Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.785 Acer truncatum HOM05D000811 ORTHO05D004743 8.2e-62 240.4 133 100.0
Haze_03791 Corylus avellana HOM05D000811 ORTHO05D004743 5.0e-27 124.8 110 69.1
Cfa006960 Carpinus fangiana HOM05D000811 ORTHO05D007840 3.2e-26 122.1 110 68.2
BolC7t40891H Brassica oleracea HOM05D000811 ORTHO05D004743 2.3e-24 115.9 109 60.6
Gorai.011G099300 Gossypium raimondii HOM05D000811 ORTHO05D004743 6.8e-24 114.4 115 62.6
VMungo0289G0001 Vigna mungo HOM05D000811 ORTHO05D004743 6.8e-24 114.4 105 62.9
Gohir.D10G090300 Gossypium hirsutum HOM05D000811 ORTHO05D004743 8.8e-24 114.0 118 61.0
Sopen02g013220 Solanum pennellii HOM05D000811 ORTHO05D004743 1.5e-23 113.2 116 62.1
Eucgr.J02408 Eucalyptus grandis HOM05D000811 ORTHO05D004743 3.4e-23 112.1 119 62.2
Gohir.A10G097900 Gossypium hirsutum HOM05D000811 ORTHO05D004743 5.7e-23 111.3 121 59.5
Thecc.01G020900 Theobroma cacao HOM05D000811 ORTHO05D004743 7.5e-23 110.9 123 58.5
Duzib264G0600 Durio zibethinus HOM05D000811 ORTHO05D004743 2.2e-22 109.4 62 87.1
TAR625G0006 Trochodendron aralioides HOM05D000811 ORTHO05D004743 2.8e-22 109.0 106 65.1
Gohir.D11G044800 Gossypium hirsutum HOM05D000811 ORTHO05D004743 1.1e-21 107.1 66 81.8
Duzib187G1507 Durio zibethinus HOM05D000811 ORTHO05D004743 1.4e-21 106.7 62 85.5
Nitab4.5_0001133g0070 Nicotiana tabacum HOM05D000811 ORTHO05D004743 2.4e-21 105.9 111 59.5
COL.COLO4_21930 Corchorus olitorius HOM05D000811 ORTHO05D004743 3.1e-21 105.5 62 83.9
Duzib147G0350 Durio zibethinus HOM05D000811 ORTHO05D004743 3.1e-21 105.5 62 85.5
Gorai.007G048100 Gossypium raimondii HOM05D000811 ORTHO05D004743 7.0e-21 104.4 62 85.5
Lsat_1_v5_gn_2_78761 Lactuca sativa HOM05D000811 ORTHO05D004743 1.6e-20 103.2 62 79.0
Sabra07G0010400 Salix brachista HOM05D000811 ORTHO05D004743 2.0e-20 102.8 62 82.3
Potri.007G013400 Populus trichocarpa HOM05D000811 ORTHO05D004743 2.7e-20 102.4 62 80.6
PGR102G1785 Punica granatum HOM05D000811 ORTHO05D004743 2.7e-20 102.4 58 87.9
Actinidia31003 Actinidia chinensis HOM05D000811 ORTHO05D004743 3.5e-20 102.1 116 56.9
Lj4A217G58 Lonicera japonica HOM05D000811 ORTHO05D004743 3.5e-20 102.1 62 80.6
C06p13450 Brassica napus HOM05D000811 ORTHO05D004743 4.5e-20 101.7 102 60.8
BolC6t36506H Brassica oleracea HOM05D000811 ORTHO05D004743 4.5e-20 101.7 102 60.8
Ciclev10026785m.g Citrus clementina HOM05D000811 ORTHO05D004743 4.5e-20 101.7 58 86.2
HanXRQChr15g0482841 Helianthus annuus HOM05D000811 ORTHO05D004743 4.5e-20 101.7 60 80.0
Nn6g32304 Nelumbo nucifera HOM05D000811 ORTHO05D004743 4.5e-20 101.7 105 61.0
CiPaw.07G057300 Carya illinoinensis HOM05D000811 ORTHO05D004743 5.9e-20 101.3 62 82.3
Gohir.A11G041500 Gossypium hirsutum HOM05D000811 ORTHO05D004743 5.9e-20 101.3 62 82.3
Lalb_Chr16g0391191 Lupinus albus HOM05D000811 ORTHO05D004743 5.9e-20 101.3 104 57.7
