Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3516 Acer truncatum HOM05D005378 ORTHO05D006986 2.0e-36 155.2 75 100.0
Atru.chr7.434 Acer truncatum HOM05D005378 ORTHO05D006986 5.0e-32 140.6 75 93.3
Atru.chr9.1492 Acer truncatum HOM05D005378 ORTHO05D006986 3.7e-27 124.4 63 93.7
THA.LOC104818281 Tarenaya hassleriana HOM05D005378 ORTHO05D006986 7.0e-26 120.2 63 88.9
Atru.chr3.15 Acer truncatum HOM05D000534 ORTHO05D000389 1.5e-25 119.0 62 95.2
Solyc08g079830.4 Solanum lycopersicum HOM05D005378 ORTHO05D006986 1.5e-25 119.0 63 87.3
PGSC0003DMG400003914 Solanum tuberosum HOM05D005378 ORTHO05D006986 1.5e-25 119.0 63 87.3
FvH4_5g01090 Fragaria vesca HOM05D005378 ORTHO05D006986 2.6e-25 118.2 63 87.3
FAN08G1559 Fragaria x ananassa HOM05D005378 ORTHO05D006986 2.6e-25 118.2 63 87.3
FAN18G4319 Fragaria x ananassa HOM05D005378 ORTHO05D006986 2.6e-25 118.2 63 87.3
CAN.G630.23 Capsicum annuum HOM05D005378 ORTHO05D006986 3.5e-25 117.9 63 85.7
Nitab4.5_0012494g0030 Nicotiana tabacum HOM05D005378 ORTHO05D006986 3.5e-25 117.9 63 85.7
Nitab4.5_0005167g0010 Nicotiana tabacum HOM05D005378 ORTHO05D006986 7.7e-25 116.7 63 84.1
Sopen08g028190 Solanum pennellii HOM05D005378 ORTHO05D006986 7.7e-25 116.7 63 85.7
Peaxi162Scf00620g00241 Petunia axillaris HOM05D005378 ORTHO05D006986 1.0e-24 116.3 63 84.1
RcHm_v2.0_Chr7g0200231 Rosa chinensis HOM05D005378 ORTHO05D006986 1.0e-24 116.3 63 85.7
AL1G23870 Arabidopsis lyrata HOM05D005378 ORTHO05D006986 2.2e-24 115.2 72 75.0
Ciclev10021134m.g Citrus clementina HOM05D005378 ORTHO05D006986 2.2e-24 115.2 63 82.5
CsaV3_3G003410 Cucumis sativus L. HOM05D005378 ORTHO05D006986 2.2e-24 115.2 63 82.5
Phvul.003G217000 Phaseolus vulgaris HOM05D005378 ORTHO05D006986 2.9e-24 114.8 63 84.1
Rhsim10G0118700 Rhododendron simsii HOM05D005378 ORTHO05D006986 2.9e-24 114.8 63 84.1
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 3.8e-24 114.4 73 79.5
Glyma.05G055000 Glycine max HOM05D005378 ORTHO05D006986 3.8e-24 114.4 63 82.5
Lalb_Chr05g0225201 Lupinus albus HOM05D005378 ORTHO05D006986 3.8e-24 114.4 63 82.5
MD04G1072900 Malus domestica HOM05D005378 ORTHO05D006986 3.8e-24 114.4 63 84.1
Psat4g069440 Pisum sativum HOM05D005378 ORTHO05D006986 3.8e-24 114.4 63 82.5
Sed0008997 Sechium edule HOM05D005378 ORTHO05D006986 3.8e-24 114.4 63 84.1
AT1G12520 Arabidopsis thaliana HOM05D005378 ORTHO05D006986 5.0e-24 114.0 63 84.1
BcaB03g13183 Brassica carinata HOM05D005378 ORTHO05D006986 5.0e-24 114.0 63 84.1
A08p32790 Brassica napus HOM05D005378 ORTHO05D006986 5.0e-24 114.0 63 84.1
C08p15470 Brassica napus HOM05D005378 ORTHO05D006986 5.0e-24 114.0 63 84.1
BolC8t49175H Brassica oleracea HOM05D005378 ORTHO05D006986 5.0e-24 114.0 63 84.1
BraA08t35202Z Brassica rapa HOM05D005378 ORTHO05D006986 5.0e-24 114.0 63 84.1
