Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1428 Acer truncatum HOM05D005056 ORTHO05D006487 5.8e-133 477.6 254 100.0
Atru.chr3.3232 Acer truncatum HOM05D005056 ORTHO05D006487 5.8e-125 451.1 257 94.9
Ciclev10019145m.g Citrus clementina HOM05D005056 ORTHO05D006487 1.2e-98 363.6 260 76.9
Manes.16G069500 Manihot esculenta HOM05D005056 ORTHO05D006487 2.7e-90 335.9 255 72.9
TWI38G0332 Tripterygium wilfordii HOM05D005056 ORTHO05D006487 1.4e-89 333.6 264 70.1
Prupe.1G206800 Prunus persica HOM05D005056 ORTHO05D006487 8.8e-89 330.9 259 71.0
Dinv04468 Davidia involucrata HOM05D005056 ORTHO05D006487 9.7e-88 327.4 263 70.7
MD17G1177700 Malus domestica HOM05D005056 ORTHO05D006487 1.7e-87 326.6 260 71.2
Hma1.2p1_0150F.1_g066780 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 9.1e-86 320.9 261 70.9
Haze_01366 Corylus avellana HOM05D005056 ORTHO05D006487 2.9e-84 315.8 257 67.7
GSVIVG01038137001 Vitis vinifera HOM05D005056 ORTHO05D006487 2.9e-84 315.8 262 68.3
Cpa.g.sc114.8 Carica papaya HOM05D005056 ORTHO05D006487 5.0e-84 315.1 269 65.1
PGR142G4138 Punica granatum HOM05D005056 ORTHO05D006487 8.5e-84 314.3 257 67.7
Gorai.012G150100 Gossypium raimondii HOM05D005056 ORTHO05D006487 2.5e-83 312.8 266 68.8
RcHm_v2.0_Chr7g0219421 Rosa chinensis HOM05D005056 ORTHO05D006487 3.2e-83 312.4 257 65.8
Rhsim13G0194600 Rhododendron simsii HOM05D005056 ORTHO05D006656 1.6e-82 310.1 256 68.8
CSS0024905 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 1.4e-81 307.0 264 68.9
QL93p1902_0036 Quercus lobata HOM05D005056 ORTHO05D006487 1.8e-81 306.6 257 65.8
Eucgr.H00317 Eucalyptus grandis HOM05D005056 ORTHO05D006487 2.3e-81 306.2 257 67.7
TAR636G2681 Trochodendron aralioides HOM05D005056 ORTHO05D006487 3.0e-81 305.8 274 67.2
FAN04G0894 Fragaria x ananassa HOM05D005056 ORTHO05D006487 3.3e-80 302.4 257 64.2
FvH4_5g27692 Fragaria vesca HOM05D005056 ORTHO05D006487 4.4e-80 302.0 257 64.2
Thecc.05G215400 Theobroma cacao HOM05D005056 ORTHO05D006487 5.7e-80 301.6 264 66.7
FAN13G0846 Fragaria x ananassa HOM05D005056 ORTHO05D006487 2.2e-79 299.7 257 63.8
Gohir.A04G120600 Gossypium hirsutum HOM05D005056 ORTHO05D006487 4.8e-79 298.5 264 66.3
COL.COLO4_09146 Corchorus olitorius HOM05D005056 ORTHO05D006487 2.4e-78 296.2 261 66.3
FAN18G4484 Fragaria x ananassa HOM05D005056 ORTHO05D006487 3.1e-78 295.8 257 63.0
Duzib128G0002 Durio zibethinus HOM05D005056 ORTHO05D006487 4.1e-78 295.4 264 64.8
Sabra13G0104700 Salix brachista HOM05D005056 ORTHO05D006487 5.3e-78 295.0 253 66.4
Sabra13G0105000 Salix brachista HOM05D005056 ORTHO05D006487 5.3e-78 295.0 253 66.4
Sabra13G0105200 Salix brachista HOM05D005056 ORTHO05D006487 5.3e-78 295.0 253 66.4
Sabra13G0105300 Salix brachista HOM05D005056 ORTHO05D006487 5.3e-78 295.0 253 66.4
Hma1.2p1_0150F.1_g066790 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 1.6e-77 293.5 259 65.6
vmacro03868 Vaccinium macrocarpon HOM05D005056 ORTHO05D006487 4.5e-77 292.0 256 65.6
