Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3772 Acer truncatum HOM05D008034 ORTHO05D010051 1.8e-107 392.5 184 100.0
Ciclev10029356m.g Citrus clementina HOM05D008034 ORTHO05D010051 1.6e-84 316.2 180 81.7
Manes.11G137800 Manihot esculenta HOM05D008034 ORTHO05D010051 7.5e-82 307.4 182 77.5
Thecc.09G333100 Theobroma cacao HOM05D008034 ORTHO05D010051 9.8e-82 307.0 181 77.9
QL01p035245 Quercus lobata HOM05D008034 ORTHO05D010051 4.9e-81 304.7 180 77.2
Duzib170G0117 Durio zibethinus HOM05D008034 ORTHO05D010051 3.5e-79 298.5 182 74.7
Actinidia37272 Actinidia chinensis HOM05D008034 ORTHO05D010051 6.0e-79 297.7 178 78.7
TWI75G0515 Tripterygium wilfordii HOM05D008034 ORTHO05D010051 8.6e-78 293.9 182 73.6
Actinidia27676 Actinidia chinensis HOM05D008034 ORTHO05D010051 1.1e-77 293.5 178 77.5
Gohir.D07G098700 Gossypium hirsutum HOM05D008034 ORTHO05D010051 1.5e-77 293.1 180 72.8
Gorai.001G106200 Gossypium raimondii HOM05D008034 ORTHO05D010051 1.5e-77 293.1 180 72.8
Gohir.A07G094200 Gossypium hirsutum HOM05D008034 ORTHO05D010051 3.3e-77 292.0 180 72.8
Prupe.6G089000 Prunus persica HOM05D008034 ORTHO05D010051 1.2e-76 290.0 178 75.8
COL.COLO4_18407 Corchorus olitorius HOM05D008034 ORTHO05D010051 5.2e-75 284.6 186 71.5
Cpa.g.sc139.12 Carica papaya HOM05D008034 ORTHO05D010051 1.2e-74 283.5 180 71.1
Phvul.008G100300 Phaseolus vulgaris HOM05D008034 ORTHO05D010051 1.5e-74 283.1 182 72.0
TAR623G1523 Trochodendron aralioides HOM05D008034 ORTHO05D010051 2.0e-74 282.7 194 69.1
FvH4_3g34350 Fragaria vesca HOM05D008034 ORTHO05D010051 9.9e-74 280.4 177 72.9
Glyma.18G177500 Glycine max HOM05D008034 ORTHO05D010051 3.7e-73 278.5 182 70.3
Cfa011409 Carpinus fangiana HOM05D008034 ORTHO05D010051 3.2e-72 275.4 182 70.3
Lalb_Chr03g0035081 Lupinus albus HOM05D008034 ORTHO05D010051 3.2e-72 275.4 182 71.4
GSVIVG01025076001 Vitis vinifera HOM05D008034 ORTHO05D010051 7.1e-72 274.2 175 72.0
CSS0025126 Camellia sinensis var. sinensis HOM05D008034 ORTHO05D010051 2.7e-71 272.3 155 81.9
Hma1.2p1_0035F.1_g021690 Hydrangea macrophylla HOM05D008034 ORTHO05D010051 4.6e-71 271.6 147 84.4
Rhsim13G0089800 Rhododendron simsii HOM05D001089 ORTHO05D000920 7.8e-71 270.8 160 78.8
RhsimUnG0139800 Rhododendron simsii HOM05D001089 ORTHO05D000920 1.0e-70 270.4 160 78.8
Lalb_Chr03g0042121 Lupinus albus HOM05D008034 ORTHO05D010051 2.3e-70 269.2 183 68.9
Medtr7g060450 Medicago truncatula HOM05D008034 ORTHO05D010051 8.6e-70 267.3 181 70.7
CiPaw.13G103300 Carya illinoinensis HOM05D008034 ORTHO05D010051 1.1e-69 266.9 181 69.1
Nitab4.5_0007786g0020 Nicotiana tabacum HOM05D008034 ORTHO05D010051 1.1e-69 266.9 180 72.2
CAN.G84.9 Capsicum annuum HOM05D008034 ORTHO05D010051 2.5e-69 265.8 165 74.5
arahy.Tifrunner.gnm1.ann1.JRZ5DE Arachis hypogaea HOM05D008034 ORTHO05D010051 7.3e-69 264.2 161 75.8
Psat3g140960 Pisum sativum HOM05D008034 ORTHO05D010051 1.2e-68 263.5 179 68.7
arahy.Tifrunner.gnm1.ann1.YB7TH1 Arachis hypogaea HOM05D008034 ORTHO05D010051 6.2e-68 261.2 161 75.2
