Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3400 Acer truncatum HOM05D001312 ORTHO05D001832 5.9e-120 434.1 205 100.0
Ciclev10027677m.g Citrus clementina HOM05D001312 ORTHO05D001832 1.3e-74 283.5 206 68.4
Duzib168G2332 Durio zibethinus HOM05D001312 ORTHO05D001832 1.4e-60 236.9 210 55.2
Dinv29412 Davidia involucrata HOM05D001312 ORTHO05D001832 9.3e-57 224.2 207 53.6
Thecc.09G293200 Theobroma cacao HOM05D001312 ORTHO05D001832 3.0e-55 219.2 211 53.1
Dinv12534 Davidia involucrata HOM05D001312 ORTHO05D001832 3.3e-54 215.7 212 52.4
GSVIVG01031411001 Vitis vinifera HOM05D001312 ORTHO05D001832 5.7e-54 214.9 208 54.8
CiPaw.13G141900 Carya illinoinensis HOM05D001312 ORTHO05D001832 7.4e-54 214.5 208 54.8
COL.COLO4_19275 Corchorus olitorius HOM05D001312 ORTHO05D001832 2.4e-52 209.5 211 52.1
Manes.04G010300 Manihot esculenta HOM05D001312 ORTHO05D001832 4.1e-52 208.8 208 53.8
Cpa.g.sc47.58 Carica papaya HOM05D001312 ORTHO05D001832 1.2e-51 207.2 215 52.1
QL01p014004 Quercus lobata HOM05D001312 ORTHO05D001832 6.5e-50 201.4 208 49.0
MD03G1132800 Malus domestica HOM05D001312 ORTHO05D001832 9.4e-49 197.6 204 50.5
Actinidia00821 Actinidia chinensis HOM05D001312 ORTHO05D001832 4.6e-48 195.3 216 48.1
CSS0005615 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D001832 7.9e-48 194.5 212 50.0
Potri.009G150200 Populus trichocarpa HOM05D001312 ORTHO05D001832 5.1e-47 191.8 207 48.8
Sabra04G0128400 Salix brachista HOM05D001312 ORTHO05D001832 1.1e-46 190.7 209 48.3
RcHm_v2.0_Chr5g0055621 Rosa chinensis HOM05D001312 ORTHO05D001832 2.0e-46 189.9 207 48.8
vmacro14380 Vaccinium macrocarpon HOM05D001312 ORTHO05D001832 2.6e-46 189.5 208 47.6
Potri.004G189600 Populus trichocarpa HOM05D001312 ORTHO05D001832 1.3e-45 187.2 209 49.3
Gorai.006G108600 Gossypium raimondii HOM05D001312 ORTHO05D001832 2.8e-45 186.0 208 43.8
Prupe.6G117600 Prunus persica HOM05D001312 ORTHO05D001832 8.2e-45 184.5 209 49.8
Gohir.A09G092100 Gossypium hirsutum HOM05D001312 ORTHO05D001832 1.1e-44 184.1 208 43.3
TWI79G1536 Tripterygium wilfordii HOM05D001312 ORTHO05D001832 1.1e-44 184.1 196 49.0
Gohir.D09G091966 Gossypium hirsutum HOM05D001312 ORTHO05D001832 1.4e-44 183.7 206 43.7
Cc01_g09930 Coffea canephora HOM05D001312 ORTHO05D001832 3.1e-44 182.6 205 46.3
MD11G1155100 Malus domestica HOM05D001312 ORTHO05D001832 9.1e-44 181.0 204 48.0
Cfa010099 Carpinus fangiana HOM05D001312 ORTHO05D001832 1.2e-43 180.6 211 46.9
Haze_23465 Corylus avellana HOM05D001312 ORTHO05D001832 7.7e-43 177.9 211 46.9
TAR623G0291 Trochodendron aralioides HOM05D001312 ORTHO05D001832 1.0e-42 177.6 210 48.6
FAN11G4030 Fragaria x ananassa HOM05D001312 ORTHO05D001832 8.5e-42 174.5 210 45.7
FvH4_3g30100 Fragaria vesca HOM05D001312 ORTHO05D001832 1.1e-41 174.1 210 45.7
Manes.11G155800 Manihot esculenta HOM05D001312 ORTHO05D001832 1.1e-41 174.1 198 47.5
ClCG02G021830 Citrullus lanatus HOM05D001312 ORTHO05D001832 1.9e-41 173.3 204 46.6
FAN16G2071 Fragaria x ananassa HOM05D001312 ORTHO05D001832 1.6e-40 170.2 210 44.8
FAN21G2146 Fragaria x ananassa HOM05D001312 ORTHO05D001832 3.6e-40 169.1 210 44.8
