Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 3.6e-72 275.0 159 100.0
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 1.0e-42 177.2 234 51.7
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 4.6e-27 125.2 237 39.2
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 9.9e-22 107.5 236 37.3
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 8.4e-21 104.4 249 34.9
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.9e-20 103.2 239 35.1
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 1.2e-19 100.5 249 34.1
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 1.2e-19 100.5 237 34.6
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 2.1e-19 99.8 240 36.7
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 3.5e-19 99.0 237 35.9
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 3.5e-19 99.0 239 33.5
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 7.8e-19 97.8 236 35.2
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.0e-18 97.4 237 35.4
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 3.0e-18 95.9 237 34.2
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 6.6e-18 94.7 237 34.6
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.1e-17 94.0 236 33.9
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.5e-17 93.6 248 31.0
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.9e-17 93.2 240 33.8
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.5e-17 92.8 237 32.5
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.5e-17 92.8 237 32.5
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.5e-17 92.8 237 33.8
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 3.3e-17 92.4 237 33.8
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 1.3e-16 90.5 236 33.1
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 2.1e-16 89.7 236 34.3
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 3.6e-16 89.0 238 34.0
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.6e-16 89.0 237 34.6
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 8.1e-16 87.8 236 34.7
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.8e-15 86.7 249 31.3
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 3.1e-15 85.9 239 31.0
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 3.1e-15 85.9 239 30.5
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 4.0e-15 85.5 236 30.5
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 6.9e-15 84.7 236 32.2
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 9.0e-15 84.3 239 30.1
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 2.0e-14 83.2 236 30.1
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 4.4e-14 82.0 237 32.1
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 9.9e-14 80.9 242 33.9
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.3e-13 80.5 246 31.3
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 3.8e-13 79.0 236 29.7
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 4.9e-13 78.6 219 32.9
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 1.1e-12 77.4 234 30.3
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.4e-12 77.0 237 32.5
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-11 73.9 236 30.9
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 2.1e-11 73.2 236 32.6
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 7.9e-11 71.2 201 32.8
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.0e-10 70.9 219 32.0
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 3.3e-09 65.9 232 29.7
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 4.3e-09 65.5 236 28.4
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 5.6e-09 65.1 232 29.3
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 5.6e-09 65.1 232 28.9
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 7.3e-09 64.7 206 30.1
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.3e-08 63.9 220 28.2
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.1e-08 63.2 208 30.8
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 2.8e-08 62.8 231 28.1
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 3.6e-08 62.4 35 82.9
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 4.8e-08 62.0 239 30.1
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 6.2e-08 61.6 219 27.4
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 8.1e-08 61.2 33 84.8
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.1e-07 60.8 35 82.9
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.1e-07 60.8 33 84.8
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 1.4e-07 60.5 36 77.8
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 1.4e-07 60.5 206 29.6
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.8e-07 60.1 35 82.9
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 1.8e-07 60.1 35 77.1
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 2.4e-07 59.7 204 28.9
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 2.4e-07 59.7 34 79.4
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 2.4e-07 59.7 36 75.0
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.4e-07 59.7 239 30.5
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.1e-07 59.3 58 56.9
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 3.1e-07 59.3 36 80.6
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 3.1e-07 59.3 36 80.6
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 3.1e-07 59.3 36 75.0
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 3.1e-07 59.3 240 28.8
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 4.0e-07 58.9 35 82.9
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 4.0e-07 58.9 35 77.1
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 4.0e-07 58.9 35 80.0
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 4.0e-07 58.9 33 81.8
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 4.0e-07 58.9 204 28.4
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 5.3e-07 58.5 35 74.3
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 6.9e-07 58.2 36 77.8
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 6.9e-07 58.2 35 80.0
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 9.0e-07 57.8 36 72.2
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 9.0e-07 57.8 34 79.4
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.2e-06 57.4 34 79.4
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 1.2e-06 57.4 36 75.0
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 1.5e-06 57.0 35 74.3
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 1.5e-06 57.0 35 74.3
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.6e-06 56.2 239 27.2
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 2.6e-06 56.2 35 77.1
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 3.4e-06 55.8 36 75.0
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 3.4e-06 55.8 36 75.0
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 4.5e-06 55.5 35 74.3
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 5.8e-06 55.1 36 69.4
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 5.8e-06 55.1 35 71.4
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 5.8e-06 55.1 35 71.4
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 5.8e-06 55.1 36 69.4
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 5.8e-06 55.1 34 73.5
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 5.8e-06 55.1 35 74.3
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 5.8e-06 55.1 33 78.8
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 7.6e-06 54.7 34 73.5
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 7.6e-06 54.7 34 73.5
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 7.6e-06 54.7 36 72.2
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 7.6e-06 54.7 36 72.2
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 7.6e-06 54.7 35 71.4
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 7.6e-06 54.7 35 71.4
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 7.6e-06 54.7 32 75.0
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 9.9e-06 54.3 35 71.4
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 9.9e-06 54.3 35 68.6
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 9.9e-06 54.3 35 71.4
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 9.9e-06 54.3 35 71.4


User provided reference genes

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