CSS0004898 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 1.3e-76 290.4 253 68.4
Gohir.D04G162100 Gossypium hirsutum HOM05D005056 ORTHO05D006487 1.3e-76 290.4 265 65.3
QL10p054991 Quercus lobata HOM05D005056 ORTHO05D006487 3.2e-75 285.8 261 62.1
Glyma.07G208300 Glycine max HOM05D005056 ORTHO05D006487 2.1e-74 283.1 258 63.6
CANSAT56G3616 Cannabis sativa HOM05D005056 ORTHO05D006487 8.0e-74 281.2 266 61.3
Glyma.02G137100 Glycine max HOM05D005056 ORTHO05D006487 8.0e-74 281.2 258 64.0
Potri.013G125800 Populus trichocarpa HOM05D005056 ORTHO05D006487 8.0e-74 281.2 263 61.6
Cc03_g13950 Coffea canephora HOM05D005056 ORTHO05D006487 1.2e-72 277.3 264 63.6
FAN08G2023 Fragaria x ananassa HOM05D005056 ORTHO05D006487 3.4e-72 275.8 258 59.7
DCAR_019081 Daucus carota HOM05D005056 ORTHO05D006487 4.8e-71 271.9 263 62.0
arahy.Tifrunner.gnm1.ann1.K7ZH1T Arachis hypogaea HOM05D005056 ORTHO05D006487 6.3e-71 271.6 262 58.8
arahy.Tifrunner.gnm1.ann1.X1H480 Arachis hypogaea HOM05D005056 ORTHO05D006487 6.3e-71 271.6 262 59.5
Migut.N03070 Erythranthe guttata HOM05D005056 ORTHO05D006487 4.1e-70 268.9 260 61.2
SalBow1G2014 Salvia bowleyana HOM05D005056 ORTHO05D006487 3.5e-69 265.8 259 61.0
MBI18_g06087_MAGBIO Magnolia biondii HOM05D005056 ORTHO05D006487 8.5e-68 261.2 263 60.5
Sc08g0000580 Simmondsia chinensis HOM05D005056 ORTHO05D006487 8.5e-68 261.2 260 61.2
VMungo0251G2998 Vigna mungo HOM05D005056 ORTHO05D006487 8.5e-68 261.2 264 58.7
Peaxi162Scf00568g00417 Petunia axillaris HOM05D005056 ORTHO05D006487 1.5e-67 260.4 259 61.0
Phvul.003G296300 Phaseolus vulgaris HOM05D005056 ORTHO05D006487 5.5e-67 258.5 264 59.1
SGA_v2.0_scaffold289G47281 Striga asiatica HOM05D005056 ORTHO05D006487 6.8e-65 251.5 254 57.9
Oeu018048.1 Olea europaea HOM05D005056 ORTHO05D006487 1.5e-64 250.4 296 53.4
Sopen11g030040 Solanum pennellii HOM05D005056 ORTHO05D006487 2.6e-64 249.6 260 59.2
Lalb_Chr16g0384481 Lupinus albus HOM05D005056 ORTHO05D006487 4.4e-64 248.8 259 58.7
Sopen11g029990 Solanum pennellii HOM05D005056 ORTHO05D006487 5.7e-64 248.4 260 58.5
Solyc11g072390.2 Solanum lycopersicum HOM05D005056 ORTHO05D006487 8.3e-63 244.6 260 58.1
CiPaw.02G100700 Carya illinoinensis HOM05D005056 ORTHO05D006487 1.1e-62 244.2 227 62.1
Solyc11g072320.3 Solanum lycopersicum HOM05D005056 ORTHO05D006487 1.4e-62 243.8 259 57.9
Nitab4.5_0002129g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 5.4e-62 241.9 256 59.4
Sed0010490 Sechium edule HOM05D005056 ORTHO05D006487 2.7e-61 239.6 257 56.0
Medtr4g087270 Medicago truncatula HOM05D005056 ORTHO05D006487 4.5e-61 238.8 262 55.7
AL4G42470 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 1.0e-60 237.7 267 55.1
CAN.G308.62 Capsicum annuum HOM05D005056 ORTHO05D006487 1.3e-60 237.3 256 56.2
TPR.G23553 Trifolium pratense HOM05D005056 ORTHO05D006487 6.6e-60 235.0 265 54.0
Aa31LG1G25370 Aethionema arabicum HOM05D005056 ORTHO05D006487 1.1e-59 234.2 265 55.1