CsaV3_6G014620 Cucumis sativus L. HOM05D001312 ORTHO05D001832 4.7e-40 168.7 209 45.0
FAN25G0002 Fragaria x ananassa HOM05D001312 ORTHO05D001832 6.1e-40 168.3 210 44.8
EL10Ac9g21057 Beta vulgaris HOM05D001312 ORTHO05D001832 7.9e-40 167.9 208 43.3
Lj1C219T5 Lonicera japonica HOM05D001312 ORTHO05D001832 1.0e-39 167.5 207 44.4
Nitab4.5_0000442g0240 Nicotiana tabacum HOM05D001312 ORTHO05D001832 2.3e-39 166.4 248 41.9
Rhsim13G0104700 Rhododendron simsii HOM05D001312 ORTHO05D001832 3.0e-39 166.0 214 45.3
HanXRQChr01g0016711 Helianthus annuus HOM05D001312 ORTHO05D001832 5.2e-39 165.2 209 45.5
TWI75G0682 Tripterygium wilfordii HOM05D001312 ORTHO05D001832 5.2e-39 165.2 194 46.9
Eucgr.J00416 Eucalyptus grandis HOM05D001312 ORTHO05D001832 8.8e-39 164.5 210 43.8
Sabra09G0118900 Salix brachista HOM05D001312 ORTHO05D001832 1.1e-38 164.1 199 45.7
AUR62023958 Chenopodium quinoa HOM05D001312 ORTHO05D001832 9.7e-38 161.0 206 41.7
Nitab4.5_0002571g0030 Nicotiana tabacum HOM05D001312 ORTHO05D001832 9.7e-38 161.0 246 40.7
THA.LOC104799531 Tarenaya hassleriana HOM05D001312 ORTHO05D001832 2.2e-37 159.8 210 43.3
Actinidia24175 Actinidia chinensis HOM05D001312 ORTHO05D001832 3.7e-37 159.1 154 55.2
Actinidia07206 Actinidia chinensis HOM05D001312 ORTHO05D001832 8.2e-37 157.9 154 54.5
DCAR_022735 Daucus carota HOM05D001312 ORTHO05D001832 7.0e-36 154.8 194 43.3
Sopen11g026500 Solanum pennellii HOM05D001312 ORTHO05D001832 7.0e-36 154.8 248 40.7
Solyc11g066780.3 Solanum lycopersicum HOM05D001312 ORTHO05D001832 2.0e-35 153.3 247 40.1
CAN.G644.40 Capsicum annuum HOM05D001312 ORTHO05D001832 2.6e-35 152.9 245 39.6
Sed0012905 Sechium edule HOM05D001312 ORTHO05D001832 2.6e-35 152.9 207 41.5
Rhsim01G0209200 Rhododendron simsii HOM05D001312 ORTHO05D001832 3.5e-35 152.5 200 44.0
AL6G33760 Arabidopsis lyrata HOM05D001312 ORTHO05D001832 4.5e-35 152.1 214 43.0
CARHR190830 Cardamine hirsuta HOM05D001312 ORTHO05D001832 4.5e-35 152.1 210 41.9
AUR62031754 Chenopodium quinoa HOM05D001312 ORTHO05D001832 1.0e-34 151.0 206 40.8
HanXRQChr11g0346711 Helianthus annuus HOM05D001312 ORTHO05D001832 1.0e-34 151.0 204 41.2
Sp6g22660 Schrenkiella parvula HOM05D001312 ORTHO05D001832 2.2e-34 149.8 218 41.3
Hund07715 Selenicereus undatus HOM05D001312 ORTHO05D001832 2.9e-34 149.4 207 40.1
VMungo1127G0568 Vigna mungo HOM05D001312 ORTHO05D001832 2.9e-34 149.4 206 44.7
arahy.Tifrunner.gnm1.ann1.A1GHB6 Arachis hypogaea HOM05D001312 ORTHO05D001832 3.8e-34 149.1 205 44.4
arahy.Tifrunner.gnm1.ann1.UY40LW Arachis hypogaea HOM05D001312 ORTHO05D001832 6.5e-34 148.3 205 44.4
Nn6g35082 Nelumbo nucifera HOM05D001312 ORTHO05D001832 8.5e-34 147.9 218 45.0
Peaxi162Scf00789g00216 Petunia axillaris HOM05D001312 ORTHO05D001832 8.5e-34 147.9 247 38.1
BolC2t07191H Brassica oleracea HOM05D001312 ORTHO05D001832 1.9e-33 146.7 204 40.7
Carub.0006s2047 Capsella rubella HOM05D001312 ORTHO05D001832 1.9e-33 146.7 213 41.3
Lsat_1_v5_gn_1_61921 Lactuca sativa HOM05D001312 ORTHO05D001832 1.9e-33 146.7 200 43.5