ClCG02G020510 Citrullus lanatus HOM05D008034 ORTHO05D010051 6.8e-67 257.7 174 69.0
Glyma.08G359000 Glycine max HOM05D008034 ORTHO05D010051 8.9e-67 257.3 180 67.2
CsaV3_6G021950 Cucumis sativus L. HOM05D008034 ORTHO05D010051 3.4e-66 255.4 181 68.5
Nn2g10576 Nelumbo nucifera HOM05D008034 ORTHO05D010051 4.4e-66 255.0 190 64.7
Nitab4.5_0002380g0020 Nicotiana tabacum HOM05D008034 ORTHO05D010051 4.4e-66 255.0 177 69.5
Solyc11g072765.1 Solanum lycopersicum HOM05D008034 ORTHO05D010051 1.3e-65 253.4 155 72.9
Haze_23982 Corylus avellana HOM05D008034 ORTHO05D010051 2.2e-65 252.7 153 73.9
FAN11G2200 Fragaria x ananassa HOM05D008034 ORTHO05D010051 8.4e-65 250.8 164 70.7
Aqoxy4G03114 Aquilegia oxysepala HOM05D008034 ORTHO05D010051 1.4e-64 250.0 178 65.2
MELO3C025715.2 Cucumis melo HOM05D008034 ORTHO05D010051 9.3e-64 247.3 144 77.8
HanXRQChr08g0230621 Helianthus annuus HOM05D008034 ORTHO05D010051 1.2e-63 246.9 152 72.4
ECA247G3899 Erigeron canadensis HOM05D008034 ORTHO05D010051 1.0e-62 243.8 152 70.4
CANSAT54G0614 Cannabis sativa HOM05D008034 ORTHO05D010051 1.3e-62 243.4 183 61.7
Lsat_1_v5_gn_9_21900 Lactuca sativa HOM05D008034 ORTHO05D010051 2.3e-62 242.7 191 61.8
Eucgr.B02437 Eucalyptus grandis HOM05D008034 ORTHO05D010051 3.0e-62 242.3 172 65.7
Sed0016706 Sechium edule HOM05D008034 ORTHO05D010051 3.0e-62 242.3 168 67.9
VMungo1383G3175 Vigna mungo HOM05D008034 ORTHO05D010051 1.5e-61 240.0 186 62.9
PSO729G0256 Papaver somniferum HOM05D008034 ORTHO05D010051 4.8e-60 235.0 186 61.8
PSO724G0148 Papaver somniferum HOM05D008034 ORTHO05D010051 1.8e-59 233.0 186 60.8
AUR62009660 Chenopodium quinoa HOM05D008034 ORTHO05D010051 7.6e-58 227.6 152 67.1
EL10Ac7g15930 Beta vulgaris HOM05D008034 ORTHO05D010051 5.4e-56 221.5 187 55.6
Ah.15g096410 Amaranthus hybridus HOM05D008034 ORTHO05D010051 3.5e-55 218.8 150 63.3
ATR0594G086 Amborella trichopoda HOM05D008034 ORTHO05D010051 7.3e-53 211.1 147 65.3
MBI14_g16339_MAGBIO Magnolia biondii HOM05D008034 ORTHO05D010051 7.3e-53 211.1 184 56.5
PGR102G1024 Punica granatum HOM05D008034 ORTHO05D010051 9.6e-53 210.7 185 53.5
Dinv06338 Davidia involucrata HOM05D008034 ORTHO05D010051 1.4e-48 196.8 181 54.7
TPR.G23264 Trifolium pratense HOM05D008034 ORTHO05D010051 5.4e-48 194.9 139 64.7
PSO416G0003 Papaver somniferum HOM05D008034 ORTHO05D010051 2.1e-44 183.0 146 62.3
AUR62001862 Chenopodium quinoa HOM05D008034 ORTHO05D010051 4.0e-43 178.7 154 54.5
Sc21g0005330 Simmondsia chinensis HOM05D008034 ORTHO05D010051 4.5e-42 175.3 113 67.3
Sopen11g030440 Solanum pennellii HOM05D008034 ORTHO05D010051 3.5e-31 139.0 81 71.6
SEGI_07630 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 3.8e-25 119.0 160 40.6
SEGI_26238 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 7.2e-24 114.8 144 43.1
SEGI_39089 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 7.2e-24 114.8 144 43.1
MD07G1183300 Malus domestica HOM05D008034 ORTHO05D010051 1.2e-23 114.0 160 38.8
