e-75 285.0 290 54.5
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 6.2e-75 285.0 285 51.6
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 1.5e-73 280.4 279 51.3
Thecc.04G262100 Theobroma cacao HOM05D008048 ORTHO05D010199 1.0e-72 277.7 223 61.9
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 6.0e-70 268.5 266 56.0
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 3.1e-66 256.1 398 39.9
Rhsim04G0173500 Rhododendron simsii HOM05D008048 ORTHO05D010199 3.1e-66 256.1 242 55.8
SGA_v2.0_scaffold67G22704 Striga asiatica HOM05D008048 ORTHO05D010199 1.5e-65 253.8 227 55.9
Glyma.20G086000 Glycine max HOM05D008048 ORTHO05D010199 4.2e-63 245.7 268 52.6
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 1.6e-62 243.8 286 51.0
Cpa.g.sc44.13 Carica papaya HOM05D008048 ORTHO05D010199 3.2e-55 219.5 182 55.5
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 3.2e-55 219.5 290 43.8
GSVIVG01027901001 Vitis vinifera HOM05D008048 ORTHO05D010199 2.6e-44 183.3 165 55.8
Lj6P622T54 Lonicera japonica HOM05D008048 ORTHO05D010199 1.4e-42 177.6 159 59.7
DCAR_027338 Daucus carota HOM05D008048 ORTHO05D010199 1.0e-40 171.4 186 47.3
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 8.5e-40 168.3 173 50.3
FAN12G0723 Fragaria x ananassa HOM05D008048 ORTHO05D010199 2.6e-36 156.8 138 55.1
FAN12G2845 Fragaria x ananassa HOM05D008048 ORTHO05D010199 2.6e-36 156.8 138 55.1
Solyc09g090560.2 Solanum lycopersicum HOM05D008048 ORTHO05D010199 3.7e-35 152.9 159 54.7
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 1.8e-34 150.6 170 45.9
FAN12G1007 Fragaria x ananassa HOM05D008048 ORTHO05D010199 8.8e-29 131.7 108 64.8
FAN12G3146 Fragaria x ananassa HOM05D008048 ORTHO05D010199 8.8e-29 131.7 108 64.8
EL10Ac3g04955 Beta vulgaris HOM05D008048 ORTHO05D010199 5.7e-28 129.0 110 57.3
Mapoly0103s0043 Marchantia polymorpha HOM05D007245 ORTHO05D009049 1.5e-23 114.4 291 27.5
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 2.5e-23 113.6 272 28.3
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 3.3e-23 113.2 273 31.5
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 1.2e-22 111.3 283 30.0
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 3.6e-22 109.8 267 30.7
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 8.0e-22 108.6 267 30.7
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 3.0e-21 106.7 267 30.3
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 6.8e-21 105.5 281 29.5
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 6.8e-21 105.5 251 29.9
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 8.9e-21 105.1 273 31.1
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 5.7e-20 102.4 252 30.2
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 9.8e-20 101.7 249 30.5
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 1.3e-19 101.3 261 29.5
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 2.2e-19 100.5 271 28.0
Ca_11923_v3 Cicer arietinum L. HOM05D008048 ORTHO05D010199 6.3e-19 99.0 106 49.1
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 8.3e-19 98.6 253 27.7
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 8.3e-19 98.6 252 30.2
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 8.3e-19 98.6 240 27.5
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 8.3e-19 98.6 253 27.3
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 4.1e-18 96.3 256 26.6
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 5.4e-18 95.9 261 29.5
TAR365G0106 Trochodendron aralioides HOM05D008048 ORTHO05D010199 5.4e-18 95.9 110 44.5
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 7.0e-18 95.5 255 27.5
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 7.0e-18 95.5 238 28.6
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 7.0e-18 95.5 274 26.6
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 7.0e-18 95.5 258 29.8
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 7.0e-18 95.5 273 27.5
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 1.6e-17 94.4 273 26.0
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 1.6e-17 94.4 242 29.3
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 2.0e-17 94.0 258 26.7
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 3.5e-17 93.2 265 26.8
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 5.9e-17 92.4 255 29.0
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 5.9e-17 92.4 277 25.3
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 7.8e-17 92.0 253 28.5
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 1.0e-16 91.7 265 27.9
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 1.0e-16 91.7 278 26.3
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 1.3e-16 91.3 277 27.1
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 1.3e-16 91.3 281 26.7
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 1.7e-16 90.9 236 30.1
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 1.7e-16 90.9 243 26.7
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 2.3e-16 90.5 286 29.0
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 2.3e-16 90.5 258 28.7
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 3.9e-16 89.7 285 24.9
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 3.9e-16 89.7 243 28.8