MSTRG.21070 Avicennia marina HOM05D001312 ORTHO05D001832 3.2e-33 146.0 244 36.5
BcaC03g13911 Brassica carinata HOM05D001312 ORTHO05D001832 4.2e-33 145.6 203 40.9
C02p11220 Brassica napus HOM05D001312 ORTHO05D001832 4.2e-33 145.6 203 40.9
Lj3g0003552 Lotus japonicus HOM05D001312 ORTHO05D001832 4.2e-33 145.6 210 44.3
Thhalv10012428m.g Eutrema salsugineum HOM05D001312 ORTHO05D001832 5.5e-33 145.2 213 40.8
PGR119G0461 Punica granatum HOM05D001312 ORTHO05D001832 7.2e-33 144.8 207 41.5
Glyma.11G190000 Glycine max HOM05D001312 ORTHO05D001832 2.7e-32 142.9 204 41.2
Aa31LG4G14290 Aethionema arabicum HOM05D001312 ORTHO05D001832 4.7e-32 142.1 207 38.6
BcaB05g22698 Brassica carinata HOM05D001312 ORTHO05D001832 4.7e-32 142.1 213 38.5
Nn2g13967 Nelumbo nucifera HOM05D001312 ORTHO05D001832 4.7e-32 142.1 205 45.4
BNapus_Darmor_BZH_scaffold_38p00420 Brassica napus HOM05D001312 ORTHO05D001832 6.1e-32 141.7 206 39.8
BolC3t13720H Brassica oleracea HOM05D001312 ORTHO05D001832 6.1e-32 141.7 207 41.1
BcaC01g06570 Brassica carinata HOM05D001312 ORTHO05D001832 1.0e-31 141.0 207 41.1
C03p12520 Brassica napus HOM05D001312 ORTHO05D001832 1.0e-31 141.0 207 41.1
BraA02t05684Z Brassica rapa HOM05D001312 ORTHO05D001832 2.3e-31 139.8 206 38.3
A03p10880 Brassica napus HOM05D001312 ORTHO05D001832 1.2e-30 137.5 207 39.6
Lalb_Chr01g0004711 Lupinus albus HOM05D001312 ORTHO05D001832 3.3e-30 136.0 211 40.3
BcaB01g04696 Brassica carinata HOM05D001312 ORTHO05D001832 4.4e-30 135.6 211 39.8
PSO339G1313 Papaver somniferum HOM05D001312 ORTHO05D001832 4.4e-30 135.6 202 42.6
BraA03t10398Z Brassica rapa HOM05D001312 ORTHO05D001832 5.7e-30 135.2 209 39.7
ECA248G2284 Erigeron canadensis HOM05D001312 ORTHO05D001832 9.7e-30 134.4 200 41.5
Migut.D02327 Erythranthe guttata HOM05D001312 ORTHO05D001832 1.7e-29 133.7 245 37.6
PSO063G1518 Papaver somniferum HOM05D001312 ORTHO05D001832 1.8e-28 130.2 199 39.7
Glyma.12G084300 Glycine max HOM05D001312 ORTHO05D001832 2.4e-28 129.8 237 35.4
Lalb_Chr03g0027881 Lupinus albus HOM05D001312 ORTHO05D001832 1.6e-27 127.1 235 37.4
A01p26830 Brassica napus HOM05D001312 ORTHO05D001832 2.7e-27 126.3 211 40.8
BraA01t02612Z Brassica rapa HOM05D001312 ORTHO05D001832 2.7e-27 126.3 211 40.8
BcaC09g49653 Brassica carinata HOM05D001312 ORTHO05D001832 7.7e-27 124.8 211 40.8
C01p34190 Brassica napus HOM05D001312 ORTHO05D001832 7.7e-27 124.8 211 40.8
BolC1t03389H Brassica oleracea HOM05D001312 ORTHO05D001832 7.7e-27 124.8 211 40.8
DCAR_006144 Daucus carota HOM05D001312 ORTHO05D001832 7.7e-27 124.8 208 37.0
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 7.7e-27 124.8 190 42.6
AL5G23240 Arabidopsis lyrata HOM05D001312 ORTHO05D001832 1.0e-26 124.4 213 39.0
Sc12g0003890 Simmondsia chinensis HOM05D001312 ORTHO05D001832 1.7e-26 123.6 192 41.1
Carub.0005s1053 Capsella rubella HOM05D001312 ORTHO05D001832 1.9e-25 120.2 210 39.0
Aqoxy1G00966 Aquilegia oxysepala HOM05D001312 ORTHO05D001832 2.5e-25 119.8 221 36.2
unitig_46.g18236 Utricularia gibba HOM05D001312 ORTHO05D001832 2.5e-25 119.8 237 37.1
AT5G35210 Arabidopsis thaliana HOM05D001312 ORTHO05D001832 3.2e-25 119.4 211 39.8