ATR0594G007 Amborella trichopoda HOM05D001120 ORTHO05D010051 6.1e-23 111.7 140 42.9
TAR369G0105 Trochodendron aralioides HOM05D008034 ORTHO05D010051 7.9e-23 111.3 145 40.0
RcHm_v2.0_Chr1g0364691 Rosa chinensis HOM05D008034 ORTHO05D010051 1.0e-22 110.9 137 42.3
FAN06G3907 Fragaria x ananassa HOM05D001787 ORTHO05D007379 3.9e-22 109.0 159 39.6
FAN06G2736 Fragaria x ananassa HOM05D001787 ORTHO05D007379 5.1e-22 108.6 158 39.9
FAN10G0756 Fragaria x ananassa HOM05D001787 ORTHO05D007379 6.7e-22 108.2 159 39.6
FAN03G1672 Fragaria x ananassa HOM05D001787 ORTHO05D007379 1.1e-21 107.5 158 39.9
FAN01G1155 Fragaria x ananassa HOM05D001787 ORTHO05D007379 2.0e-21 106.7 159 39.6
FAN01G1685 Fragaria x ananassa HOM05D001787 ORTHO05D007379 2.0e-21 106.7 159 39.6
FvH4_7g20661 Fragaria vesca HOM05D008034 ORTHO05D010051 2.5e-21 106.3 137 41.6
Potri.010G214400 Populus trichocarpa HOM05D008034 ORTHO05D010051 5.7e-21 105.1 135 40.7
Cpa.g.sc10.57 Carica papaya HOM05D001787 ORTHO05D007379 1.3e-20 104.0 155 36.1
Nn2g10579 Nelumbo nucifera HOM05D001120 ORTHO05D010051 2.2e-20 103.2 164 36.6
Prupe.2G222000 Prunus persica HOM05D001120 ORTHO05D010051 8.2e-20 101.3 137 42.3
Manes.07G106000 Manihot esculenta HOM05D008034 ORTHO05D002447 1.5e-18 97.1 149 38.9
MBI14_g46136_MAGBIO Magnolia biondii HOM05D001120 ORTHO05D002447 2.6e-18 96.3 137 40.9
Rhsim08G0214400 Rhododendron simsii HOM05D000250 ORTHO05D002477 6.1e-15 85.1 150 34.0
Glyma.10G242000 Glycine max HOM05D001120 ORTHO05D002447 7.9e-15 84.7 147 30.6
SEGI_17058 Sequoiadendron giganteum HOM05D001120 ORTHO05D002447 7.9e-15 84.7 146 32.9
CANSAT56G0855 Cannabis sativa HOM05D001120 ORTHO05D002447 1.4e-14 84.0 138 30.4
Medtr1g102420 Medicago truncatula HOM05D001120 ORTHO05D002447 1.4e-14 84.0 149 28.2
TWI23G0455 Tripterygium wilfordii HOM05D001120 ORTHO05D002447 1.4e-14 84.0 147 29.3
Duzib235G0839 Durio zibethinus HOM05D001120 ORTHO05D002447 1.8e-14 83.6 138 31.9
THA.LOC104815278 Tarenaya hassleriana HOM05D001120 ORTHO05D002447 2.3e-14 83.2 133 33.8
vmacro18984 Vaccinium macrocarpon HOM05D001120 ORTHO05D002447 2.3e-14 83.2 171 31.0
Rhsim08G0214200 Rhododendron simsii HOM05D001120 ORTHO05D002447 3.0e-14 82.8 138 31.9
Potri.018G131800 Populus trichocarpa HOM05D001120 ORTHO05D002447 3.9e-14 82.4 134 31.3
Aqoxy7G03703 Aquilegia oxysepala HOM05D001120 ORTHO05D002447 5.1e-14 82.0 139 31.7
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 5.1e-14 82.0 132 34.1
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 5.1e-14 82.0 132 34.1
TPR.G26127 Trifolium pratense HOM05D001120 ORTHO05D002447 5.1e-14 82.0 145 29.7
Duzib192G0269 Durio zibethinus HOM05D001120 ORTHO05D002447 6.7e-14 81.6 141 30.5
Cpa.g.sc75.26 Carica papaya HOM05D001120 ORTHO05D002447 1.1e-13 80.9 144 31.9
Ca_10832_v3 Cicer arietinum L. HOM05D001120 ORTHO05D002447 1.1e-13 80.9 145 28.3
Manes.14G132300 Manihot esculenta HOM05D001120 ORTHO05D002447 1.1e-13 80.9 132 31.1
