Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 1.2e-310 1068.9 528 100.0
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 8.3e-267 923.3 529 85.4
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 1.5e-255 885.9 524 82.4
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 1.9e-255 885.6 528 81.1
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 9.5e-255 883.2 528 80.7
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 1.9e-250 869.0 557 77.2
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 2.4e-250 868.6 526 80.8
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 2.1e-249 865.5 532 80.1
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 2.1e-249 865.5 529 78.6
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 5.1e-248 860.9 533 79.0
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 1.4e-245 852.8 528 77.7
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 3.1e-245 851.7 536 77.6
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 1.4e-242 842.8 528 77.8
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 2.4e-242 842.0 559 75.3
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 3.2e-242 841.6 530 76.2
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 5.4e-242 840.9 536 76.3
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 6.0e-241 837.4 530 75.8
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 2.8e-238 828.6 530 75.7
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 1.1e-237 826.6 536 76.7
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 7.6e-236 820.5 524 75.4
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 4.9e-235 817.8 531 75.0
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 8.4e-235 817.0 545 75.2
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 1.9e-234 815.8 540 73.5
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 2.4e-234 815.5 530 74.3
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 4.2e-234 814.7 531 74.4
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 1.6e-233 812.8 532 74.4
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 2.7e-233 812.0 534 74.2
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 1.0e-232 810.1 525 74.5
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 1.3e-232 809.7 523 74.8
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 1.9e-231 805.8 528 74.4
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 2.5e-231 805.4 528 73.5
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 1.3e-230 803.1 524 74.0
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 3.7e-230 801.6 569 69.4
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 3.1e-229 798.5 541 74.5
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 1.3e-227 793.1 528 72.9
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 5.5e-226 787.7 525 73.7
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 2.1e-225 785.8 535 72.3
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 3.0e-224 781.9 527 71.0
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 8.7e-224 780.4 541 72.3
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 1.5e-223 779.6 534 71.0
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 3.7e-222 775.0 525 73.7
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 6.2e-222 774.2 482 78.4
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 3.1e-221 771.9 484 78.1
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 6.9e-221 770.8 524 72.9
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 1.5e-220 769.6 528 73.1
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 1.5e-220 769.6 563 69.3
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 3.4e-220 768.5 524 71.6
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 3.4e-220 768.5 524 72.7
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 7.6e-220 767.3 528 73.1
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 2.2e-219 765.8 524 71.2
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 3.8e-219 765.0 532 72.0
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 6.5e-219 764.2 528 73.1
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 1.6e-217 759.6 526 71.7
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 7.9e-217 757.3 522 71.8
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 4.3e-215 751.5 528 69.7
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 2.2e-214 749.2 554 68.4
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 1.4e-213 746.5 534 70.2
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 2.4e-213 745.7 543 67.0
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 5.3e-213 744.6 526 69.4
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 4.5e-212 741.5 530 68.3
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 1.3e-211 740.0 524 71.0
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 2.2e-211 739.2 524 71.0
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 2.9e-211 738.8 524 70.8
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 3.8e-211 738.4 524 70.8
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 1.4e-210 736.5 502 70.3
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 5.1e-208 728.0 546 66.7
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 1.5e-207 726.5 525 70.3
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 9.7e-207 723.8 549 67.4
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 1.4e-205 719.9 524 69.5
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 2.4e-205 719.2 533 68.1
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 2.4e-205 719.2 531 64.4
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 3.4e-204 715.3 523 67.3
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 2.5e-202 709.1 529 64.8
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 1.6e-201 706.4 528 65.3
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 2.3e-200 702.6 510 70.4
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 4.7e-193 678.3 482 69.7
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 1.4e-189 666.8 615 58.0
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 4.5e-188 661.8 526 64.8
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 2.4e-181 639.4 538 62.3
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 6.1e-177 624.8 529 60.5
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 8.8e-176 620.9 529 58.0
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 2.9e-171 605.9 531 54.6
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 8.9e-168 594.3 591 53.5
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 5.7e-167 591.7 529 54.6
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 5.0e-163 578.6 536 55.8
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 5.0e-163 578.6 631 51.7
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 3.6e-161 572.4 525 52.4
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 2.3e-160 569.7 526 54.9
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 7.5e-159 564.7 556 56.5
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 3.7e-158 562.4 529 54.8
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 7.0e-149 531.6 535 50.5
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 1.6e-148 530.4 301 81.1
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 5.6e-138 495.4 521 46.6
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 2.1e-137 493.4 316 74.1
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 3.3e-130 469.5 300 74.0
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 1.8e-128 463.8 442 56.3
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 5.3e-128 462.2 558 49.8
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 2.9e-126 456.4 301 73.1
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 3.2e-109 399.8 562 42.9
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 7.1e-109 398.7 244 78.7
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 2.2e-102 377.1 303 64.0
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 1.2e-92 344.7 638 32.0
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 1.8e-88 330.9 371 50.9
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 4.2e-77 293.1 572 34.3
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 4.8e-73 279.6 212 67.5
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 2.7e-68 263.8 571 32.7
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 7.7e-63 245.7 209 59.3
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 3.2e-61 240.4 209 58.4
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 6.8e-59 232.6 207 58.9
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.6e-58 230.7 207 58.9
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 4.4e-58 229.9 207 58.0
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 7.0e-56 222.6 170 64.1
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 6.3e-49 199.5 124 76.6
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.2e-44 185.3 104 79.8
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 1.2e-42 178.7 156 62.8
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 5.8e-34 149.8 183 47.5
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 9.2e-32 142.5 85 75.3
Cfa025039 Carpinus fangiana HOM05D006175 ORTHO05D008081 8.6e-30 136.0 558 25.3
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 2.4e-24 117.9 324 29.3
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 5.2e-19 100.1 108 55.6
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 1.5e-13 82.0 47 78.7
Gorai.009G404500 Gossypium raimondii HOM05D006175 ORTHO05D047312 3.3e-13 80.9 53 75.5
Gohir.D04G101160 Gossypium hirsutum HOM05D006175 ORTHO05D047312 5.6e-13 80.1 52 76.9
TPR.G28017 Trifolium pratense HOM05D006175 ORTHO05D008081 3.1e-11 74.3 113 42.5
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 5.3e-11 73.6 58 63.8
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 1.7e-09 68.6 33 87.9
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 1.7e-09 68.6 33 87.9
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 1.7e-09 68.6 33 87.9
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 1.7e-09 68.6 33 87.9
Nn2g11046 Nelumbo nucifera HOM05D006175 ORTHO05D008081 2.2e-09 68.2 51 68.6
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 4.9e-09 67.0 33 84.8


User provided reference genes

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