Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 2.8e-285 984.6 484 100.0
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.9e-233 812.4 487 80.5
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 4.2e-217 758.1 489 76.7
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 3.0e-215 751.9 489 75.5
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 3.1e-212 741.9 501 72.9
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 4.1e-212 741.5 489 74.2
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.2e-211 740.0 492 74.4
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 1.0e-210 736.9 489 74.6
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 1.7e-210 736.1 489 74.4
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 9.5e-209 730.3 498 73.3
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.2e-208 729.9 492 72.8
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.1e-208 729.2 492 72.2
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 6.1e-208 727.6 494 74.7
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 8.0e-208 727.2 500 71.2
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 1.8e-207 726.1 492 72.0
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 3.0e-207 725.3 489 73.0
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.7e-202 709.5 489 72.2
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.7e-202 709.5 489 71.6
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 8.6e-202 707.2 489 71.0
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 3.6e-200 701.8 491 71.1
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 3.6e-200 701.8 489 71.0
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.1e-199 700.3 491 70.9
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.5e-195 685.3 491 70.1
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.3e-194 683.3 491 69.9
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 3.3e-193 678.7 491 69.9
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 8.9e-191 670.6 490 68.4
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 2.6e-190 669.1 489 68.9
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 5.8e-190 667.9 495 68.3
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 1.3e-189 666.8 489 68.1
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.1e-188 663.7 489 67.9
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 3.2e-188 662.1 490 68.4
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 1.0e-186 657.1 490 67.6
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 9.5e-185 650.6 741 49.7
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 9.5e-185 650.6 399 78.2
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.1e-184 649.4 399 78.7
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 3.1e-183 645.6 491 66.8
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 3.1e-183 645.6 491 66.8
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 8.9e-183 644.0 489 65.8
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 1.5e-182 643.3 484 66.9
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 2.6e-182 642.5 441 70.3
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 2.6e-182 642.5 490 65.7
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 7.6e-182 641.0 485 66.6
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 1.3e-181 640.2 484 66.9
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 2.2e-181 639.4 557 60.5
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 4.1e-180 635.2 493 65.9
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 9.2e-180 634.0 404 75.7
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 2.7e-179 632.5 460 67.8
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 6.0e-179 631.3 489 66.1
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.1e-177 627.1 489 64.0
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 7.3e-177 624.4 459 67.5
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 4.7e-176 621.7 489 63.4
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 1.8e-175 619.8 459 66.9
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 2.4e-175 619.4 459 66.4
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.6e-174 615.9 472 65.0
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.7e-173 613.2 438 69.9
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 2.9e-173 612.5 489 63.2
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 4.9e-173 611.7 490 64.9
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.0e-170 604.0 473 64.3
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 4.3e-169 598.6 500 61.2
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.8e-167 593.2 443 66.8
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 6.9e-167 591.3 560 56.6
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.6e-166 589.3 497 60.2
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 3.4e-166 589.0 486 61.9
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 6.4e-165 584.7 488 59.8
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.1e-164 583.9 488 60.5
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 3.2e-164 582.4 497 62.4
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 7.1e-164 581.3 489 60.5
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 7.1e-164 581.3 464 65.3
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 1.6e-163 580.1 489 60.7
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.5e-163 578.9 488 60.5
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 1.6e-160 570.1 524 58.0
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 2.8e-160 569.3 460 64.6
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 6.2e-160 568.2 488 60.0
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 6.2e-160 568.2 490 60.2
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 6.9e-159 564.7 416 69.0
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.4e-158 562.4 492 59.3
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 3.4e-158 562.4 488 59.4
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 9.9e-158 560.8 534 56.7
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 1.7e-157 560.1 482 59.3
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 1.7e-157 560.1 487 59.5
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 3.8e-157 558.9 482 59.1
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 5.5e-156 555.1 490 59.4
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 5.5e-156 555.1 466 61.8
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.2e-155 553.9 402 67.9
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.6e-155 553.5 397 69.0
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 6.0e-155 551.6 428 63.6
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 7.9e-155 551.2 406 66.7
