Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 2.0e-228 795.4 410 100.0
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 1.5e-186 656.4 381 90.0
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 7.8e-180 634.0 367 89.6
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 2.3e-179 632.5 381 86.1
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 5.1e-179 631.3 367 88.8
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 6.2e-177 624.4 384 86.2
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 3.1e-176 622.1 367 88.3
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 3.1e-176 622.1 367 88.3
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 1.2e-175 620.2 381 85.3
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 2.6e-175 619.0 381 83.7
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 1.3e-174 616.7 367 83.9
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 2.2e-174 615.9 381 84.5
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 2.2e-174 615.9 368 84.2
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 3.8e-174 615.1 381 83.7
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 3.8e-174 615.1 381 84.0
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 6.4e-174 614.4 368 86.7
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 1.9e-173 612.8 373 85.8
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 2.1e-172 609.4 381 83.7
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 2.7e-172 609.0 368 85.3
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 4.6e-172 608.2 370 85.7
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 1.7e-171 606.3 381 82.9
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 4.3e-170 601.7 380 84.5
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 9.6e-170 600.5 367 84.7
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 1.6e-169 599.7 370 84.3
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 1.6e-169 599.7 381 80.1
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 6.2e-169 597.8 381 78.7
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 6.2e-169 597.8 381 78.7
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 8.1e-169 597.4 381 82.2
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 8.1e-169 597.4 416 76.4
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 8.1e-169 597.4 379 79.4
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 2.4e-168 595.9 378 80.7
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 2.4e-168 595.9 381 78.5
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 3.1e-168 595.5 375 81.3
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 4.0e-168 595.1 375 81.3
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 1.2e-167 593.6 368 84.2
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 1.2e-167 593.6 416 78.4
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 2.0e-167 592.8 381 78.7
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 4.5e-167 591.7 368 84.5
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 7.6e-167 590.9 381 79.0
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 1.3e-166 590.1 381 81.6
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 2.2e-166 589.3 368 80.4
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 2.9e-166 589.0 381 79.5
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 3.8e-166 588.6 384 78.1
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 3.8e-166 588.6 381 79.0
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 6.4e-166 587.8 381 79.0
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 8.4e-166 587.4 360 85.0
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 8.4e-166 587.4 381 80.1
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 1.4e-165 586.6 381 78.7
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 1.9e-165 586.3 369 81.3
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 1.9e-165 586.3 381 79.3
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 2.4e-165 585.9 381 79.3
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 5.4e-165 584.7 381 77.7
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 7.1e-165 584.3 381 79.3
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 7.1e-165 584.3 361 80.9
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 1.2e-164 583.6 380 80.3
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 2.1e-164 582.8 381 79.0
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 7.9e-164 580.9 381 79.3
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 1.3e-163 580.1 381 76.1
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 1.3e-163 580.1 381 76.1
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 1.8e-163 579.7 369 83.7
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 2.3e-163 579.3 383 80.2
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 3.0e-163 578.9 381 78.5
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 3.0e-163 578.9 381 79.3
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 5.1e-163 578.2 371 78.4
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 6.7e-163 577.8 382 78.5
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 3.3e-162 575.5 381 78.7
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 3.3e-162 575.5 383 81.2
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 4.3e-162 575.1 374 78.3
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 7.4e-162 574.3 369 82.4
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 9.6e-162 573.9 381 78.0
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 9.6e-162 573.9 370 81.9
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 2.8e-161 572.4 385 78.2
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 8.1e-161 570.9 382 77.7
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 8.1e-161 570.9 369 82.4
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 1.1e-160 570.5 338 87.3
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 2.4e-160 569.3 369 83.2
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 2.0e-159 566.2 362 82.0
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 7.6e-159 564.3 367 78.7
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 7.6e-159 564.3 354 82.5
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 1.3e-158 563.5 384 78.6
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 2.2e-158 562.8 391 77.7
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 2.2e-158 562.8 381 76.6
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 2.9e-158 562.4 382 78.8
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 3.8e-158 562.0 367 81.2
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 6.5e-158 561.2 383 78.3
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 1.9e-157 559.7 381 77.7
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 1.9e-157 559.7 381 77.7
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 1.9e-157 559.7 381 76.9
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 3.2e-157 558.9 382 77.5
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 3.2e-157 558.9 382 77.5
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 7.1e-157 557.8 384 77.9
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 7.1e-157 557.8 382 78.0
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 7.1e-157 557.8 367 78.2
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 2.1e-156 556.2 379 77.6
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 3.5e-156 555.4 383 76.8
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 3.9e-155 552.0 381 76.6
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 3.9e-155 552.0 371 76.8
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 1.1e-154 550.4 398 74.6
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 1.6e-148 530.0 388 73.5
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 2.8e-145 519.2 388 71.1
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 3.1e-144 515.8 368 71.7
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 2.0e-143 513.1 368 72.0
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 8.5e-142 507.7 373 72.7
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 2.7e-140 502.7 388 71.1
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 3.9e-139 498.8 373 72.1
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 3.3e-138 495.7 382 70.2
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 1.7e-134 483.4 370 71.1
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 3.5e-119 432.6 267 88.8
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 5.9e-119 431.8 363 62.0
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 7.7e-111 404.8 351 66.7
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 6.6e-102 375.2 230 80.9
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 3.7e-97 359.4 245 78.4
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 4.1e-96 355.9 373 53.6
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 2.5e-93 346.7 351 53.6
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 6.4e-89 332.0 367 50.4
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 1.5e-85 320.9 352 49.4
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 1.6e-84 317.4 373 47.7
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 2.6e-50 203.8 126 83.3
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 4.3e-37 159.8 106 77.4
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 2.9e-09 67.4 66 57.6
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 2.9e-09 67.4 66 57.6
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 1.9e-08 64.7 70 55.7
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 2.5e-08 64.3 37 83.8


User provided reference genes

Program Settings