CANSAT21G0731 Cannabis sativa HOM05D005378 ORTHO05D006986 5.0e-24 114.0 63 82.5
Carub.0001s1221 Capsella rubella HOM05D005378 ORTHO05D006986 5.0e-24 114.0 63 84.1
Eucgr.E00505 Eucalyptus grandis HOM05D005378 ORTHO05D006986 5.0e-24 114.0 63 81.0
Thhalv10008232m.g Eutrema salsugineum HOM05D005378 ORTHO05D006986 5.0e-24 114.0 63 84.1
CARHR012800 Cardamine hirsuta HOM05D005378 ORTHO05D006986 6.5e-24 113.6 72 73.6
Potri.003G118400 Populus trichocarpa HOM05D005378 ORTHO05D006986 6.5e-24 113.6 63 84.1
VMungo0251G1120 Vigna mungo HOM05D005378 ORTHO05D006986 8.5e-24 113.2 63 82.5
arahy.Tifrunner.gnm1.ann1.1K1ZSN Arachis hypogaea HOM05D005378 ORTHO05D006986 1.1e-23 112.8 63 82.5
arahy.Tifrunner.gnm1.ann1.2GQ0W5 Arachis hypogaea HOM05D005378 ORTHO05D006986 1.1e-23 112.8 63 82.5
Prupe.5G084900 Prunus persica HOM05D005378 ORTHO05D006986 1.1e-23 112.8 63 84.1
TPR.G37594 Trifolium pratense HOM05D005378 ORTHO05D006986 1.1e-23 112.8 63 81.0
TAR629G1125 Trochodendron aralioides HOM05D005378 ORTHO05D006986 1.1e-23 112.8 63 82.5
Cfa012056 Carpinus fangiana HOM05D005378 ORTHO05D006986 1.4e-23 112.5 63 81.0
Haze_09001 Corylus avellana HOM05D005378 ORTHO05D006986 1.4e-23 112.5 63 81.0
Lj4g0009345 Lotus japonicus HOM05D005378 ORTHO05D006986 1.4e-23 112.5 63 81.0
Ca_12295_v3 Cicer arietinum L. HOM05D005378 ORTHO05D006986 1.9e-23 112.1 63 81.0
Cc08_g13620 Coffea canephora HOM05D005378 ORTHO05D006986 2.5e-23 111.7 63 81.0
MD00G1069800 Malus domestica HOM05D005378 ORTHO05D006986 2.5e-23 111.7 63 81.0
Medtr4g101820 Medicago truncatula HOM05D005378 ORTHO05D006986 2.5e-23 111.7 63 79.4
Cpa.g.sc29.47 Carica papaya HOM05D005378 ORTHO05D006986 3.2e-23 111.3 63 81.0
Sp1g11100 Schrenkiella parvula HOM05D005378 ORTHO05D006986 3.2e-23 111.3 63 82.5
Nn6g34347 Nelumbo nucifera HOM05D005378 ORTHO05D006986 4.2e-23 110.9 63 82.5
Sc01g0008970 Simmondsia chinensis HOM05D005378 ORTHO05D006986 4.2e-23 110.9 63 81.0
QL12p016275 Quercus lobata HOM05D005378 ORTHO05D006986 5.5e-23 110.5 63 79.4
Aa31LG2G450 Aethionema arabicum HOM05D005378 ORTHO05D006986 7.2e-23 110.2 63 81.0
ATR0757G076 Amborella trichopoda HOM05D005378 ORTHO05D006986 7.2e-23 110.2 63 82.5
Oeu001912.1 Olea europaea HOM05D005378 ORTHO05D006986 7.2e-23 110.2 63 79.4
CiPaw.11G143700 Carya illinoinensis HOM05D005378 ORTHO05D006986 9.4e-23 109.8 63 77.8
Manes.02G028800 Manihot esculenta HOM05D005378 ORTHO05D006986 9.4e-23 109.8 63 79.4
Potri.001G113800 Populus trichocarpa HOM05D005378 ORTHO05D006986 9.4e-23 109.8 63 82.5
PGR031G2614 Punica granatum HOM05D005378 ORTHO05D006986 9.4e-23 109.8 63 77.8
Actinidia14494 Actinidia chinensis HOM05D005378 ORTHO05D006986 1.2e-22 109.4 63 79.4
CSS0049222 Camellia sinensis var. sinensis HOM05D005378 ORTHO05D006986 1.2e-22 109.4 62 82.3
