Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 0.0e+00 1633.2 1105 100.0
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 0.0e+00 1182.2 1108 80.5
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 0.0e+00 1159.4 1114 78.7
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 0.0e+00 1143.6 1108 78.2
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 0.0e+00 1132.9 1112 77.8
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 0.0e+00 1132.1 1112 77.8
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 0.0e+00 1123.2 1112 77.5
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 0.0e+00 1118.2 1107 77.3
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 0.0e+00 1110.5 1108 78.7
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 0.0e+00 1089.7 1108 75.5
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 0.0e+00 1088.2 1110 77.7
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 0.0e+00 1082.8 1133 75.4
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 0.0e+00 1082.0 1110 76.8
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 2.0e-307 1059.3 1112 74.5
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 1.1e-305 1053.5 1107 73.6
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 2.7e-304 1048.9 1111 75.3
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 1.8e-303 1046.2 1110 73.9
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 1.8e-303 1046.2 1110 73.9
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 1.8e-300 1036.2 1105 74.2
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 1.2e-299 1033.5 1109 73.8
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 1.1e-297 1026.9 1111 73.5
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 5.6e-297 1024.6 1109 72.0
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 9.5e-297 1023.8 1109 73.6
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 1.2e-296 1023.5 1109 72.3
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 5.2e-295 1018.1 1107 73.4
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 1.4e-292 1010.0 1113 71.7
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 1.2e-291 1006.9 1107 72.1
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 2.0e-291 1006.1 1105 71.3
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 7.8e-291 1004.2 1108 73.1
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 1.7e-290 1003.0 1105 72.5
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 5.0e-290 1001.5 1121 70.4
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 5.6e-289 998.0 1103 71.4
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 2.1e-288 996.1 1103 72.2
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.8e-288 995.7 1104 74.5
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 3.6e-288 995.3 1118 72.2
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 3.6e-288 995.3 1109 71.0
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 8.0e-288 994.2 1110 71.1
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 2.2e-285 986.1 1111 72.2
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 2.9e-285 985.7 1121 70.1
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 8.3e-285 984.2 1121 70.7
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 1.6e-283 979.9 1103 71.1
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 2.0e-283 979.5 1108 72.6
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 6.0e-283 978.0 1107 72.1
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 1.0e-282 977.2 1119 70.3
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.0e-282 977.2 1107 72.0
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 1.1e-281 973.8 1106 70.3
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 4.7e-280 968.4 1116 69.2
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 6.2e-280 968.0 1102 60.1
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 5.2e-279 964.9 1105 68.9
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 2.4e-276 956.1 1103 67.8
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 2.1e-275 953.0 1117 67.7
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 3.0e-274 949.1 1096 71.7
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 3.0e-274 949.1 1108 71.5
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 3.3e-273 945.7 1106 69.6
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 5.6e-273 944.9 1105 69.9
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 2.8e-272 942.6 1105 68.0
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 2.8e-272 942.6 1105 68.0
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 2.3e-271 939.5 1103 71.2
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 9.9e-270 934.1 1106 67.6
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 9.9e-270 934.1 1102 67.0
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 4.1e-268 928.7 1107 70.6
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 1.2e-267 927.2 1106 69.6
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 2.7e-267 926.0 1107 68.9
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 4.6e-267 925.2 1100 68.1
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 7.8e-267 924.5 1105 69.2
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 2.8e-264 916.0 1098 69.6
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 1.4e-263 913.7 1106 67.7
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 3.4e-262 909.1 1107 67.9
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 5.8e-262 908.3 1107 68.5
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 9.9e-262 907.5 1106 68.9
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 1.7e-261 906.7 1106 67.5
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 8.4e-261 904.4 1113 63.4
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 1.1e-260 904.0 1105 66.6
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 1.4e-260 903.7 1103 66.5
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 3.2e-260 902.5 1102 67.5
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 4.6e-259 898.7 1117 62.5
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 1.7e-258 896.7 1102 68.9
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 1.4e-255 887.1 1103 65.8
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 3.4e-254 882.5 1258 48.8
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 5.8e-254 881.7 1105 66.3
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 9.9e-254 880.9 1066 67.5
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 4.2e-252 875.5 1121 66.2
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 1.2e-251 874.0 877 80.0
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 1.9e-244 850.1 1190 46.1
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 1.2e-243 847.4 1113 65.0
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 2.7e-243 846.3 1107 67.3
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 4.6e-243 845.5 1103 65.5
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 1.8e-242 843.6 485 83.5
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 8.7e-242 841.3 1103 65.3
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 2.1e-240 836.6 1105 66.2
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 7.4e-233 811.6 487 79.1
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 8.2e-232 808.1 977 73.5
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.4e-231 807.4 488 80.1
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 1.9e-225 786.9 486 76.5
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 9.7e-225 784.6 833 67.5
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 1.9e-220 770.4 1044 60.0
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 1.8e-210 737.3 487 73.1
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 1.7e-208 730.7 1104 54.5
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 9.4e-204 714.9 1100 57.3
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 1.7e-197 694.1 945 67.3
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 1.7e-197 694.1 1099 59.1
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 3.0e-178 630.2 483 64.6
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 1.8e-162 577.8 1033 53.6
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 4.1e-159 566.6 903 65.7
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 6.6e-141 506.1 832 68.1
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.1e-138 498.8 443 59.8
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 3.8e-136 490.3 1095 43.1
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 3.9e-133 480.3 480 52.5
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 6.5e-120 436.4 253 80.6
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 8.7e-109 399.4 750 60.7
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 4.5e-97 360.5 537 38.7
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 1.9e-95 355.1 202 84.2
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 4.7e-94 350.5 205 80.5
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 9.1e-90 336.3 392 54.6
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 3.2e-87 327.8 900 34.3
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 1.7e-80 305.4 396 51.5
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 7.5e-76 290.0 452 38.5
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 2.0e-68 265.4 266 56.0
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 2.7e-65 255.0 388 45.4
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 2.3e-64 251.9 166 73.5
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 5.6e-63 247.3 357 46.8
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 9.5e-63 246.5 498 35.7
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 2.3e-53 215.3 202 62.4
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 1.2e-46 193.0 133 66.9
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 4.7e-46 191.0 99 87.9
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 3.3e-39 168.3 130 65.4
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 5.6e-39 167.5 130 65.4
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 9.5e-39 166.8 93 88.2
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 1.4e-37 162.9 183 48.6
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.0e-36 159.1 113 76.1
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 1.3e-35 156.4 123 69.1
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 2.2e-35 155.6 93 79.6
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 1.2e-30 139.8 93 73.1
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.4e-29 135.6 74 78.4
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 9.0e-29 133.7 179 49.2
RcHm_v2.0_Chr1g0315291 Rosa chinensis HOM05D004966 ORTHO05D006199 2.9e-27 128.6 76 82.9
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 7.3e-23 114.0 106 59.4
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 2.4e-21 109.0 129 47.3
ATR0030G036 Amborella trichopoda HOM05D004966 ORTHO05D006199 3.3e-15 88.6 120 40.8
CBR_g36362 Chara braunii HOM05D004966 ORTHO05D006199 3.2e-10 72.0 182 31.3
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.3e-08 66.6 43 79.1
CSS0042095 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 6.7e-08 64.3 36 86.1
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 1.1e-07 63.5 49 53.1
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 1.6e-06 59.7 170 33.5
HanXRQChr06g0176501 Helianthus annuus HOM05D004966 ORTHO05D006199 2.1e-06 59.3 44 65.9


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