QL06p033570 Quercus lobata HOM05D000811 ORTHO05D004743 5.9e-20 101.3 64 79.7
ECA238G1572 Erigeron canadensis HOM05D000811 ORTHO05D004743 7.7e-20 100.9 60 80.0
MD04G1047200 Malus domestica HOM05D000811 ORTHO05D004743 7.7e-20 100.9 60 81.7
Rhsim08G0034300 Rhododendron simsii HOM05D000811 ORTHO05D007840 7.7e-20 100.9 102 63.7
CSS0030860 Camellia sinensis var. sinensis HOM05D000811 ORTHO05D004743 1.0e-19 100.5 61 78.7
CiPaw.08G132800 Carya illinoinensis HOM05D000811 ORTHO05D004743 1.0e-19 100.5 61 82.0
Dinv41989 Davidia involucrata HOM05D000586 ORTHO05D003356 1.0e-19 100.5 57 82.5
Prupe.1G202600 Prunus persica HOM05D000811 ORTHO05D004743 1.0e-19 100.5 60 81.7
Sed0008902 Sechium edule HOM05D000811 ORTHO05D004743 1.0e-19 100.5 62 80.6
Lj4g0014424 Lotus japonicus HOM05D000811 ORTHO05D004743 1.3e-19 100.1 62 79.0
Actinidia27847 Actinidia chinensis HOM05D000811 ORTHO05D004743 1.7e-19 99.8 58 82.8
ClCG07G008440 Citrullus lanatus HOM05D000811 ORTHO05D004743 1.7e-19 99.8 62 79.0
Oeu062504.1 Olea europaea HOM05D000811 ORTHO05D004743 1.7e-19 99.8 63 79.4
Dinv40074 Davidia involucrata HOM05D000811 ORTHO05D004743 2.3e-19 99.4 57 84.2
MD08G1077500 Malus domestica HOM05D000811 ORTHO05D004743 2.3e-19 99.4 60 80.0
Lsat_1_v5_gn_3_74081 Lactuca sativa HOM05D000811 ORTHO05D004743 2.9e-19 99.0 60 78.3
Nn5g29274 Nelumbo nucifera HOM05D000811 ORTHO05D004743 2.9e-19 99.0 57 84.2
CAN.G1329.5 Capsicum annuum HOM05D000811 ORTHO05D004743 5.0e-19 98.2 58 77.6
Dinv23445 Davidia involucrata HOM05D000586 ORTHO05D003356 5.0e-19 98.2 57 80.7
Cpa.g.sc6.231 Carica papaya HOM05D000811 ORTHO05D004743 6.6e-19 97.8 58 82.8
CsaV3_4G005720 Cucumis sativus L. HOM05D000811 ORTHO05D004743 6.6e-19 97.8 62 79.0
Nitab4.5_0006862g0010 Nicotiana tabacum HOM05D000811 ORTHO05D004743 6.6e-19 97.8 61 78.7
MELO3C016378.2 Cucumis melo HOM05D000811 ORTHO05D004743 8.6e-19 97.4 62 77.4
HanXRQChr14g0441311 Helianthus annuus HOM05D000811 ORTHO05D004743 8.6e-19 97.4 60 75.0
TWI09G0609 Tripterygium wilfordii HOM05D000811 ORTHO05D004743 8.6e-19 97.4 58 81.0
Sed0024520 Sechium edule HOM05D000811 ORTHO05D004743 1.1e-18 97.1 62 79.0
Nitab4.5_0010885g0050 Nicotiana tabacum HOM05D000811 ORTHO05D004743 1.5e-18 96.7 57 78.9
Phvul.003G260800 Phaseolus vulgaris HOM05D000811 ORTHO05D004743 1.5e-18 96.7 62 74.2
PGSC0003DMG400001617 Solanum tuberosum HOM05D000811 ORTHO05D004743 1.5e-18 96.7 57 77.2
TAR381G1630 Trochodendron aralioides HOM05D000811 ORTHO05D004743 1.5e-18 96.7 57 80.7
vmacro18420 Vaccinium macrocarpon HOM05D000811 ORTHO05D004743 1.5e-18 96.7 59 78.0
Hma1.2p1_0258F.1_g104200 Hydrangea macrophylla HOM05D000811 ORTHO05D004743 1.9e-18 96.3 65 76.9
FAN09G3320 Fragaria x ananassa HOM05D000811 ORTHO05D004743 2.5e-18 95.9 58 79.3
DCAR_016616 Daucus carota HOM05D000811 ORTHO05D004743 3.3e-18 95.5 61 75.4
THA.LOC104819758 Tarenaya hassleriana HOM05D000811 ORTHO05D004743 3.3e-18 95.5 58 81.0