SalBow6G7208 Salvia bowleyana HOM05D005378 ORTHO05D006986 1.2e-22 109.4 63 79.4
MSTRG.25561 Avicennia marina HOM05D005378 ORTHO05D006986 1.6e-22 109.0 63 79.4
Migut.A00880 Erythranthe guttata HOM05D005378 ORTHO05D006986 1.6e-22 109.0 63 77.8
PGR042G0099 Punica granatum HOM05D005378 ORTHO05D006986 1.6e-22 109.0 63 76.2
Thecc.03G266200 Theobroma cacao HOM05D005378 ORTHO05D006986 2.1e-22 108.6 63 81.0
BcaC07g41696 Brassica carinata HOM05D005378 ORTHO05D006986 2.7e-22 108.2 63 81.0
C08p47320 Brassica napus HOM05D005378 ORTHO05D006986 2.7e-22 108.2 63 81.0
BolC8t52274H Brassica oleracea HOM05D005378 ORTHO05D006986 2.7e-22 108.2 63 81.0
Dinv37717 Davidia involucrata HOM05D005378 ORTHO05D006986 2.7e-22 108.2 63 81.0
Duzib205G1930 Durio zibethinus HOM05D005378 ORTHO05D006986 2.7e-22 108.2 63 77.8
Gohir.A08G176000 Gossypium hirsutum HOM05D005378 ORTHO05D006986 3.6e-22 107.8 63 79.4
Gohir.D08G194800 Gossypium hirsutum HOM05D005378 ORTHO05D006986 3.6e-22 107.8 63 79.4
Gorai.004G205500 Gossypium raimondii HOM05D005378 ORTHO05D006986 3.6e-22 107.8 63 79.4
Sabra03G0082400 Salix brachista HOM05D005378 ORTHO05D006986 3.6e-22 107.8 63 81.0
SGA_v2.0_scaffold37G14872 Striga asiatica HOM05D005378 ORTHO05D006986 4.7e-22 107.5 63 76.2
BcaB08g34272 Brassica carinata HOM05D005378 ORTHO05D006986 6.1e-22 107.1 63 79.4
Hma1.2p1_2135F.1_g314860 Hydrangea macrophylla HOM05D005378 ORTHO05D006986 6.1e-22 107.1 63 77.8
Sabra01G0087000 Salix brachista HOM05D005378 ORTHO05D006986 6.1e-22 107.1 63 81.0
Aqoxy7G00527 Aquilegia oxysepala HOM05D005378 ORTHO05D006986 8.0e-22 106.7 63 76.2
HanXRQChr02g0047721 Helianthus annuus HOM05D005378 ORTHO05D006986 8.0e-22 106.7 63 79.4
SEGI_32640 Sequoiadendron giganteum HOM05D005378 ORTHO05D006986 8.0e-22 106.7 63 77.8
TWI60G1116 Tripterygium wilfordii HOM05D005378 ORTHO05D006986 8.0e-22 106.7 63 74.6
PSO782G2812 Papaver somniferum HOM05D005378 ORTHO05D006986 1.0e-21 106.3 63 77.8
GSVIVG01019902001 Vitis vinifera HOM05D005378 ORTHO05D006986 1.0e-21 106.3 63 79.4
DCAR_006775 Daucus carota HOM05D005378 ORTHO05D006986 1.4e-21 105.9 63 76.2
PSO478G1428 Papaver somniferum HOM05D005378 ORTHO05D006986 1.4e-21 105.9 63 77.8
MSTRG.12037 Avicennia marina HOM05D005378 ORTHO05D006986 1.8e-21 105.5 63 76.2
A09p63820 Brassica napus HOM05D005378 ORTHO05D006986 3.0e-21 104.8 63 77.8
BraA09t41728Z Brassica rapa HOM05D005378 ORTHO05D006986 3.0e-21 104.8 63 77.8
Hund14698 Selenicereus undatus HOM05D005378 ORTHO05D006986 3.0e-21 104.8 63 77.8
Ah.12g057930 Amaranthus hybridus HOM05D005378 ORTHO05D006986 6.7e-21 103.6 63 76.2
ECA233G4179 Erigeron canadensis HOM05D005378 ORTHO05D006986 6.7e-21 103.6 63 77.8
Lsat_1_v5_gn_6_10640 Lactuca sativa HOM05D005378 ORTHO05D006986 1.1e-20 102.8 63 76.2