Sp6g35710 Schrenkiella parvula HOM05D001120 ORTHO05D002447 1.1e-13 80.9 167 28.1
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.0e-13 80.1 141 31.2
Haze_16964 Corylus avellana HOM05D008034 ORTHO05D010051 2.6e-13 79.7 143 34.3
Lj2g0018359 Lotus japonicus HOM05D001120 ORTHO05D002447 2.6e-13 79.7 143 29.4
Prupe.3G084200 Prunus persica HOM05D001120 ORTHO05D002447 2.6e-13 79.7 141 27.7
Lalb_Chr06g0160841 Lupinus albus HOM05D001120 ORTHO05D002447 3.3e-13 79.3 148 29.1
Potri.006G069800 Populus trichocarpa HOM05D001120 ORTHO05D002447 3.3e-13 79.3 132 31.1
Thecc.06G021100 Theobroma cacao HOM05D001120 ORTHO05D002447 3.3e-13 79.3 138 31.9
Gohir.A05G125700 Gossypium hirsutum HOM05D001120 ORTHO05D002447 4.4e-13 79.0 133 32.3
Gohir.D05G126700 Gossypium hirsutum HOM05D001120 ORTHO05D002447 4.4e-13 79.0 133 32.3
Gorai.009G130700 Gossypium raimondii HOM05D001120 ORTHO05D002447 4.4e-13 79.0 133 32.3
VMungo0464G0837 Vigna mungo HOM05D001120 ORTHO05D002447 5.7e-13 78.6 143 30.8
Sed0010780 Sechium edule HOM05D001120 ORTHO05D002447 7.4e-13 78.2 137 28.5
Ciclev10005897m.g Citrus clementina HOM05D001120 ORTHO05D002447 9.7e-13 77.8 143 32.9
MD00G1023000 Malus domestica HOM05D001120 ORTHO05D002447 9.7e-13 77.8 142 26.1
Phvul.004G125300 Phaseolus vulgaris HOM05D001120 ORTHO05D002447 9.7e-13 77.8 143 30.1
BcaC06g32466 Brassica carinata HOM05D001120 ORTHO05D002447 1.3e-12 77.4 139 30.9
Glyma.16G202000 Glycine max HOM05D001120 ORTHO05D002447 2.2e-12 76.6 149 28.9
Sopen01g046430 Solanum pennellii HOM05D001120 ORTHO05D002447 3.7e-12 75.9 134 33.6
PGSC0003DMG400023798 Solanum tuberosum HOM05D001120 ORTHO05D002447 3.7e-12 75.9 134 30.6
Solyc01g104020.2 Solanum lycopersicum HOM05D001120 ORTHO05D002447 4.8e-12 75.5 134 30.6
Migut.I00781 Erythranthe guttata HOM05D001120 ORTHO05D002447 6.3e-12 75.1 138 29.0
Glyma.16G202500 Glycine max HOM05D001120 ORTHO05D002447 6.3e-12 75.1 149 28.9
Os01g0172800 Oryza sativa ssp. japonica HOM05D001120 ORTHO05D002447 6.3e-12 75.1 133 34.6
Cc04_g04230 Coffea canephora HOM05D001120 ORTHO05D002447 8.2e-12 74.7 135 31.1
Sabra06G0052100 Salix brachista HOM05D001120 ORTHO05D002447 1.1e-11 74.3 132 30.3
SEGI_18751 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 1.1e-11 74.3 156 27.6
Glyma.09G151900 Glycine max HOM05D001120 ORTHO05D002447 1.4e-11 73.9 138 29.0
Lalb_Chr03g0033001 Lupinus albus HOM05D001120 ORTHO05D002447 1.4e-11 73.9 145 28.3
Nn2g12032 Nelumbo nucifera HOM05D001120 ORTHO05D002447 1.4e-11 73.9 133 30.8
PGSC0003DMG400023797 Solanum tuberosum HOM05D001120 ORTHO05D002447 1.4e-11 73.9 134 32.8
Medtr0050s0240 Medicago truncatula HOM05D001120 ORTHO05D002447 1.8e-11 73.6 141 29.1
CAN.G798.15 Capsicum annuum HOM05D001120 ORTHO05D002447 2.4e-11 73.2 144 30.6
Lalb_Chr03g0033011 Lupinus albus HOM05D001120 ORTHO05D002447 2.4e-11 73.2 145 28.3
Os05g0171200 Oryza sativa ssp. japonica HOM05D001120 ORTHO05D002447 2.4e-11 73.2 136 34.6
