Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 1.8e-134 482.6 248 100.0
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 1.1e-78 297.4 194 79.9
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 1.7e-57 226.9 192 64.1
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 2.2e-52 209.9 208 53.4
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 3.2e-51 206.1 192 59.4
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 4.2e-51 205.7 197 56.3
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 7.1e-51 204.9 192 58.3
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 3.9e-49 199.1 203 53.7
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 6.6e-49 198.4 219 50.7
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.3e-48 195.7 203 52.7
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.3e-48 195.7 186 56.5
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 4.3e-48 195.7 190 56.3
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 1.1e-46 191.0 185 54.6
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 2.6e-45 186.4 187 55.1
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 2.6e-45 186.4 152 63.2
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 7.6e-45 184.9 192 51.6
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 9.9e-45 184.5 152 62.5
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 9.9e-45 184.5 152 62.5
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 2.2e-44 183.3 184 54.3
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 6.4e-44 181.8 158 60.8
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 8.4e-44 181.4 221 47.5
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 1.1e-43 181.0 152 59.9
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 3.2e-43 179.5 202 51.5
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 3.2e-43 179.5 171 56.1
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 4.2e-43 179.1 149 62.4
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 9.3e-43 177.9 168 55.4
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 9.3e-43 177.9 186 51.6
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 7.9e-42 174.9 187 54.0
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 1.0e-41 174.5 187 49.2
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 1.0e-41 174.5 182 56.0
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 1.0e-41 174.5 178 53.9
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 1.8e-41 173.7 171 57.9
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 3.9e-41 172.6 176 55.1
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 1.5e-40 170.6 149 59.7
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 1.9e-40 170.2 210 46.2
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 1.9e-40 170.2 153 56.9
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 3.3e-40 169.5 176 52.8
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 5.6e-40 168.7 167 53.9
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 7.4e-40 168.3 202 47.0
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 2.1e-39 166.8 189 50.3
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 3.7e-39 166.0 195 48.7
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 4.8e-39 165.6 189 49.7
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 1.4e-38 164.1 189 49.2
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 2.4e-38 163.3 185 51.4
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 2.4e-38 163.3 155 56.8
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 4.0e-38 162.5 155 56.1
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 4.0e-38 162.5 155 56.1
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 6.9e-38 161.8 177 52.5
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 9.0e-38 161.4 220 43.2
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 3.4e-37 159.5 184 46.7
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 3.4e-37 159.5 152 54.6
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 5.8e-37 158.7 157 54.8
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 2.2e-36 156.8 175 46.9
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 3.8e-36 156.0 164 54.3
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 3.8e-36 156.0 178 49.4
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 6.4e-36 155.2 207 44.4
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 6.4e-36 155.2 153 54.2
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 1.9e-35 153.7 209 44.5
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 4.2e-35 152.5 159 53.5
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 1.6e-34 150.6 167 48.5
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 2.1e-34 150.2 175 46.9
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 3.5e-34 149.4 183 46.4
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.3e-33 147.5 123 61.8
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 1.8e-33 147.1 184 46.7
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 1.8e-33 147.1 183 49.2
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 6.7e-33 145.2 174 49.4
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.1e-32 144.4 177 48.0
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.1e-32 144.4 157 51.0
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.5e-32 144.1 170 50.6
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 2.5e-32 143.3 195 44.6
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 5.6e-32 142.1 156 51.3
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 7.4e-32 141.7 203 39.9
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 2.1e-31 140.2 182 46.7
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 2.4e-30 136.7 175 43.4
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 5.3e-30 135.6 158 49.4
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 1.5e-29 134.0 166 45.2
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.5e-29 134.0 166 45.2
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.5e-29 134.0 166 45.2
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 7.6e-29 131.7 166 44.6
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 2.2e-28 130.2 177 45.8
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 2.9e-28 129.8 166 47.0
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.5e-27 126.7 166 44.0
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 2.5e-27 126.7 195 41.5
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 5.5e-27 125.6 126 54.8
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 5.5e-27 125.6 196 40.8
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 7.1e-27 125.2 183 43.7
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 7.1e-27 125.2 180 44.4
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 1.6e-26 124.0 203 38.9
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 2.7e-26 123.2 153 49.0
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 3.5e-26 122.9 183 43.2
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 3.5e-26 122.9 183 43.2
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 3.5e-26 122.9 183 43.2
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 1.0e-25 121.3 183 42.6
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 1.0e-25 121.3 183 42.6
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 8.7e-25 118.2 178 43.3
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 8.7e-25 118.2 228 33.8
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 4.3e-24 115.9 118 55.1
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 5.7e-24 115.5 156 45.5
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 5.7e-24 115.5 154 46.1
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 7.4e-24 115.2 94 63.8
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 1.6e-23 114.0 154 45.5
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 4.5e-21 105.9 177 36.2
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 4.2e-19 99.4 167 39.5
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 7.9e-18 95.1 183 36.1
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 1.1e-16 91.3 150 35.3
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 2.0e-16 90.5 147 39.5
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 5.7e-16 89.0 180 36.7
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 2.8e-15 86.7 114 43.9
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 1.4e-14 84.3 123 42.3
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 1.2e-13 81.3 71 54.9
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 2.2e-12 77.0 182 30.2
CAN.G588.92 Capsicum annuum HOM05D005442 ORTHO05D006450 1.9e-11 73.9 99 43.4
Actinidia39161 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.4e-09 67.8 104 40.4
MD10G1126600 Malus domestica HOM05D005442 ORTHO05D006450 5.1e-09 65.9 85 49.4
Actinidia21470 Actinidia chinensis HOM05D005442 ORTHO05D006450 6.7e-09 65.5 131 35.1
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 6.7e-09 65.5 115 37.4
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 2.0e-08 63.9 158 31.0
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 9.7e-08 61.6 206 26.2
Potri.009G137000 Populus trichocarpa HOM05D005442 ORTHO05D006450 3.7e-07 59.7 55 47.3
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 4.8e-07 59.3 74 44.6
Nitab4.5_0003698g0060 Nicotiana tabacum HOM05D005442 ORTHO05D006450 6.3e-07 58.9 42 61.9
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 8.2e-07 58.5 59 52.5
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 1.1e-06 58.2 133 30.8
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 1.8e-06 57.4 37 67.6
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 2.4e-06 57.0 74 44.6
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 4.1e-06 56.2 74 41.9
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 4.1e-06 56.2 51 51.0
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 5.3e-06 55.8 83 44.6
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 5.3e-06 55.8 84 41.7


User provided reference genes

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