Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 2.2e-249 865.1 435 100.0
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 5.2e-190 667.9 430 78.1
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 1.7e-188 662.9 434 77.6
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 1.1e-187 660.2 430 76.7
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 4.1e-187 658.3 430 76.7
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 3.8e-185 651.7 433 76.4
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 5.0e-185 651.4 432 76.2
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.2e-183 646.7 432 75.7
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 6.1e-183 644.4 430 75.1
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 5.2e-182 641.3 438 74.2
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 5.2e-182 641.3 433 75.5
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 8.9e-182 640.6 433 76.0
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 8.9e-182 640.6 433 76.0
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 8.9e-182 640.6 433 76.2
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 3.4e-181 638.6 431 74.5
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 4.4e-181 638.3 433 75.1
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 4.4e-181 638.3 433 75.8
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 1.3e-180 636.7 432 74.1
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 3.7e-180 635.2 407 78.1
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 6.4e-180 634.4 431 73.8
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.9e-179 632.9 433 74.4
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.4e-179 632.5 433 74.8
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 1.2e-178 630.2 430 72.6
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.6e-178 629.8 393 80.4
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 2.7e-178 629.0 431 72.9
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 7.8e-178 627.5 433 74.1
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 1.0e-177 627.1 432 73.4
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 1.0e-177 627.1 433 74.1
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 3.0e-177 625.5 430 72.8
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 3.0e-177 625.5 430 73.0
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 5.0e-177 624.8 434 71.7
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 8.6e-177 624.0 431 71.9
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.9e-176 622.9 431 71.7
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 5.6e-176 621.3 462 68.6
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 9.5e-176 620.5 431 72.2
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 4.7e-175 618.2 430 71.6
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 8.0e-175 617.5 443 70.7
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 1.8e-174 616.3 432 72.5
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 3.1e-174 615.5 430 71.6
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 8.9e-174 614.0 432 69.9
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 1.2e-173 613.6 434 70.5
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 2.0e-173 612.8 430 71.4
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 3.4e-173 612.1 430 71.4
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 4.4e-173 611.7 434 71.0
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 4.9e-172 608.2 431 68.7
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 1.4e-171 606.7 460 68.9
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 2.4e-171 605.9 442 70.6
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.2e-170 603.6 432 71.5
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 2.3e-169 599.4 434 70.0
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 6.6e-169 597.8 427 69.3
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 2.1e-167 592.8 434 68.2
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 4.7e-167 591.7 433 69.7
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 1.4e-166 590.1 434 66.6
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 6.8e-166 587.8 430 68.6
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.6e-165 585.9 430 70.0
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.6e-165 585.9 430 70.0
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 2.6e-165 585.9 400 73.8
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 1.7e-164 583.2 433 68.1
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.7e-164 583.2 432 67.1
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 2.1e-162 576.2 433 68.8
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 2.7e-162 575.9 388 74.2
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 6.6e-161 571.2 442 67.2
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 8.6e-161 570.9 450 64.7
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 2.5e-160 569.3 399 70.4
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 1.6e-159 566.6 449 64.1
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 2.8e-159 565.8 388 74.0
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 8.1e-159 564.3 432 67.1
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 1.2e-157 560.5 428 64.3
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 1.5e-157 560.1 458 60.7
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 3.4e-157 558.9 432 63.7
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 6.4e-156 554.7 430 67.4
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 2.4e-155 552.7 437 69.1
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 3.2e-155 552.4 433 64.0
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 1.2e-154 550.4 444 63.3
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 2.1e-154 549.7 434 64.1
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 6.0e-154 548.1 447 62.4
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 1.0e-153 547.4 429 63.2
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 3.9e-153 545.4 428 62.6
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 5.1e-153 545.0 453 61.6
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 5.1e-153 545.0 449 61.7
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 5.1e-153 545.0 430 64.0
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 6.6e-153 544.7 454 61.5
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 6.6e-153 544.7 435 64.6
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 4.3e-152 542.0 377 73.5