Aa31LG8G15220 Aethionema arabicum HOM05D000811 ORTHO05D004743 4.2e-18 95.1 58 79.3
arahy.Tifrunner.gnm1.ann1.66CB8L Arachis hypogaea HOM05D000811 ORTHO05D004743 4.2e-18 95.1 54 83.3
Dinv33618 Davidia involucrata HOM05D000811 ORTHO05D004743 4.2e-18 95.1 57 80.7
arahy.Tifrunner.gnm1.ann1.LCWP3I Arachis hypogaea HOM05D000811 ORTHO05D004743 5.5e-18 94.7 104 56.7
ECA246G0760 Erigeron canadensis HOM05D000811 ORTHO05D004743 5.5e-18 94.7 58 75.9
FvH4_6g24550 Fragaria vesca HOM05D000811 ORTHO05D004743 5.5e-18 94.7 58 77.6
FAN02G2932 Fragaria x ananassa HOM05D000811 ORTHO05D004743 5.5e-18 94.7 58 77.6
FAN05G0499 Fragaria x ananassa HOM05D000811 ORTHO05D004743 5.5e-18 94.7 58 77.6
FAN14G0683 Fragaria x ananassa HOM05D000811 ORTHO05D004743 5.5e-18 94.7 58 77.6
TAR628G0680 Trochodendron aralioides HOM05D000811 ORTHO05D004743 5.5e-18 94.7 57 78.9
arahy.Tifrunner.gnm1.ann1.T1352T Arachis hypogaea HOM05D000811 ORTHO05D004743 7.2e-18 94.4 67 74.6
Manes.01G144800 Manihot esculenta HOM05D000811 ORTHO05D004743 7.2e-18 94.4 58 79.3
Oeu035303.1 Olea europaea HOM05D000811 ORTHO05D004743 9.5e-18 94.0 61 77.0
Rhsim05G0067500 Rhododendron simsii HOM05D000811 ORTHO05D004743 9.5e-18 94.0 57 75.4
Manes.02G103000 Manihot esculenta HOM05D000811 ORTHO05D004743 1.2e-17 93.6 58 72.4
Solyc01g110530.3 Solanum lycopersicum HOM05D000811 ORTHO05D004743 1.2e-17 93.6 57 75.4
Sopen01g052660 Solanum pennellii HOM05D000811 ORTHO05D004743 1.2e-17 93.6 57 75.4
Glyma.16G129900 Glycine max HOM05D000811 ORTHO05D004743 1.6e-17 93.2 66 72.7
RcHm_v2.0_Chr3g0483651 Rosa chinensis HOM05D000811 ORTHO05D004743 1.6e-17 93.2 58 77.6
Glyma.02G049500 Glycine max HOM05D000811 ORTHO05D004743 2.1e-17 92.8 64 70.3
Peaxi162Scf00799g00517 Petunia axillaris HOM05D000811 ORTHO05D004743 2.1e-17 92.8 61 73.8
THA.LOC104807488 Tarenaya hassleriana HOM05D000811 ORTHO05D004743 2.1e-17 92.8 58 77.6
Cc07_g10610 Coffea canephora HOM05D000811 ORTHO05D004743 2.8e-17 92.4 61 73.8
Hund16485 Selenicereus undatus HOM05D000811 ORTHO05D004743 2.8e-17 92.4 58 74.1
TAR376G0878 Trochodendron aralioides HOM05D000811 ORTHO05D004743 2.8e-17 92.4 57 77.2
Hund14039 Selenicereus undatus HOM05D000811 ORTHO05D004743 3.6e-17 92.0 62 69.4
GSVIVG01018801001 Vitis vinifera HOM05D000811 ORTHO05D004743 3.6e-17 92.0 58 72.4
A07p02600 Brassica napus HOM05D000811 ORTHO05D004743 4.7e-17 91.7 58 75.9
BraA07t28059Z Brassica rapa HOM05D000811 ORTHO05D004743 4.7e-17 91.7 58 75.9
Lalb_Chr05g0229881 Lupinus albus HOM05D000811 ORTHO05D004743 4.7e-17 91.7 57 75.4
Peaxi162Scf00362g01151 Petunia axillaris HOM05D000811 ORTHO05D004743 4.7e-17 91.7 57 73.7
TWI53G1676 Tripterygium wilfordii HOM05D000811 ORTHO05D004743 4.7e-17 91.7 58 77.6
Aqoxy5G01449 Aquilegia oxysepala HOM05D000811 ORTHO05D004743 6.1e-17 91.3 57 73.7
BcaB08g34786 Brassica carinata HOM05D000811 ORTHO05D004743 6.1e-17 91.3 58 74.1