HanXRQChr14g0439801 Helianthus annuus HOM05D005056 ORTHO05D006487 4.3e-59 232.3 259 55.6
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 7.3e-59 231.5 258 56.2
ClCG06G001090 Citrullus lanatus HOM05D005056 ORTHO05D006487 9.5e-59 231.1 255 56.1
Nitab4.5_0001802g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 9.5e-59 231.1 254 56.3
EL10Ac9g21710 Beta vulgaris HOM05D005056 ORTHO05D006487 2.1e-58 229.9 260 56.2
Hund06242 Selenicereus undatus HOM05D005056 ORTHO05D006487 1.8e-57 226.9 256 57.0
PSO170G2549 Papaver somniferum HOM05D005056 ORTHO05D006487 5.2e-57 225.3 271 54.6
Psat7g121360 Pisum sativum HOM05D005056 ORTHO05D006487 6.8e-57 224.9 267 53.2
MELO3C022426.2 Cucumis melo HOM05D005056 ORTHO05D006487 1.2e-56 224.2 258 54.3
CsaV3_6G007040 Cucumis sativus L. HOM05D005056 ORTHO05D006487 1.5e-56 223.8 258 54.3
Carub.0004s2618 Capsella rubella HOM05D005056 ORTHO05D006487 5.7e-56 221.9 267 53.2
Ah.01g019270 Amaranthus hybridus HOM05D005056 ORTHO05D006487 9.8e-56 221.1 257 55.3
AT2G43650 Arabidopsis thaliana HOM05D005056 ORTHO05D006487 1.7e-55 220.3 261 54.4
Sp4g25750 Schrenkiella parvula HOM05D005056 ORTHO05D006487 8.3e-55 218.0 266 53.8
CARHR138830 Cardamine hirsuta HOM05D005056 ORTHO05D006487 1.8e-54 216.9 258 53.1
PSO302G0034 Papaver somniferum HOM05D005056 ORTHO05D006487 4.1e-54 215.7 269 53.2
ECA238G2929 Erigeron canadensis HOM05D005056 ORTHO05D006487 7.0e-54 214.9 258 54.3
Lj4g0012801 Lotus japonicus HOM05D005056 ORTHO05D006487 9.2e-54 214.5 236 56.4
Lsat_1_v5_gn_2_46281 Lactuca sativa HOM05D005056 ORTHO05D006487 2.0e-53 213.4 255 52.9
Os01g0104800 Oryza sativa ssp. japonica HOM05D005056 ORTHO05D006487 5.0e-52 208.8 266 48.9
Ca_18642_v3 Cicer arietinum L. HOM05D005056 ORTHO05D006487 8.6e-52 208.0 254 53.1
SEGI_33254 Sequoiadendron giganteum HOM05D005056 ORTHO05D006487 5.6e-51 205.3 262 51.9
THA.LOC104803998 Tarenaya hassleriana HOM05D005056 ORTHO05D006487 2.1e-50 203.4 266 50.4
BcaB01g03369 Brassica carinata HOM05D005056 ORTHO05D006487 6.2e-50 201.8 267 50.9
BcaC01g05222 Brassica carinata HOM05D005056 ORTHO05D006487 2.6e-48 196.4 267 50.9
Cfa015266 Carpinus fangiana HOM05D005056 ORTHO05D006487 2.6e-48 196.4 169 65.7
HPP92_014516 Vanilla planifolia HOM05D005056 ORTHO05D006487 3.4e-48 196.1 253 49.0
C03p29070 Brassica napus HOM05D005056 ORTHO05D006487 4.4e-48 195.7 267 50.6
CDE04G2996 Ceratophyllum demersum HOM05D005056 ORTHO05D006487 7.5e-48 194.9 274 49.6
A03p24390 Brassica napus HOM05D005056 ORTHO05D006487 2.2e-47 193.4 265 49.1
Aqoxy5G00514 Aquilegia oxysepala HOM05D005056 ORTHO05D006487 6.4e-47 191.8 259 50.6
Lj1g0023120 Lotus japonicus HOM05D005056 ORTHO05D006487 2.4e-46 189.9 261 48.3
TPR.G1297 Trifolium pratense HOM05D005056 ORTHO05D006487 2.7e-45 186.4 229 51.5
Zm00001eb034060 Zea mays HOM05D005056 ORTHO05D006487 1.3e-44 184.1 260 46.5
BolC3t15261H Brassica oleracea HOM05D000026 ORTHO05D000094 1.9e-43 180.3 252 50.0