Glyma.13G320100 Glycine max HOM05D001312 ORTHO05D001832 7.2e-25 118.2 204 38.7
SGA_v2.0_scaffold27G11600 Striga asiatica HOM05D001312 ORTHO05D001832 9.4e-25 117.9 147 39.5
Medtr2g084615 Medicago truncatula HOM05D001312 ORTHO05D001832 1.2e-24 117.5 206 36.4
Ca_19363_v3 Cicer arietinum L. HOM05D001312 ORTHO05D001832 1.6e-24 117.1 220 36.8
Ca_30478_v3 Cicer arietinum L. HOM05D001312 ORTHO05D001832 1.6e-24 117.1 220 36.8
MSTRG.21072 Avicennia marina HOM05D001312 ORTHO05D001832 2.1e-24 116.7 129 46.5
Medtr2g084620 Medicago truncatula HOM05D001312 ORTHO05D001832 2.1e-24 116.7 203 35.5
MELO3C021462.2 Cucumis melo HOM05D001312 ORTHO05D001832 3.6e-24 115.9 177 42.4
Glyma.12G180700 Glycine max HOM05D001312 ORTHO05D001832 4.7e-24 115.5 206 36.9
Migut.N02523 Erythranthe guttata HOM05D001312 ORTHO05D001832 2.6e-22 109.8 204 33.8
Ah.01g016710 Amaranthus hybridus HOM05D001312 ORTHO05D001832 3.4e-22 109.4 205 34.6
VMungo1080G0366 Vigna mungo HOM05D001312 ORTHO05D001832 1.7e-21 107.1 202 38.1
CAN.G919.4 Capsicum annuum HOM05D001312 ORTHO05D001832 8.3e-21 104.8 188 35.6
PGSC0003DMG400007126 Solanum tuberosum HOM05D001312 ORTHO05D001832 8.3e-21 104.8 125 46.4
CANSAT64G1407 Cannabis sativa HOM05D001312 ORTHO05D001832 1.8e-20 103.6 195 32.8
Phvul.005G128100 Phaseolus vulgaris HOM05D001312 ORTHO05D001832 7.0e-20 101.7 205 37.1
Sc21g0004650 Simmondsia chinensis HOM05D001312 ORTHO05D001832 9.1e-20 101.3 226 33.6
Sopen06g031060 Solanum pennellii HOM05D001312 ORTHO05D001832 1.2e-19 100.9 126 46.0
Solyc06g074640.2 Solanum lycopersicum HOM05D001312 ORTHO05D001832 2.7e-19 99.8 126 45.2
Phvul.011G089300 Phaseolus vulgaris HOM05D001312 ORTHO05D001832 5.9e-19 98.6 204 36.8
CSS0034096 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D001832 1.3e-18 97.4 160 42.5
Ca_01686_v3 Cicer arietinum L. HOM05D001312 ORTHO05D001832 1.3e-18 97.4 197 36.5
TPR.G32362 Trifolium pratense HOM05D001312 ORTHO05D001832 1.7e-18 97.1 213 34.3
Os11g0148700 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D001832 2.1e-16 90.1 226 31.9
Psat5g255240 Pisum sativum HOM05D001312 ORTHO05D001832 4.7e-16 89.0 193 32.6
Zm00001eb406520 Zea mays HOM05D001312 ORTHO05D001832 2.3e-15 86.7 126 41.3
Psat7g143680 Pisum sativum HOM05D001312 ORTHO05D001832 4.0e-15 85.9 210 30.5
TPR.G20749 Trifolium pratense HOM05D001312 ORTHO05D001832 7.5e-14 81.6 270 26.7
CDE06G0794 Ceratophyllum demersum HOM05D001312 ORTHO05D001832 2.8e-13 79.7 157 35.0
HPP92_017974 Vanilla planifolia HOM05D001312 ORTHO05D001832 1.4e-12 77.4 213 29.1
HPP92_026720 Vanilla planifolia HOM05D001312 ORTHO05D001832 3.5e-11 72.8 124 34.7
Nitab4.5_0004926g0010 Nicotiana tabacum HOM05D001312 ORTHO05D001832 2.3e-10 70.1 58 48.3
Peaxi162Scf00157g00417 Petunia axillaris HOM05D001312 ORTHO05D001832 3.8e-10 69.3 63 49.2
CDE02G3010 Ceratophyllum demersum HOM05D001312 ORTHO05D001832 1.5e-09 67.4 119 32.8
DCAR_018746 Daucus carota HOM05D001312 ORTHO05D001832 2.5e-09 66.6 197 27.4


User provided reference genes

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