Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 2.2e-180 635.6 333 100.0
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 6.0e-154 547.7 318 86.8
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 1.3e-153 546.6 333 86.2
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 9.0e-150 533.9 335 83.3
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 2.0e-149 532.7 330 82.7
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 2.2e-148 529.3 330 82.7
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 8.4e-148 527.3 333 83.8
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 2.4e-147 525.8 335 82.7
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 4.2e-147 525.0 334 81.1
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 7.1e-147 524.2 330 81.8
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 1.6e-146 523.1 335 82.1
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 2.1e-146 522.7 330 82.4
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 2.7e-146 522.3 330 82.1
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 4.6e-146 521.5 329 80.9
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 3.9e-145 518.5 335 79.7
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 4.3e-144 515.0 333 79.9
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 5.6e-144 514.6 339 79.1
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 2.1e-143 512.7 326 80.7
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 3.6e-143 511.9 331 81.3
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 3.6e-143 511.9 332 81.0
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 4.8e-143 511.5 331 81.6
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 6.2e-143 511.1 334 79.9
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 8.1e-143 510.8 326 80.4
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 3.1e-142 508.8 331 78.2
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 3.1e-142 508.8 328 80.8
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 3.1e-142 508.8 326 80.7
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 5.3e-142 508.1 338 78.7
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 1.5e-141 506.5 336 79.5
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 4.5e-141 505.0 333 77.2
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 4.5e-141 505.0 331 78.9
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 1.7e-140 503.1 336 77.4
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 3.8e-140 501.9 332 79.5
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 1.1e-139 500.4 339 77.0
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 1.9e-139 499.6 329 79.0
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 7.9e-138 494.2 332 77.4
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 6.7e-137 491.1 331 76.7
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 7.4e-136 487.6 329 76.9
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 9.6e-136 487.3 342 77.5
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 4.8e-135 485.0 334 74.9
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 8.1e-135 484.2 329 76.3
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 1.4e-134 483.4 341 75.1
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.4e-134 482.6 329 76.0
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 6.9e-134 481.1 328 75.9
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 6.9e-134 481.1 329 75.1
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 1.2e-133 480.3 329 75.7
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 2.0e-133 479.6 329 75.4
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 2.0e-133 479.6 333 75.1
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 3.4e-133 478.8 336 71.7
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 5.8e-133 478.0 337 74.5
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 5.8e-133 478.0 328 75.3
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 1.3e-132 476.9 331 74.6
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 1.7e-132 476.5 330 75.5
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 2.2e-132 476.1 341 73.9
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 6.4e-132 474.6 329 75.1
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 6.4e-132 474.6 333 74.8
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 1.1e-131 473.8 328 74.7
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 2.5e-131 472.6 327 74.3
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 3.2e-131 472.2 311 78.1
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 7.1e-131 471.1 343 72.0
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 1.6e-130 469.9 274 87.6
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 2.1e-130 469.5 325 76.0
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 2.1e-130 469.5 334 73.1
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 2.7e-130 469.2 330 74.2
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 2.7e-130 469.2 330 74.2
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 1.3e-129 466.8 306 77.5
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.8e-129 466.5 321 76.3
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 1.8e-129 466.5 320 79.1
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 2.3e-129 466.1 337 73.3
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 5.1e-129 464.9 330 73.6
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 6.7e-129 464.5 343 72.3
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 3.3e-128 462.2 328 73.5
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 4.3e-128 461.8 338 74.9
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 9.6e-128 460.7 306 76.8
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 2.1e-127 459.5 335 72.5
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 1.8e-126 456.4 363 68.6
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 1.8e-126 456.4 352 72.4
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 1.8e-126 456.4 329 72.6
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 3.1e-126 455.7 363 70.5
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 4.0e-126 455.3 302 78.1
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 4.5e-125 451.8 333 73.9
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 1.3e-124 450.3 333 73.6
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 8.4e-124 447.6 369 67.2
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 1.9e-123 446.4 371 67.4
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 1.6e-122 443.4 307 74.9
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 2.1e-122 443.0 342 71.1
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 3.5e-122 442.2 402 64.7
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 4.6e-122 441.8 364 65.9
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 1.3e-121 440.3 310 71.9
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 1.8e-121 439.9 306 74.2
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 3.1e-118 429.1 276 79.3
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 1.2e-117 427.2 340 65.6
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 3.8e-116 422.2 309 74.8
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 1.2e-114 417.2 281 76.9
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.4e-113 413.7 321 67.9
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 3.0e-113 412.5 317 67.5
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 2.5e-112 409.5 266 79.3
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 2.2e-111 406.4 293 72.7
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 8.2e-111 404.4 245 84.5
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 4.1e-110 402.1 331 68.6
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 8.5e-108 394.4 341 61.3
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 1.8e-105 386.7 305 68.2
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 3.0e-105 386.0 300 67.0
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 5.7e-104 381.7 312 64.4
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 1.8e-102 376.7 274 71.9
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 1.3e-100 370.5 248 73.8
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 1.2e-98 364.0 302 61.6
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 6.7e-97 358.2 212 86.3
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 2.8e-95 352.8 236 80.9
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 5.3e-94 348.6 210 83.8
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 1.6e-90 337.0 202 84.2
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 8.8e-89 331.3 301 57.5
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 1.6e-85 320.5 230 74.3
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 1.7e-84 317.0 274 59.9
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 2.7e-77 293.1 206 73.8
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 1.5e-75 287.3 169 86.4
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 2.5e-75 286.6 196 76.0
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 5.9e-69 265.4 197 72.1
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 8.3e-63 245.0 306 43.5
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 6.8e-49 198.7 147 72.1
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 1.7e-47 194.1 147 73.5
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 3.3e-43 179.9 277 41.2
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 8.7e-36 155.2 104 74.0
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 6.6e-28 129.0 120 60.0
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 4.3e-27 126.3 95 71.6
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 4.8e-26 122.9 224 37.9
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 4.0e-25 119.8 246 39.0
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 6.9e-25 119.0 90 66.7
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 4.9e-23 112.8 79 70.9
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.3e-20 104.8 118 55.9
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 8.7e-20 102.1 61 82.0
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 8.7e-20 102.1 62 82.3
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.5e-19 101.3 62 83.9
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.5e-19 101.3 62 85.5
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 1.9e-19 100.9 81 56.8
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 3.3e-19 100.1 84 54.8
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 1.6e-18 97.8 91 56.0
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 4.8e-18 96.3 106 50.9
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.6e-16 90.5 56 83.9
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.4e-16 90.1 55 85.5
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.3e-10 71.6 37 86.5
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 8.2e-10 68.9 45 71.1
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 2.4e-09 67.4 89 46.1
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 5.3e-09 66.2 43 72.1
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 1.2e-08 65.1 39 84.6
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 2.0e-08 64.3 35 85.7
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 1.0e-07 62.0 123 35.8


User provided reference genes

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