BraA03t11648Z Brassica rapa HOM05D005056 ORTHO05D006487 3.6e-42 176.0 251 48.2
AUR62016753 Chenopodium quinoa HOM05D005056 ORTHO05D006487 3.1e-41 172.9 263 47.5
Lj7A489T32 Lonicera japonica HOM05D005056 ORTHO05D006487 2.9e-39 166.4 183 58.5
Mapoly0041s0093 Marchantia polymorpha HOM05D005056 ORTHO05D006403 3.0e-36 156.4 266 39.5
AagrBONN_evm.TU.Sc2ySwM_228.4407 Anthoceros agrestis HOM05D005056 ORTHO05D006403 7.3e-35 151.8 269 41.3
ATR0763G045 Amborella trichopoda HOM05D005056 ORTHO05D006487 1.2e-34 151.0 177 49.2
Pp3c13_22260 Physcomitrium patens HOM05D005056 ORTHO05D006487 2.8e-34 149.8 262 42.4
BolC4t28563H Brassica oleracea HOM05D005056 ORTHO05D006487 3.4e-32 142.9 259 41.7
BraA04t18751Z Brassica rapa HOM05D005056 ORTHO05D006487 1.2e-29 134.4 160 53.8
AUR62016951 Chenopodium quinoa HOM05D005056 ORTHO05D006487 7.8e-29 131.7 263 40.7
SMO358G0450 Selaginella moellendorffii HOM05D005056 ORTHO05D006487 7.8e-29 131.7 254 39.8
A04p32930 Brassica napus HOM05D005056 ORTHO05D006487 1.7e-28 130.6 257 39.3
C04p70610 Brassica napus HOM05D005056 ORTHO05D006487 3.0e-28 129.8 259 40.5
AUR62011304 Chenopodium quinoa HOM05D005056 ORTHO05D006487 3.9e-28 129.4 261 38.7
FAN12G0411 Fragaria x ananassa HOM05D005056 ORTHO05D006487 5.1e-28 129.0 121 60.3
FAN12G0483 Fragaria x ananassa HOM05D005056 ORTHO05D006487 5.1e-28 129.0 121 60.3
FvH4_4g18081 Fragaria vesca HOM05D005056 ORTHO05D006487 1.9e-22 110.5 117 56.4
BcaB06g29334 Brassica carinata HOM05D005056 ORTHO05D006487 9.3e-22 108.2 196 41.8
SMO367G0368 Selaginella moellendorffii HOM05D005056 ORTHO05D006487 9.3e-22 108.2 255 34.9
AT3G28230 Arabidopsis thaliana HOM05D005056 ORTHO05D006487 1.0e-20 104.8 97 60.8
CBR_g34512 Chara braunii HOM05D005056 ORTHO05D006403 2.3e-20 103.6 195 40.0
AL5G17740 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 2.5e-19 100.1 99 59.6
Eucgr.H00313 Eucalyptus grandis HOM05D005056 ORTHO05D006487 5.6e-19 99.0 86 66.3
Thhalv10001371m.g Eutrema salsugineum HOM05D005056 ORTHO05D006487 2.1e-18 97.1 198 39.4
QL10p055605 Quercus lobata HOM05D005056 ORTHO05D006487 1.8e-17 94.0 105 53.3
MD04G1048900 Malus domestica HOM05D005056 ORTHO05D006487 2.4e-17 93.6 85 61.2
AL677U10020 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 1.3e-15 87.8 67 68.7
Oeu018046.1 Olea europaea HOM05D005056 ORTHO05D006487 2.2e-15 87.0 67 67.2
C04p70630 Brassica napus HOM05D005056 ORTHO05D006487 5.4e-14 82.4 99 50.5
BolC4t28565H Brassica oleracea HOM05D005056 ORTHO05D006487 5.4e-14 82.4 99 50.5
MCO16G233 Micromonas commoda HOM05D005594 ORTHO05D006403 9.3e-14 81.6 253 32.8
QL10p055599 Quercus lobata HOM05D005056 ORTHO05D006487 2.7e-13 80.1 75 57.3
A04p32940 Brassica napus HOM05D005056 ORTHO05D001240 1.8e-12 77.4 123 45.5
BcaC02g07158 Brassica carinata HOM05D000156 ORTHO05D004238 7.4e-11 72.0 204 34.3
BcaB06g29336 Brassica carinata HOM05D005056 ORTHO05D006487 4.5e-08 62.8 63 55.6


User provided reference genes

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