Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 0.0e+00 1309.3 650 100.0
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 0.0e+00 1306.6 650 99.7
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 0.0e+00 1086.6 653 84.1
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 0.0e+00 1085.9 654 83.0
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 0.0e+00 1084.3 656 82.9
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 4.4e-310 1067.4 647 83.0
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 4.4e-310 1067.4 657 80.4
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 5.7e-310 1067.0 662 81.4
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 3.7e-309 1064.3 653 81.8
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 4.9e-309 1063.9 651 81.4
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.1e-308 1062.8 646 81.4
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 3.1e-308 1061.2 662 81.4
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 1.2e-307 1059.3 655 80.6
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 2.0e-307 1058.5 657 81.1
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 4.5e-307 1057.4 657 80.1
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 1.0e-306 1056.2 655 80.5
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 1.3e-306 1055.8 577 88.0
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 8.6e-306 1053.1 674 78.5
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 1.1e-305 1052.7 653 79.9
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 4.3e-305 1050.8 650 81.1
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 7.3e-305 1050.0 685 78.1
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 6.1e-304 1047.0 654 79.8
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 2.3e-303 1045.0 654 79.7
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.3e-303 1045.0 651 80.3
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 6.8e-303 1043.5 712 75.7
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.2e-302 1042.7 659 80.0
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.2e-302 1042.7 658 80.4
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 2.6e-302 1041.6 661 78.8
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 5.7e-302 1040.4 652 79.3
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 7.5e-302 1040.0 660 79.8
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 9.8e-302 1039.6 650 80.3
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 2.2e-301 1038.5 652 79.3
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 2.9e-301 1038.1 584 86.1
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 2.9e-301 1038.1 578 86.3
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 9.2e-300 1033.1 653 79.3
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 1.0e-298 1029.6 580 85.5
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 3.9e-298 1027.7 636 81.1
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 8.6e-298 1026.5 588 84.4
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 2.5e-297 1025.0 635 80.0
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 2.3e-295 1018.5 630 79.8
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 3.4e-294 1014.6 672 75.6
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 3.4e-294 1014.6 580 83.8
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 4.4e-294 1014.2 581 85.4
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 7.5e-294 1013.4 581 84.9
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 9.8e-294 1013.1 578 84.6
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 9.8e-294 1013.1 575 84.5
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.7e-293 1012.3 584 83.9
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 2.9e-293 1011.5 581 83.3
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.9e-293 1010.7 645 78.8
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.1e-292 1009.6 638 79.6
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.9e-292 1008.8 581 83.6
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 4.1e-292 1007.7 649 78.0
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 9.2e-292 1006.5 581 84.5
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 1.2e-291 1006.1 580 83.6
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 2.0e-291 1005.4 607 80.6
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 2.7e-291 1005.0 575 83.5
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 3.5e-291 1004.6 648 77.5
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 4.6e-291 1004.2 614 79.8
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 1.0e-290 1003.0 643 77.4
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 5.0e-290 1000.7 585 82.7
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 6.6e-290 1000.3 658 76.3
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 1.1e-289 999.6 634 77.6
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 1.1e-289 999.6 608 80.3
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 1.5e-289 999.2 583 82.2
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 3.3e-289 998.0 665 75.3
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 5.6e-289 997.3 647 75.6
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 5.6e-289 997.3 618 79.3
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 7.3e-289 996.9 651 76.3
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 9.5e-289 996.5 641 76.6
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 2.8e-288 995.0 616 78.1
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 3.6e-288 994.6 577 82.3
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 3.6e-288 994.6 651 76.7
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 6.2e-288 993.8 637 77.6
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 5.2e-287 990.7 573 83.4
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 6.8e-287 990.3 647 76.4
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 6.8e-287 990.3 638 77.1
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 2.0e-286 988.8 575 81.9
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 3.4e-286 988.0 558 84.8
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 3.4e-286 988.0 586 81.9
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 5.8e-286 987.3 578 82.4
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 9.9e-286 986.5 578 82.4
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 1.1e-284 983.0 617 78.0
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 1.1e-284 983.0 528 89.0
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 1.9e-284 982.2 543 85.8
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 3.2e-284 981.5 635 77.6