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 2.8e-151 539.3 433 65.1
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 3.6e-151 538.9 433 64.4
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 3.1e-150 535.8 386 70.5
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 3.1e-150 535.8 386 70.5
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.5e-149 533.5 436 61.5
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 7.6e-149 531.2 415 67.2
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.3e-148 530.4 381 67.5
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 4.9e-148 528.5 453 59.8
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 2.4e-147 526.2 453 59.4
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 7.8e-146 521.2 438 63.0
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 5.1e-145 518.5 379 69.7
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 4.3e-144 515.4 381 71.9
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 2.1e-143 513.1 432 63.4
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 2.8e-143 512.7 380 66.6
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 1.1e-142 510.8 432 62.7
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 9.9e-141 504.2 348 72.7
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 6.4e-140 501.5 434 60.1
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.2e-138 497.3 406 66.7
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 2.1e-138 496.5 420 59.3
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.9e-137 492.3 433 63.0
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 1.1e-136 490.7 436 61.2
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 7.4e-136 488.0 470 59.1
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 1.3e-135 487.3 431 58.0
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 8.1e-135 484.6 311 77.2
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 3.1e-134 482.6 428 57.7
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.8e-129 466.8 431 56.6
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 3.9e-129 465.7 431 57.1
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 2.5e-128 463.0 431 55.9
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 2.6e-125 453.0 298 75.2
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.0e-124 451.1 331 69.2
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.3e-124 450.7 385 61.0
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 3.5e-122 442.6 440 55.9
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 6.7e-121 438.3 435 54.5
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 4.1e-118 429.1 431 55.5
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.0e-112 410.2 351 60.1
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 6.5e-100 368.6 321 60.7
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.8e-97 360.5 279 65.2
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.9e-97 359.4 279 64.9
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 2.0e-96 357.1 279 65.2
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 9.7e-96 354.8 439 49.9
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 6.3e-95 352.1 285 63.2
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 4.1e-94 349.4 351 53.8
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 9.1e-94 348.2 230 74.3
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 9.1e-94 348.2 272 65.8
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 1.1e-91 341.3 292 58.6
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.2e-88 331.3 279 61.3
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.9e-83 313.9 326 48.5
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 7.2e-75 285.4 366 45.1
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 8.3e-71 271.9 196 66.3
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 1.1e-70 271.6 278 50.4
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 4.1e-70 269.6 154 89.0
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 4.6e-69 266.2 169 73.4
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.0e-68 262.7 175 77.1
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.5e-67 261.2 154 85.1
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 2.5e-67 260.4 153 85.6
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 8.0e-66 255.4 153 84.3
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.5e-64 248.8 145 86.9
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.7e-63 247.7 230 56.5
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 6.4e-63 245.7 157 78.3
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 8.6e-60 235.3 495 36.2
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 2.3e-57 227.3 182 66.5
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 2.9e-55 220.3 139 79.9
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 9.2e-54 215.3 131 84.0
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 2.3e-52 210.7 182 62.6
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.6e-50 204.5 298 42.3
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 3.6e-50 203.4 122 82.8
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 1.8e-49 201.1 154 63.0
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 1.5e-48 198.0 465 32.7
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 2.9e-47 193.7 130 80.8
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.2e-42 178.3 183 56.8
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 2.0e-40 171.0 97 90.7
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 2.0e-40 171.0 106 81.1
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 1.9e-35 154.5 116 67.2
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 5.3e-33 146.4 129 57.4
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 7.9e-29 132.5 146 52.7
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 2.2e-23 114.4 68 86.8
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 8.4e-23 112.5 62 95.2
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.2e-22 110.2 99 57.6
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 9.3e-22 109.0 213 35.7
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 7.6e-16 89.4 54 87.0
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 2.3e-12 77.8 57 66.7
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 2.3e-12 77.8 196 31.1
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 4.3e-11 73.6 70 50.0
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 2.6e-08 64.3 50 62.0
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.0e-07 60.1 57 56.1


User provided reference genes

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