CARHR108530 Cardamine hirsuta HOM05D000811 ORTHO05D004743 6.1e-17 91.3 58 74.1
AUR62043613 Chenopodium quinoa HOM05D000811 ORTHO05D004743 6.1e-17 91.3 54 79.6
AUR62044455 Chenopodium quinoa HOM05D000811 ORTHO05D004743 6.1e-17 91.3 54 79.6
Thhalv10022913m.g Eutrema salsugineum HOM05D000811 ORTHO05D004743 6.1e-17 91.3 58 74.1
Sp3g31470 Schrenkiella parvula HOM05D000811 ORTHO05D004743 6.1e-17 91.3 58 74.1
vmacro17410 Vaccinium macrocarpon HOM05D000811 ORTHO05D004743 6.1e-17 91.3 57 73.7
Ah.03g141760 Amaranthus hybridus HOM05D000811 ORTHO05D004743 8.0e-17 90.9 67 68.7
AL3G51190 Arabidopsis lyrata HOM05D000811 ORTHO05D004743 8.0e-17 90.9 58 74.1
AT2G18040 Arabidopsis thaliana HOM05D000811 ORTHO05D004743 8.0e-17 90.9 58 74.1
SGA_v2.0_scaffold32G13256 Striga asiatica HOM05D000811 ORTHO05D004743 8.0e-17 90.9 58 72.4
Actinidia22989 Actinidia chinensis HOM05D000811 ORTHO05D004743 1.0e-16 90.5 51 82.4
BcaB03g16590 Brassica carinata HOM05D000811 ORTHO05D004743 1.0e-16 90.5 58 74.1
CSS0015066 Camellia sinensis var. sinensis HOM05D000811 ORTHO05D004743 1.0e-16 90.5 57 75.4
CSS0031839 Camellia sinensis var. sinensis HOM05D000811 ORTHO05D004743 1.0e-16 90.5 57 75.4
SGA_v2.0_scaffold58G20433 Striga asiatica HOM05D000811 ORTHO05D004743 1.0e-16 90.5 58 72.4
BcaC06g36361 Brassica carinata HOM05D000811 ORTHO05D004743 1.4e-16 90.1 58 74.1
A06p33380 Brassica napus HOM05D000811 ORTHO05D004743 1.4e-16 90.1 58 72.4
C07p04900 Brassica napus HOM05D000811 ORTHO05D004743 1.4e-16 90.1 58 74.1
PGSC0003DMG400019933 Solanum tuberosum HOM05D000811 ORTHO05D004743 1.4e-16 90.1 64 70.3
Carub.0003s3219 Capsella rubella HOM05D000811 ORTHO05D004743 1.8e-16 89.7 58 74.1
Solyc02g062250.3 Solanum lycopersicum HOM05D000811 ORTHO05D004743 2.3e-16 89.4 58 74.1
BraA06t26271Z Brassica rapa HOM05D000811 ORTHO05D004743 3.0e-16 89.0 58 70.7
HanXRQChr11g0327321 Helianthus annuus HOM05D000811 ORTHO05D004743 3.0e-16 89.0 59 69.5
CAN.G1365.1 Capsicum annuum HOM05D000811 ORTHO05D004743 4.0e-16 88.6 64 67.2
TPR.G30057 Trifolium pratense HOM05D000811 ORTHO05D004743 4.0e-16 88.6 61 72.1
C03p58940 Brassica napus HOM05D000811 ORTHO05D004743 5.2e-16 88.2 58 70.7
BolC3t18151H Brassica oleracea HOM05D000811 ORTHO05D004743 5.2e-16 88.2 58 70.7
EL10As8g23839 Beta vulgaris HOM05D000811 ORTHO05D004743 6.8e-16 87.8 54 77.8
MSTRG.5435 Avicennia marina HOM05D000811 ORTHO05D004743 8.9e-16 87.4 58 67.2
MBI04_g40115_MAGBIO Magnolia biondii HOM05D000811 ORTHO05D004743 8.9e-16 87.4 62 66.1
Oeu060412.1 Olea europaea HOM05D000811 ORTHO05D004743 8.9e-16 87.4 54 72.2
Migut.B00125 Erythranthe guttata HOM05D000811 ORTHO05D004743 1.2e-15 87.0 58 69.0
Medtr8g076070 Medicago truncatula HOM05D000811 ORTHO05D004743 1.2e-15 87.0 62 69.4
CDE05G3463 Ceratophyllum demersum HOM05D000811 ORTHO05D004743 1.5e-15 86.7 56 69.6
CDE02G4615 Ceratophyllum demersum HOM05D000811 ORTHO05D004743 2.6e-15 85.9 57 66.7