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 3.9e-16 89.7 255 27.5
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 3.9e-16 89.7 265 25.7
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 5.0e-16 89.4 255 27.1
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 6.6e-16 89.0 257 27.6
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 6.6e-16 89.0 275 24.7
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 6.6e-16 89.0 288 24.7
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 8.6e-16 88.6 276 25.4
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 8.6e-16 88.6 279 25.8
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 8.6e-16 88.6 278 25.2
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 8.6e-16 88.6 276 25.4
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 8.6e-16 88.6 276 25.4
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 8.6e-16 88.6 262 26.3
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 1.1e-15 88.2 281 25.6
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 1.5e-15 87.8 248 28.6
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 1.5e-15 87.8 275 25.1
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 1.5e-15 87.8 278 24.8
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 1.5e-15 87.8 282 25.9
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 1.5e-15 87.8 266 26.7
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 2.5e-15 87.0 263 27.4
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 4.3e-15 86.3 260 26.9
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 4.3e-15 86.3 253 26.9
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 4.3e-15 86.3 288 25.3
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 1.2e-14 84.7 260 25.8
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 1.6e-14 84.3 266 26.3
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 1.6e-14 84.3 246 26.4
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 1.6e-14 84.3 291 24.4
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 2.1e-14 84.0 259 26.3
Pp3c12_14270 Physcomitrium patens HOM05D007245 ORTHO05D009049 2.1e-14 84.0 217 30.0
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 2.8e-14 83.6 278 24.8
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 4.7e-14 82.8 303 24.8
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 4.7e-14 82.8 260 25.4
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 8.0e-14 82.0 111 37.8
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 8.0e-14 82.0 293 25.6
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 8.0e-14 82.0 260 27.7
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 1.0e-13 81.6 259 27.0
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 1.8e-13 80.9 253 26.5
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 1.8e-13 80.9 293 24.9
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 1.8e-13 80.9 182 29.1
CDE06G2711 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 4.0e-13 79.7 275 24.7
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 4.0e-13 79.7 278 26.3
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 4.0e-13 79.7 253 26.5
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 4.0e-13 79.7 284 25.4
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 8.9e-13 78.6 286 23.8
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 1.5e-12 77.8 286 23.8
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 9.8e-12 75.1 256 26.6
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 1.3e-11 74.7 264 26.1
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 1.7e-11 74.3 286 23.1
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 1.7e-11 74.3 249 25.3
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 1.7e-11 74.3 266 26.7
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 2.2e-11 73.9 294 24.1
Medtr7g084610 Medicago truncatula HOM05D007245 ORTHO05D009049 2.9e-11 73.6 249 27.7
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 1.9e-10 70.9 254 26.8
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 2.4e-10 70.5 91 35.2
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 4.6e-09 66.2 106 32.1
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 7.8e-09 65.5 264 24.6
CDE02G4767 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 1.0e-08 65.1 268 25.7
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 1.0e-08 65.1 270 24.1
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 5.0e-08 62.8 238 24.4
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 8.6e-08 62.0 270 24.1
EL10Ac2g03533 Beta vulgaris HOM05D001193 ORTHO05D001016 9.5e-07 58.5 229 27.5
AUR62042868 Chenopodium quinoa HOM05D007245 ORTHO05D009049 1.2e-06 58.2 87 29.9
unitig_749.g14104 Utricularia gibba HOM05D001193 ORTHO05D001016 2.1e-06 57.4 275 26.2
Sp1g36300 Schrenkiella parvula HOM05D001193 ORTHO05D001016 3.6e-06 56.6 251 28.3
TPR.G2455 Trifolium pratense HOM05D001193 ORTHO05D001016 3.6e-06 56.6 156 28.2
Hma1.2p1_0075F.1_g039160 Hydrangea macrophylla HOM05D001193 ORTHO05D001016 8.0e-06 55.5 262 23.7
TWI60G0004 Tripterygium wilfordii HOM05D001193 ORTHO05D001016 8.0e-06 55.5 287 25.4


User provided reference genes

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