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 3.2e-284 981.5 633 77.3
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 2.1e-283 978.8 567 82.9
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 3.5e-283 978.0 638 77.3
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 4.6e-283 977.6 580 81.4
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 3.0e-282 974.9 581 80.7
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 1.5e-281 972.6 586 79.2
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 3.3e-281 971.5 586 78.8
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 3.3e-281 971.5 751 68.8
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 2.1e-280 968.8 553 84.4
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 5.2e-279 964.1 551 83.5
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 2.9e-277 958.4 562 81.5
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 2.7e-275 951.8 627 77.7
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 7.8e-275 950.3 555 80.9
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 3.0e-274 948.3 650 73.5
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 3.9e-274 948.0 650 73.8
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 8.7e-274 946.8 641 73.8
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 9.6e-273 943.3 619 75.9
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 3.6e-272 941.4 619 75.9
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 6.2e-272 940.6 618 76.2
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 8.1e-272 940.3 618 76.2
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 9.3e-268 926.8 543 79.7
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 1.1e-265 919.8 638 71.8
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 5.6e-265 917.5 532 81.0
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 1.5e-262 909.4 587 76.5
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 6.4e-261 904.0 618 73.6
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.4e-255 886.3 641 72.1
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 4.0e-255 884.8 550 76.2
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 1.7e-253 879.4 580 75.0
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 9.6e-249 863.6 564 77.0
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 7.4e-241 837.4 548 75.4
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 2.2e-240 835.9 448 89.3
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 1.4e-239 833.2 448 89.1
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 3.4e-238 828.6 547 70.7
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 5.9e-238 827.8 560 73.8
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.2e-236 821.6 439 89.3
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 2.5e-233 812.4 547 70.7
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 1.3e-232 810.1 583 66.4
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 3.6e-211 738.8 517 69.6
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.7e-203 711.8 510 70.8
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 8.6e-197 691.0 452 74.3
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 1.4e-183 647.1 538 59.1
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 7.3e-180 634.8 361 83.1
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 6.0e-174 615.1 344 86.6
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.6e-166 590.5 578 56.7
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 2.5e-156 556.6 366 76.5
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 5.1e-149 532.3 564 49.3
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 3.3e-148 529.6 546 55.7
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 2.1e-147 526.9 278 90.3
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 8.1e-147 525.0 417 65.0
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 9.3e-143 511.5 280 85.7
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 7.4e-140 501.9 346 74.6
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 5.5e-119 432.6 574 44.1
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 1.2e-113 414.8 288 70.1
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.4e-98 364.8 643 36.4
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 8.0e-94 349.0 184 88.6
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 3.0e-93 347.1 263 69.6
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 2.7e-86 323.9 179 86.6
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.6e-86 323.6 179 86.6
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 2.0e-84 317.8 188 79.3
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 1.1e-82 312.0 599 36.1
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 7.0e-82 309.3 167 88.6
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 4.7e-78 296.6 498 37.1
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 2.6e-76 290.8 585 33.7
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 3.9e-72 276.9 324 50.3
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 8.0e-70 269.2 610 33.8
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.4e-67 259.6 140 87.1
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 5.6e-63 246.5 159 74.2
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.8e-61 241.5 596 30.7
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.3e-51 208.8 117 83.8
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 1.7e-51 208.4 120 85.0
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 1.2e-46 192.2 107 85.0
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.8e-45 188.3 98 90.8
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.1e-39 169.1 121 66.9
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 1.1e-39 169.1 155 57.4
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.9e-32 144.1 108 66.7
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 1.3e-30 139.0 77 80.5
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 9.0e-29 132.9 67 88.1
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 2.0e-28 131.7 65 92.3
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 5.8e-28 130.2 94 71.3
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.4e-26 125.6 137 48.2
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 1.1e-21 109.4 64 81.2
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 3.4e-12 77.8 64 62.5
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.0e-11 76.3 54 70.4
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 1.3e-11 75.9 78 56.4
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 1.0e-08 66.2 38 73.7
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 8.7e-08 63.2 61 57.4


User provided reference genes

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