Migut.H01149 Erythranthe guttata HOM05D000811 ORTHO05D004743 2.6e-15 85.9 58 69.0
ATR0147G012 Amborella trichopoda HOM05D000811 ORTHO05D004743 3.4e-15 85.5 57 64.9
Psat4g098480 Pisum sativum HOM05D000811 ORTHO05D004743 5.7e-15 84.7 61 70.5
HPP92_003523 Vanilla planifolia HOM05D000811 ORTHO05D004743 7.5e-15 84.3 58 67.2
CDE09G0022 Ceratophyllum demersum HOM05D000811 ORTHO05D004743 9.8e-15 84.0 80 53.8
Sc16g0002050 Simmondsia chinensis HOM05D000811 ORTHO05D004743 9.8e-15 84.0 104 52.9
CDE05G3063 Ceratophyllum demersum HOM05D000811 ORTHO05D004743 1.3e-14 83.6 56 66.1
Ca_22371_v3 Cicer arietinum L. HOM05D000811 ORTHO05D004743 1.7e-14 83.2 64 68.8
unitig_0.g45 Utricularia gibba HOM05D000628 ORTHO05D001121 2.2e-14 82.8 53 71.7
SalBow3G3608 Salvia bowleyana HOM05D000811 ORTHO05D004743 2.8e-14 82.4 58 65.5
MSTRG.2701 Avicennia marina HOM05D000811 ORTHO05D004743 8.3e-14 80.9 57 63.2
arahy.Tifrunner.gnm1.ann1.9YI44J Arachis hypogaea HOM05D007334 ORTHO05D004743 1.1e-13 80.5 104 51.0
MBI07_g03816_MAGBIO Magnolia biondii HOM05D000811 ORTHO05D004743 1.8e-13 79.7 63 61.9
unitig_699.g19711 Utricularia gibba HOM05D000811 ORTHO05D004743 3.2e-13 79.0 99 45.5
Os04g0118500 Oryza sativa ssp. japonica HOM05D000811 ORTHO05D004743 4.1e-13 78.6 62 61.3
Pp3c20_23120 Physcomitrium patens HOM05D000811 ORTHO05D004743 4.1e-13 78.6 59 61.0
SMO146G0274 Selaginella moellendorffii HOM05D000811 ORTHO05D004743 7.0e-13 77.8 58 60.3
Pp3c10_25090 Physcomitrium patens HOM05D000811 ORTHO05D004743 9.2e-13 77.4 59 61.0
Zm00001eb419950 Zea mays HOM05D000811 ORTHO05D004743 1.2e-12 77.0 65 60.0
PSO210G3301 Papaver somniferum HOM05D000811 ORTHO05D004743 1.6e-12 76.6 59 61.0
Zm00001eb067280 Zea mays HOM05D000811 ORTHO05D004743 2.0e-12 76.3 58 62.1
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 1.7e-11 73.2 67 59.7
AagrBONN_evm.TU.Sc2ySwM_228.1572 Anthoceros agrestis HOM05D000811 ORTHO05D004743 2.9e-11 72.4 58 53.4
SEGI_07022 Sequoiadendron giganteum HOM05D000811 ORTHO05D004743 6.6e-11 71.2 65 55.4
PSO170G2420 Papaver somniferum HOM05D000811 ORTHO05D004743 1.1e-10 70.5 55 60.0
MBI05_g26504_MAGBIO Magnolia biondii HOM05D000811 ORTHO05D004743 4.3e-10 68.6 44 68.2
CBR_g552 Chara braunii HOM05D000811 ORTHO05D004743 5.6e-10 68.2 57 56.1
MCO04G419 Micromonas commoda HOM05D000811 ORTHO05D004743 9.5e-10 67.4 56 55.4
Actinidia00122 Actinidia chinensis HOM05D000811 ORTHO05D004743 1.6e-09 66.6 39 76.9
Actinidia20649 Actinidia chinensis HOM05D000811 ORTHO05D004743 1.6e-09 66.6 39 76.9
Ah.02g124500 Amaranthus hybridus HOM05D000811 ORTHO05D004743 1.0e-08 63.9 38 73.7
HPP92_002102 Vanilla planifolia HOM05D000811 ORTHO05D004743 1.0e-08 63.9 135 37.0
Nitab4.5_0002096g0060 Nicotiana tabacum HOM05D000811 ORTHO05D004743 3.1e-08 62.4 31 93.5


User provided reference genes

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