Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 2210.3 1143 100.0
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1709.5 1147 79.3
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1628.2 1149 74.8
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1601.3 1145 73.9
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1588.2 1155 74.0
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1576.2 1146 73.1
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1575.8 1159 72.5
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1562.0 1143 73.0
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1561.6 1156 73.3
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1558.5 1156 72.0
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1555.0 1151 72.0
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1551.2 1155 72.2
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1550.0 1154 72.6
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1549.6 1150 72.6
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1548.5 1155 71.6
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1538.1 1151 71.4
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1537.7 1141 72.7
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1537.7 1157 71.2
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1533.9 1148 72.4
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1525.8 1148 72.2
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1524.2 1157 70.7
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1518.8 1151 70.3
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1516.5 1154 71.2
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1512.7 1149 70.1
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1507.3 1149 69.4
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1505.0 1161 69.9
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1503.8 1143 71.5
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1500.0 1155 69.3
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1500.0 1147 69.8
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1498.4 1171 70.6
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1498.0 1151 69.9
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1496.9 1151 69.9
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1496.5 1151 69.8
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1483.8 1155 69.6
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1480.7 1147 69.2
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1477.6 1157 70.3
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1476.8 1147 69.4
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1474.1 1146 69.3
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1473.8 1177 68.8
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1471.8 1154 70.0
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1469.1 1145 68.9
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1465.3 1147 68.7
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1461.0 1162 68.8
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1439.9 1154 68.2
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1436.8 1165 66.3
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1436.8 1163 67.8
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1427.5 1145 67.7
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1427.2 1165 66.5
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1421.0 1105 69.4
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1412.9 1167 66.1
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1405.2 1104 67.7
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1404.4 1169 65.7
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1404.0 1109 69.8
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1402.9 1106 67.8
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1394.0 1167 65.6
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1391.3 1148 66.0
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1390.6 1152 65.9
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1388.6 1163 65.7
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1387.9 1161 65.5
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1380.9 1211 64.6
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1377.8 1153 66.2
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1377.5 1163 64.7
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1375.1 1103 66.9
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1374.4 1169 65.5
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1368.2 1165 64.1
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1367.4 1168 65.3
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1365.1 1168 64.7
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1360.5 1180 63.3
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1354.3 1174 64.4
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1349.7 1122 65.9
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1340.9 1128 65.4
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1337.4 1117 65.3
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1334.3 1139 65.5
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1329.7 1117 65.0
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1324.3 1110 64.8
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1321.2 1120 64.8
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1317.8 1122 64.6
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1317.4 1121 64.5
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1313.1 1160 63.3
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1309.3 1158 61.8
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1297.3 1112 64.8
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1286.6 1110 63.4
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1267.7 1108 63.1
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1258.8 1307 55.8
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1238.8 1025 67.7
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1237.6 960 68.5
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1229.5 960 68.2
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1221.8 1115 60.9
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1177.5 1159 58.4
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 0.0e+00 1174.5 1034 63.7
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1165.2 1120 56.9
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1148.3 984 64.9
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1148.3 1122 57.5
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1146.0 1372 52.0
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1141.3 1128 57.6
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1134.4 970 64.0
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1129.4 1086 58.6
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 0.0e+00 1124.4 1149 57.1
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 5.4e-303 1044.6 941 62.1
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 9.1e-303 1043.9 1030 59.4
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.0e-290 1003.8 1080 55.3
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 4.6e-286 988.4 914 62.5
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 2.6e-249 866.3 818 62.2
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 6.7e-237 825.1 819 59.0
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 3.1e-234 816.2 702 62.1
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 8.4e-232 808.1 915 54.8
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 3.5e-230 802.7 997 50.2
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 3.7e-227 792.7 921 53.4
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 4.1e-226 789.3 1162 41.1
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 4.1e-226 789.3 1117 42.3
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.4e-225 786.2 1155 42.6
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.5e-225 785.8 1143 41.5
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 2.5e-220 770.0 1153 40.8
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 4.5e-217 759.2 726 59.9
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 3.2e-207 726.5 662 62.5
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.8e-197 694.1 522 69.0
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 2.9e-192 676.8 1082 38.3
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 3.6e-182 643.3 524 65.8
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.8e-178 630.9 449 75.1
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 2.3e-176 624.0 440 75.7
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.4e-157 561.6 525 58.1
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 1.3e-152 545.0 499 62.3
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 3.8e-131 473.8 411 64.5
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.5e-121 440.7 333 69.4
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 4.3e-111 407.1 637 43.5
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 7.9e-105 386.3 226 82.3
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 5.1e-104 383.6 832 33.1
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 6.5e-99 366.7 354 58.2
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 6.1e-89 333.6 362 56.9
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 3.0e-88 331.3 185 84.3
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 3.3e-87 327.8 351 52.4
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 3.2e-82 311.2 557 38.2
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 1.5e-79 302.4 246 67.9
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 1.4e-69 269.2 189 73.0
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 1.2e-68 266.2 1106 24.2
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 3.3e-66 258.1 140 90.0
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 1.0e-64 253.1 1304 22.6
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 1.8e-64 252.3 140 88.6
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.6e-63 248.4 195 63.1
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 7.5e-63 246.9 246 56.5
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.3e-62 246.1 146 82.9
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 3.9e-59 234.6 258 52.7
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 3.2e-53 214.9 121 88.4
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 2.0e-52 212.2 121 85.1
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 5.0e-51 207.6 121 83.5
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.3e-50 204.5 166 71.1
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.3e-50 204.5 166 71.1
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 6.2e-49 200.7 520 34.6
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 1.8e-48 199.1 132 81.8
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 8.9e-48 196.8 140 75.0
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 4.3e-42 177.9 121 71.9
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 3.4e-39 168.3 132 72.7
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.9e-37 162.5 190 52.1
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 1.9e-37 162.5 133 68.4
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 3.2e-37 161.8 85 90.6
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 5.4e-37 161.0 129 70.5
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.1e-34 153.3 82 89.0
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 1.6e-33 149.4 163 52.1
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 1.8e-32 146.0 82 82.9
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 5.8e-31 141.0 162 54.3
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 2.9e-30 138.7 112 67.9
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 2.7e-28 132.1 150 50.7
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 3.5e-28 131.7 110 60.9
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 2.3e-27 129.0 134 53.7
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.1e-26 126.7 88 81.8
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 6.9e-24 117.5 1096 21.2
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 6.9e-24 117.5 115 58.3
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 5.8e-23 114.4 120 58.3
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 2.7e-20 105.5 95 57.9
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 2.7e-20 105.5 85 60.0
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.5e-20 105.1 109 52.3
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 1.1e-16 93.6 87 55.2
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 7.1e-13 80.9 76 60.5
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 3.7e-09 68.6 59 64.4
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 8.2e-09 67.4 43 69.8
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 4.0e-08 65.1 45 66.7


User provided reference genes

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