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.8e-154 550.1 488 59.4
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 1.8e-154 550.1 428 63.6
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 1.8e-154 550.1 428 63.6
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.3e-154 549.7 412 63.6
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 3.0e-154 549.3 406 66.3
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.9e-154 548.9 429 62.5
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.9e-154 548.9 432 64.4
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 5.1e-154 548.5 446 60.8
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 6.7e-154 548.1 433 64.7
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 6.7e-154 548.1 398 66.8
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 8.7e-154 547.7 490 57.8
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 3.3e-153 545.8 476 61.1
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 4.3e-153 545.4 556 55.9
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 5.6e-153 545.0 402 65.9
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 4.8e-152 542.0 514 57.6
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 4.8e-152 542.0 428 65.9
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.2e-152 541.6 433 64.9
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.8e-151 540.0 428 62.9
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.8e-151 540.0 421 64.8
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 3.1e-151 539.3 402 64.7
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 4.0e-151 538.9 404 66.8
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 6.9e-151 538.1 485 58.1
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.5e-150 537.0 501 58.1
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.5e-150 537.0 429 62.5
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 2.0e-150 536.6 402 64.2
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.0e-150 536.6 409 66.0
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 5.8e-150 535.0 494 56.9
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 2.5e-148 529.6 485 57.1
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 3.2e-148 529.3 317 81.1
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 3.2e-148 529.3 477 58.5
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 4.2e-148 528.9 397 68.0
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 1.6e-147 526.9 487 56.7
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 1.6e-147 526.9 487 56.7
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 1.6e-147 526.9 487 56.7
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.3e-146 523.9 492 56.7
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.3e-146 523.9 466 58.6
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.8e-146 523.5 486 57.6
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 2.3e-146 523.1 402 64.4
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 5.1e-146 521.9 486 57.4
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 1.1e-145 520.8 400 66.2
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 1.9e-145 520.0 495 56.4
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 3.7e-144 515.8 510 54.3
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 6.3e-144 515.0 516 55.6
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 6.9e-143 511.5 402 62.2
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.2e-142 510.8 401 62.8
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.2e-142 510.8 368 68.5
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 1.5e-142 510.4 406 64.0
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 3.4e-142 509.2 370 68.1
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 1.4e-140 503.8 495 54.9
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 5.3e-135 485.3 634 46.1
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 5.9e-134 481.9 371 65.5
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 1.0e-133 481.1 377 64.7
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 2.2e-133 479.9 405 60.2
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 2.9e-133 479.6 418 60.3
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.0e-126 456.8 310 71.3
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.3e-125 454.1 400 55.5
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 5.9e-118 428.7 402 52.2
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 3.6e-115 419.5 448 49.1
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 1.4e-106 391.0 375 54.1
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 5.4e-95 352.4 350 56.0
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 2.0e-94 350.5 279 64.2
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 7.0e-87 325.5 251 65.3
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.6e-86 322.8 220 72.3
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.4e-81 306.2 235 66.4
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 1.4e-79 301.2 202 70.3
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 1.4e-74 284.6 218 62.8
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.9e-68 264.2 310 46.8
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 8.9e-66 255.4 238 55.9
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.2e-63 246.9 416 41.8
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 7.3e-52 209.1 296 42.2
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 3.1e-50 203.8 479 33.4
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 8.1e-43 179.1 234 51.7
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 3.5e-38 163.7 264 40.9
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.8e-37 161.4 159 55.3
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.2e-33 148.7 187 45.5
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 2.7e-30 137.5 116 57.8
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.1e-28 132.1 116 59.5
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 3.3e-28 130.6 286 31.1
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 4.8e-27 126.7 104 62.5
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 1.8e-26 124.8 606 23.9
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.0e-25 121.3 130 50.8
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 2.6e-25 120.9 116 56.9
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 6.9e-18 96.3 99 53.5
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.1e-12 79.0 66 60.6
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 4.1e-10 70.5 312 25.3
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.6e-09 67.8 45 68.9
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 3.8e-08 63.9 49 63.3


User provided reference genes

Program Settings