FAN13G1015 Fragaria x ananassa HOM05D005378 ORTHO05D006986 1.5e-20 102.4 63 79.4
Atru.chr5.2888 Acer truncatum HOM05D005378 ORTHO05D037884 2.6e-20 101.7 58 84.5
unitig_744.g24326 Utricularia gibba HOM05D005378 ORTHO05D006986 3.3e-20 101.3 63 69.8
ClCG00G000130 Citrullus lanatus HOM05D005378 ORTHO05D006986 7.4e-20 100.1 63 76.2
ClCG10G003380 Citrullus lanatus HOM05D005378 ORTHO05D006986 7.4e-20 100.1 63 76.2
Oeu001910.1 Olea europaea HOM05D005378 ORTHO05D006986 1.7e-19 99.0 63 71.4
Zm00001eb073490 Zea mays HOM05D005378 ORTHO05D006986 1.7e-19 99.0 63 73.0
EL10Ac5g12674 Beta vulgaris HOM05D005378 ORTHO05D006986 2.2e-19 98.6 63 74.6
AUR62010552 Chenopodium quinoa HOM05D005378 ORTHO05D006986 3.7e-19 97.8 74 66.2
AUR62017340 Chenopodium quinoa HOM05D005378 ORTHO05D006986 3.7e-19 97.8 74 66.2
CDE01G0558 Ceratophyllum demersum HOM05D005378 ORTHO05D006986 8.2e-19 96.7 63 74.6
Lj2A203G52 Lonicera japonica HOM05D005378 ORTHO05D006986 8.2e-19 96.7 89 57.3
Mapoly0127s0018 Marchantia polymorpha HOM05D005378 ORTHO05D006986 8.2e-19 96.7 63 69.8
AagrBONN_evm.TU.Sc2ySwM_228.1340 Anthoceros agrestis HOM05D005378 ORTHO05D006986 1.1e-18 96.3 63 69.8
Os04g0573200 Oryza sativa ssp. japonica HOM05D005378 ORTHO05D006986 3.1e-18 94.7 63 71.4
Atru.chr6.1840 Acer truncatum HOM05D005378 ORTHO05D037884 9.1e-18 93.2 49 89.8
MELO3C014007.2 Cucumis melo HOM05D005378 ORTHO05D006986 4.5e-17 90.9 75 62.7
Pp3c21_8100 Physcomitrium patens HOM05D005378 ORTHO05D006986 4.5e-17 90.9 63 65.1
SMO201G0146 Selaginella moellendorffii HOM05D005378 ORTHO05D006986 1.3e-16 89.4 63 66.7
HPP92_021079 Vanilla planifolia HOM05D005378 ORTHO05D006986 1.7e-16 89.0 63 68.3
Pp3c18_10490 Physcomitrium patens HOM05D005378 ORTHO05D006986 6.5e-16 87.0 60 66.7
Actinidia02066 Actinidia chinensis HOM05D005378 ORTHO05D006986 5.5e-15 84.0 59 67.8
CBR_g27778 Chara braunii HOM05D005378 ORTHO05D006986 1.2e-14 82.8 63 58.7
COL.COLO4_23814 Corchorus olitorius HOM05D005378 ORTHO05D006986 6.1e-14 80.5 59 62.7
unitig_22.g5478 Utricularia gibba HOM05D002871 ORTHO05D003307 6.8e-13 77.0 63 57.1
BcaC06g31923 Brassica carinata HOM05D005378 ORTHO05D006986 4.8e-11 70.9 53 64.2
BcaC04g22737 Brassica carinata HOM05D005378 ORTHO05D006986 2.9e-08 61.6 35 74.3
C09p15780 Brassica napus HOM05D005378 ORTHO05D006986 2.9e-08 61.6 35 74.3
BolC9t54490H Brassica oleracea HOM05D005378 ORTHO05D006986 2.9e-08 61.6 35 74.3
TAR374G0182 Trochodendron aralioides HOM05D005378 ORTHO05D006986 6.5e-08 60.5 42 61.9
Migut.D00824 Erythranthe guttata HOM05D005378 ORTHO05D006986 1.1e-07 59.7 42 64.3
A09p13280 Brassica napus HOM05D005378 ORTHO05D006986 2.1e-06 55.5 35 71.4
BraA09t36976Z Brassica rapa HOM05D005378 ORTHO05D006986 2.1e-06 55.5 35 71.4


User provided reference genes

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