Sopen01g046420 Solanum pennellii HOM05D001120 ORTHO05D002447 2.4e-11 73.2 134 29.9
Psat1g115720 Pisum sativum HOM05D001120 ORTHO05D002447 3.1e-11 72.8 136 29.4
unitig_22.g6612 Utricularia gibba HOM05D001120 ORTHO05D002447 3.1e-11 72.8 137 29.2
CsaV3_4G001510 Cucumis sativus L. HOM05D001120 ORTHO05D002447 4.1e-11 72.4 137 27.0
Carub.0006s0612 Capsella rubella HOM05D001120 ORTHO05D002447 5.3e-11 72.0 141 27.7
Aqoxy7G02184 Aquilegia oxysepala HOM05D001120 ORTHO05D002447 9.1e-11 71.2 130 28.5
Phvul.004G125400 Phaseolus vulgaris HOM05D001120 ORTHO05D002447 9.1e-11 71.2 139 30.2
FAN02G1869 Fragaria x ananassa HOM05D001120 ORTHO05D002447 1.2e-10 70.9 134 26.9
FvH4_6g29960 Fragaria vesca HOM05D001120 ORTHO05D002447 1.6e-10 70.5 134 26.9
Lalb_Chr22g0350891 Lupinus albus HOM05D001120 ORTHO05D002447 1.6e-10 70.5 138 28.3
AL6G17410 Arabidopsis lyrata HOM05D001120 ORTHO05D002447 2.0e-10 70.1 142 28.9
CARHR205960 Cardamine hirsuta HOM05D001120 ORTHO05D002447 2.6e-10 69.7 137 30.7
SEGI_22870 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 2.6e-10 69.7 156 26.9
MELO3C017889.2 Cucumis melo HOM05D001120 ORTHO05D002447 3.5e-10 69.3 132 28.0
RcHm_v2.0_Chr2g0135961 Rosa chinensis HOM05D001120 ORTHO05D002447 3.5e-10 69.3 134 27.6
AT5G07190 Arabidopsis thaliana HOM05D001120 ORTHO05D002447 5.9e-10 68.6 144 27.8
arahy.Tifrunner.gnm1.ann1.LIRE4J Arachis hypogaea HOM05D001120 ORTHO05D002447 5.9e-10 68.6 144 27.1
arahy.Tifrunner.gnm1.ann1.LMQR93 Arachis hypogaea HOM05D001120 ORTHO05D002447 5.9e-10 68.6 144 27.1
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 5.9e-10 68.6 138 28.3
SEGI_12405 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 5.9e-10 68.6 143 25.2
CAN.G407.95 Capsicum annuum HOM05D001120 ORTHO05D002447 1.0e-09 67.8 135 27.4
ClCG07G012680 Citrullus lanatus HOM05D001120 ORTHO05D002447 1.3e-09 67.4 132 26.5
CsaV3_3G016450 Cucumis sativus L. HOM05D001120 ORTHO05D002447 1.3e-09 67.4 132 27.3
Lalb_Chr19g0131251 Lupinus albus HOM05D001120 ORTHO05D002447 2.2e-09 66.6 139 28.8
Sed0008007 Sechium edule HOM05D001120 ORTHO05D002447 2.9e-09 66.2 143 25.2
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 3.8e-09 65.9 131 28.2
Medtr2g103303 Medicago truncatula HOM05D001120 ORTHO05D002447 6.5e-09 65.1 139 28.8
arahy.Tifrunner.gnm1.ann1.1FS32P Arachis hypogaea HOM05D001120 ORTHO05D002447 8.5e-09 64.7 134 28.4
arahy.Tifrunner.gnm1.ann1.3J2MYH Arachis hypogaea HOM05D001120 ORTHO05D002447 8.5e-09 64.7 134 28.4
MBI14_g16338_MAGBIO Magnolia biondii HOM05D008034 ORTHO05D002447 2.5e-08 63.2 127 36.2
Solyc03g116590.3 Solanum lycopersicum HOM05D001120 ORTHO05D002447 3.2e-08 62.8 135 25.9
Sopen03g035500 Solanum pennellii HOM05D001120 ORTHO05D002447 3.2e-08 62.8 135 25.9
Potri.015G132900 Populus trichocarpa HOM05D001120 ORTHO05D002447 5.5e-08 62.0 133 30.1
Migut.K00480 Erythranthe guttata HOM05D001120 ORTHO05D002447 1.0e-06 57.8 154 23.4


User provided reference genes

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